Array 1 107924-106254 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQH01000039.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN024772 contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107923 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 107862 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 107801 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 107740 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 107667 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 107606 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 107545 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 107484 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 107423 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107362 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107301 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107240 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107179 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107118 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107057 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 106996 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106935 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106874 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106813 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106710 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106649 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106588 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106527 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106466 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106405 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106344 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106283 29 96.6 0 A............................ | A [106256] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125306-124180 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQH01000039.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN024772 contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125305 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125244 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125183 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125122 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125061 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125000 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124939 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 124878 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 124817 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124756 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124695 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124634 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124573 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124512 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124451 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124390 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124329 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124268 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124207 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //