Array 1 2117-1234 **** Predicted by CRISPRDetect 2.4 *** >NZ_QITB01000006.1 Cronobacter sakazakii strain CS-8 Scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2116 29 96.6 32 ......T...................... CATTTTCTTTATCACACAACTTTAATTGCCCT 2055 29 100.0 32 ............................. TGCTCTCGTTAGATTTAAACCAGCTGACCAGG 1994 29 100.0 32 ............................. AGCTCAGCGGCGCAATTATCGATTTCCGCGGC 1933 29 100.0 32 ............................. ATGGATTTTATCGACCGCCCAATTGATTATTA 1872 29 100.0 32 ............................. ATGGATTTTATCGACCGCCCAATTGATTATTA 1811 29 100.0 32 ............................. ATGGATTTTATCGACCGCCCAATTGATTATTA 1750 29 100.0 32 ............................. CGTCCAGCAGAGACAGCAGAAACGGCAGCAGT 1689 29 100.0 32 ............................. ACAAGCCGCAGCGGCGGCGGGGGGTTATTTTG 1628 29 100.0 32 ............................. GGGGCGGTGTTGTTCTTTAGCGCGAAGCGCTG 1567 29 100.0 32 ............................. AGCAAAATAGATAACGCACAGAACGAAAACCT 1506 29 100.0 32 ............................. CCGAACATGACCTGATGCGCCTGGCTATCGAT 1445 29 100.0 32 ............................. GCTGCGCTTGGCCTGCAATATATCGGTACACA 1384 29 100.0 32 ............................. TCGATCGGCAGGTGGCCGAGCGCAGCGAGAAA 1323 29 100.0 32 ............................. ATTTCAGTGTCTTCGTCCGTCAGCGCACCTTC 1262 29 93.1 0 .....................G......A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGATGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATTCCGGTGGATTTGGACGGCCTGCGGCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCGCGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTACATCAATAACGTGGCTTAATGAATATGTGCAGGATATATTATTTTATATGTCATTATCTAATCATTAACTCTGAGCTGGGAAATAAAGATAACGGTAATAATAAAAAATGAAAGGTATTACATCTGTTCTATTTTTGCTAGTTATATTGAAATTCTTTCTATTGCTAACTTTTATGTTTGTTAATTTAAATTAAATGTTAATTACAGCGTTTATTAAGTTAAACATGTAGAATTTATACTTTCTTCAATTAATAGGAATATATAAATGACATGGGATAAGTATGCAGCAATACGTCATGCACATGATCGGGCCTATAGCAATAGCCATCATAAGTGTGAGTTATTTGTCAAAGAAGCTATTATTGCTGGTGGGGTGGATATACATCCAACACCTTCTGCAAAAGATATGGGTAACGCATTGATTCACGCTGGTTTTTATGAAGTTTATGGTGAGCCCGTAGCGGGTGACGTTGCTGTTATTAACGCGATCCCCGGAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29768-29129 **** Predicted by CRISPRDetect 2.4 *** >NZ_QITB01000006.1 Cronobacter sakazakii strain CS-8 Scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29767 29 100.0 32 ............................. CTGGTCAAAGCCGCACAAAAATCCCATGTCGA 29706 29 100.0 32 ............................. GCTGCAATGCCGGTCAGGGTCAGCAGTTCCTG 29645 29 100.0 32 ............................. CCTCCTCATGCGAGCGGGCGCTGGTCATCAGC 29584 29 100.0 32 ............................. AAGGCGTTTACGGCTTGTTGGGCTTGTTTAAT 29523 29 100.0 32 ............................. GTGTTAACTCAAATTCATCGTCCCACGGTGGG 29462 29 100.0 32 ............................. ACCCGCCAGGCTGATGAACTCGCAGACCGGCA 29401 29 100.0 32 ............................. TCGGAATCCTATGGTCAGCCTGTGATGTACAA 29340 29 96.6 32 ...........................T. TTTGCCACCACAATAATCATTCCAGTTCTCAT 29279 29 96.6 32 .........A................... TCTTCCAGGAGATCGATCCCTTGTCTCAGAGC 29218 29 93.1 32 AT........................... TACGGCGCTTGCAGCTCTTGCGATCATTATGG 29157 29 86.2 0 .T...................TA.....T | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.5 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTTGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAACGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : ACGCCACCTGATTCACGGCGCTGATGTGAAATAGGGATCACGATTTCAGTCATACCTTTATTGAACCCGCTTCGGCGGGTTTTGTCACATCCCGTTCCCTGTTACTCTTTTGGCACATTTATCAAAGGGAATAGGGATATGAAGAAGGTTGTCATGGCTATTATTTTAGGCTCTTTTCTAACTGGCTGCGCGCCTGGCTACGTTTATACGCCACCTTCTAAGGTGGAATATGATAAAACCATGCAAGAAGCAAAGCGCAAGGACGCAGAGTTTGCTGAAAAAGTAAAAAATATAAATTTAGATACTGCGGATGTTGGGGTAAAGCCGAAGGATTACCAATCTTTGGTTGAATCGGCGATTCGTGAAGGTTTGAAAGATCCAGACTCTGCTAAGTTCTACGACTTCACCTCGCCACGCAAAGAAGTAATGGTTGAACAGGGTGACTTTGTTTATGGCTACTCGACATGTGTTTATGTTAACGCCAAGAATTCATATGGTGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //