Array 1 5293-6186 **** Predicted by CRISPRDetect 2.4 *** >NZ_QROU01000114.1 Phocaeicola vulgatus strain AF37-17 AF37-17.Scaf114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 5293 33 97.0 31 ................................T CCTGTGCCAGACTTTCCAAACTTCTGCCTGT 5357 33 97.0 33 ................................C GGAACGTGATAGAGTTTACCGATATAAACTATA 5423 33 100.0 35 ................................. TCCATACTACAACAGAGAGTAAACCTGCCACTCCT 5491 33 97.0 32 ................................T GACGGATTGAGCGTGTTTATAACTTATAATGA 5556 33 100.0 35 ................................. AGTTAATGATTCCTTCAAACAATGCCGAAATCGTA 5624 33 100.0 36 ................................. GAAAGATACCACATAACGGAAAGCAGAAGCATCAGT 5693 33 97.0 32 ................................T GGTGTCCTGTGGTAGGGTGTACCTTTCCCGAT 5758 33 97.0 32 ................................T AGGGCTTCTATTTCCTTGTATCGTTCCGAACC 5823 33 100.0 32 ................................. CACAGCGGACGAGGCTGTATGACCTCTATGAG 5888 33 100.0 33 ................................. CAATATTATTGTATTAGAGTAAAAGGAGATAGT 5954 33 97.0 34 ................................T TTATAATAGGTTTCATGAATGTTCGGCATTTTGG 6021 33 100.0 32 ................................. ATCATAGTTATTTACTTTTGATTTTTCCAAAC 6086 33 100.0 33 ................................. ATGACGAGGTGAATACGTGTATAGACAACCATA 6152 33 93.9 0 ....................A.........G.. | TA [6171] ========== ====== ====== ====== ================================= ==================================== ================== 14 33 98.3 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGGGTATTTCTTTGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : ATTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAATCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGCGTTCCAGAGTAAATATATTATATTTTTTACTATACTATTCCTTGTTGTTTATTTGTTATATTGTTGATTATTAATGTGTTATTGTCTGTTTGTGTCGATTGTTTTTTCTTATCTTTATAAAATATATTAAAACATAAACTAACATGGAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATGG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //