Array 1 19509-21671 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJQ01000001.1 Erwinia amylovora strain WSDA87-73 NODE_11_length_66973_cov_34.2455, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19509 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 19570 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 19631 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 19692 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 19753 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 19814 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 19875 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 19936 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 19997 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 20058 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 20119 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 20180 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 20241 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 20302 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 20363 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 20424 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 20485 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 20546 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 20607 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 20668 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 20729 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 20790 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 20851 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 20912 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 20973 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 21034 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 21095 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 21156 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 21217 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 21278 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 21339 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 21400 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 21461 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 21522 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 21583 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 21644 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32579-34684 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJQ01000001.1 Erwinia amylovora strain WSDA87-73 NODE_11_length_66973_cov_34.2455, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32579 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 32640 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 32701 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 32762 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 32823 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 32884 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 32945 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 33007 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 33068 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 33129 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 33190 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 33251 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 33312 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 33373 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 33434 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 33495 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 33556 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 33617 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 33678 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 33740 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 33801 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 33862 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 33923 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 33984 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 34045 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 34107 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 34168 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 34229 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 34290 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 34351 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 34412 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 34473 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 34534 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 34595 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 34656 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //