Array 1 329-831 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRII01000188.1 Acinetobacter baumannii strain Abau971 971_S81_R1__paired__contig_188, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================================================== ================== 329 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 389 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 449 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 509 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 569 30 96.7 30 .................T............ CTCATCGTGAAGGTTTTGCAAATATGCCTT 629 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 689 30 60.0 83 ..................NNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATACGCCATTTAGAAAGTCTTTATCAGTTACGATGGCATGAGTTTTTGT 802 30 96.7 0 ............................A. | ========== ====== ====== ====== ============================== =================================================================================== ================== 8 30 92.9 38 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : ATACGCCATTTAGAAATTCTGTATTAGTGGCCTTCATGTGCATTAAAAGTTCATGGCGGCATACGCCATTTAGAAAATACATGCCCACGTTGAAAATCGGGTACCAGTGTTCATGGCGGCATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATACGCCATTTAGAAAGTTGTCTGATCCGACAATTTGGCTGAGTACGTG # Right flank : AGCACGAGCAAGTTCTTGAGATGCCAAAAAGTTCATGGCGGCATAC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.57, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4-513 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRII01000117.1 Acinetobacter baumannii strain Abau971 971_S81_R1__paired__contig_117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 4 30 96.7 30 .............................A TTTTTAATTTACTTTTTCTTTTATTTTATT 64 30 96.7 30 ............................A. CTTAAATCTTTTCAAGTGCTTATGTGATAA 124 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 184 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 244 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 304 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 364 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 424 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 484 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== ============================== ================== 9 30 89.6 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : AATG # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 3.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.48, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //