Array 1 3020349-3019099 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019417.1 Salmonella enterica subsp. enterica serovar Wandsworth str. SA20092095 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3020348 29 100.0 32 ............................. GTTCTTTTGGTGCTTAATGCTAATCACGAATC 3020287 29 100.0 32 ............................. GAATAGAAATACCATTCCCTCCAGAGGTTAGT 3020226 29 100.0 32 ............................. CCGATAGCCAGATAGCAACAGACATCATCTAT 3020165 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAT 3020104 29 100.0 32 ............................. AGCTATCGCGAAACGGTTTCGTAAGCCGTGAT 3020043 29 100.0 32 ............................. TTTGTGGCCCCGTATACCGTATTACTTGACCA 3019982 29 100.0 32 ............................. CCCCACCTGCGGGCAGACAGTTGAATATTTTG 3019921 29 100.0 32 ............................. ATCGAACGTGGGATATAGAAATAAATAGAGTA 3019860 29 100.0 32 ............................. ATATGCGCCGCCTGGCGAAAAAAGCAAAACAA 3019799 29 100.0 32 ............................. GCGTCGGCCATTTCTCCCAGCTCCGGCACACC 3019738 29 100.0 32 ............................. GGTGCCCGTCGCCAGCCGCTTATTTTTGGCAT 3019677 29 100.0 32 ............................. ACAATTTACGCAGATTTTCGCATTAGTGTTAG 3019616 29 100.0 32 ............................. CGACAGCCGTCAATCTCCAGGAACAAAACGCC 3019555 29 100.0 32 ............................. CGACAGCCGTCAATCTCCAGGAACAAAACGCC 3019494 29 100.0 32 ............................. ATGTAGAGTTTGGTTCTGTTAGCCTTGGGGCT 3019433 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 3019372 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 3019311 29 100.0 32 ............................. ATATTCAAACGGCGCGGGGGGAGACATCCGGA 3019250 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 3019189 29 96.6 32 .............T............... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3019128 29 93.1 0 A...........T................ | A [3019101] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3038137-3036645 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019417.1 Salmonella enterica subsp. enterica serovar Wandsworth str. SA20092095 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3038136 29 100.0 32 ............................. GGTTAAATGACGCCATAATTTGATATTCCTTA 3038075 29 100.0 32 ............................. CCGTTCCCTCCACAAAGCAAGATAGAGCGCAG 3038014 29 100.0 32 ............................. CACTGGATTTGAATTATTTATTTCACTTTCAA 3037953 29 100.0 32 ............................. GACTCGGTCTGTTTTTTGATTTTGGCAATCAG 3037892 29 100.0 32 ............................. GACGTCGCTATTGATCGGGAAAAGGAGCGTCG 3037831 29 100.0 32 ............................. ATCCGCTCCATGTCTTCGGGCAGTTGGCTACA 3037770 29 100.0 32 ............................. CGCATTATGATAAAGTTCCCGCCCGTAACTCA 3037709 29 100.0 32 ............................. CCGTATCGGGTATTTAATTTTTACGTGAGAGA 3037648 29 100.0 32 ............................. ACCAATAGCAAACTAACAGACGAGCAGGTGAG 3037587 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 3037526 29 100.0 32 ............................. CGCGCCGTGCTGGTAGGAGGCACGGAGATAGA 3037465 29 100.0 32 ............................. CGCCATGAGTGGCCGACAACGCCGATTATCTC 3037404 29 100.0 32 ............................. CTCTGGCTGAGGTTAGAGCGGCTGGTCGCCGC 3037343 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 3037282 29 100.0 32 ............................. TCGAAACTACGCACGCCGTGTGCCGTGGGGAG 3037221 29 100.0 32 ............................. TGATTATTCCAGGGAGAGGCGGACCGAAAAAC 3037160 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 3037099 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3037038 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3036977 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3036916 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3036855 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3036794 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3036733 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 3036672 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //