Array 1 43057-44183 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLTQ01000014.1 Escherichia coli strain MOD1-EC5064 MOD1-EC5064_14_length_134577_cov_64.3272, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43057 29 96.6 32 ............................T TCATCTTCTTCCTCCCAGCGCTGCCGCTCCGC 43118 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 43179 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 43240 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 43301 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 43362 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 43423 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 43484 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 43545 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 43606 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 43667 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 43728 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 43789 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 43850 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 43911 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 43972 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 44033 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 44094 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 44155 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCTAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69883-70948 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLTQ01000014.1 Escherichia coli strain MOD1-EC5064 MOD1-EC5064_14_length_134577_cov_64.3272, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69883 29 100.0 32 ............................. CGGGGTCATAACTGGTTTTAGCCTGCACTGCA 69944 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 70005 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 70066 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 70127 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 70188 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 70249 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 70310 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 70371 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 70432 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 70493 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 70554 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 70615 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 70676 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 70737 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 70798 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 70859 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 70920 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //