Array 1 14414-9758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTL01000002.1 Bifidobacterium merycicum DSM 6492 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 14413 36 100.0 30 .................................... AGACGACCATCGAACGCATGATCCTCAAAT 14347 36 100.0 30 .................................... CGCCGGCTTGAACACGATGTTCGGGATCTT 14281 36 100.0 30 .................................... CCCCCGCAGTGTATGAGACGATAAAGGACT 14215 36 100.0 30 .................................... TCACGCCGTCATCCTCGTCCCCGAAGCGTA 14149 36 100.0 30 .................................... CTGACCGTATCGCGCAACCTCATCAGCCAA 14083 36 100.0 30 .................................... CGATGAGGTCTTCGAGGTACCTCTGCCTCA 14017 36 100.0 30 .................................... ATTGTGGAAGGCCGATAATCAGGGCGTGAT 13951 36 100.0 30 .................................... TCTGCGTTTCGGCCGTATTGTATGATGAGG 13885 36 100.0 30 .................................... CTGACCGTATCGCGCAACCTCATCAGCCAA 13819 36 100.0 30 .................................... CGATGAGGTCTTCGAGGTACCTCTGGCTCA 13753 36 100.0 30 .................................... ATTGTGGAAGGCCGATAATCAGGGCGTGAC 13687 36 100.0 30 .................................... CAAATTTCTTCAAATATTCCCATAATTCAT 13621 36 100.0 30 .................................... TCTCGGTTTCAGTCGCACGCATTGGTCGTG 13555 36 100.0 30 .................................... GAGGTGACTGTCGGAGAGAGGGAGGATGGT 13489 36 100.0 30 .................................... GGAACGCCGACGACGAGTATCGAGAAATAA 13423 36 100.0 30 .................................... TGACCAGACGGGTGTACATGCGGACTGCGG 13357 36 100.0 30 .................................... AGTCCTGCTCGAATCCGAGCGTGTCCATCA 13291 36 100.0 30 .................................... CGTGAGCGTGAACGTCAATGTTGATACGGT 13225 36 100.0 30 .................................... GGAACGCCGACGACGAGTATCGAGAAATGG 13159 36 100.0 30 .................................... AGGACGTGTTCGCACTGCCACGTGTGTATG 13093 36 100.0 30 .................................... CGTTAATGGAGTAGGTTTTGCGCCTGCCGG 13027 36 100.0 30 .................................... AGACATTGTGAACGTGTACGCTGTTCGCAT 12961 36 100.0 30 .................................... TTTGAAAATCTACTCCCATTTTGAACCTTT 12895 36 100.0 30 .................................... CGGCCTGCTCGAATCCGAGCGTGTCCATCA 12829 36 100.0 30 .................................... ATCTCCAAGGCCCAGGACAAGCAGAAGACC 12763 36 100.0 30 .................................... GCGATGCCGACCTGCGCGATGCAAAACTAT 12697 36 100.0 30 .................................... TCTTGACGATGCCGTTGTTCGTCACCTCAC 12631 36 100.0 30 .................................... GTGACCATAGGCTTGCATGGTTGGCTGCGG 12565 36 100.0 30 .................................... CATGGTGCAACGCAGCTGGTTGTCCCAGAT 12499 36 100.0 30 .................................... AATCGCCCGCGAACGCCCTCAACATCCCGA 12433 36 100.0 30 .................................... ACAACCAATTGCGTTGCACCATGATCGACG 12367 36 100.0 30 .................................... GTTCCAAGCGAGCATGGTGCCGAACGCCTG 12301 36 100.0 30 .................................... TACCCGCTTCGCCATCGAACGCAGTCAGCA 12235 36 100.0 30 .................................... CGATCAGCTTGAAATACTGGTTGATGCGCA 12169 36 100.0 30 .................................... TCTTACACAGACCGAAATTGCACGAGCTCT 12103 36 100.0 30 .................................... TGGTGGTGCTCGGCGAGTATTCCGTGTTGA 12037 36 100.0 30 .................................... TTTCCCTTTCATATCAGTCGGATTCGGTTT 11971 36 100.0 30 .................................... CGGGCGATGCCGATAGCGATGAGGACATCA 11905 36 100.0 30 .................................... CCAATATCACGTCTGATGGCGTTGTGACAG 11839 36 100.0 30 .................................... TATAGAAATCCGGGGTATTTCGGATTGCCT 11773 36 100.0 30 .................................... TGTTGCCCGCATGCTAATATTGAGCCGTAC 11707 36 100.0 30 .................................... GCAGCTTAGCGGATACGCACGCGAACATTG 11641 36 100.0 30 .................................... CGGCAGCGGTGGCACCGTCACCCAGCAGTC 11575 36 100.0 30 .................................... GGCTACAGCCGGTACTCGACGCGATCGGCG 11509 36 100.0 30 .................................... GTTGGGACTGTGTCGCATAGTTACTCATAT 11443 36 100.0 30 .................................... CGTGGCTTCCAACGTAAGCTCTGTGATTCG 11377 36 100.0 30 .................................... AAAACAAAACCGACAAACTTACAAAGGGTC 11311 36 100.0 30 .................................... ACACCCGATACCTTATGAAAAATTCCGTCA 11245 36 100.0 30 .................................... GACCGCGCGCGCCGACAATGAAGTTCCACG 11179 36 100.0 30 .................................... GGTGTTGTCGCCTATGAGATAGTATCCTTT 11113 36 100.0 30 .................................... TACAGCCCGGTAAAAGGGGATGTTGCGTTC 11047 36 100.0 30 .................................... TTCGATGATTCCGGCCTGCGCCGTGATGCT 10981 36 100.0 31 .................................... TACCCTATCGGATTATCCAAGTACCAACGCT 10914 36 100.0 30 .................................... ATATCGAGAACGGTTTGCAATGCCGCTTTC 10848 36 100.0 30 .................................... TTTAGCAGTAGCACTAGCCCTACAAGATGC 10782 36 100.0 30 .................................... TCTGAGTCGTTTCGACCTGCTCGTAATCGA 10716 36 100.0 30 .................................... TGGCCTTGAGTGCGGCGATATCCTTTTCGA 10650 36 100.0 31 .................................... CCAGATCTTCAGCACCACCAACACAGACCAT 10583 36 100.0 30 .................................... TACTAGGCAAGTAGAGAGGATATGACCATA 10517 36 100.0 30 .................................... GTATCCGGAACTTTGTCGATAATAATGATT 10451 36 100.0 30 .................................... CGTGGCTTCCAACGTAAGCTCTGTGATTCG 10385 36 100.0 30 .................................... GCTGAAACTGATTACCAGCGAACACCACGA 10319 36 100.0 30 .................................... CAAGGGCGTTAAACCCGTGTTCGAAAAGAA 10253 36 100.0 30 .................................... AGAGACGACACGCCGTGTGGTGTTGACGTG 10187 36 100.0 30 .................................... CCCATTTCTGTGACTTAGCCTCTAGTGTTT 10121 36 100.0 30 .................................... GTGATTGTGAGCGAGTACACGTGTCCAGAG 10055 36 100.0 30 .................................... AGCTGGTACTAGCGTGACTACCAACCTTGT 9989 36 100.0 30 .................................... CGGTCATGCTGTGGGATTGCGCATTCTGCG 9923 36 100.0 30 .................................... CCGGTAGAGTTTTCTTGATTTTCCTCATTA 9857 36 100.0 30 .................................... AACAAGGTGGCCGAGGCCATCTACCTGCGC 9791 34 91.7 0 ...........................T..--.... | ========== ====== ====== ====== ==================================== =============================== ================== 71 36 99.9 30 GTTTCAGATGCCTGTCAGATCAAGGACCTAGACCAC # Left flank : CCTGTCAGATCAAGGACCTAGACCACCCGCGCCGTCATCCTCGTCCCCGAAGCGT # Right flank : ATGGGGGTGTGTTGGGGCCGTAGGGGATGTTGGTTTCAGAGGTGACAAAGAAGAGTCTTTTTTGAGCCGATTGTCGCTAGGAGCCGTTCTTCTCGTCTCGGGGGGCTATTGCAGTGTTTGCGACCTGTTGTCGAGTCTTTCCTTCTATATCACATCGTTTACTTATATCGGGCTGGTCATGGGAGCGGTGACAGGCGGAATTTTGGGGCTTATTTTCCTTCCTGTAGCTCTTGCGGAAGTGGTGCTCATGGTTGGAATCGCGTTTTGTCTTGGACCGATTGCTCAGACATTGCTCTCGTCAGTGTTTTTCGATGGAGGTCTCGGTCGGCAAATTGTATTGCTGCTAATGAAGACTGGTTCAGCGCTTCTTTCGATTTTGCTTTGCTGCACTATTGTCGACATGTATCCCAAGTGCTATGGATTTGTTTTTGGCGGAACAACAATTAGCCAATCGATTATCCTATTATGGCTTCGGTATACGATGCCTGCTCTGATTTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAAGGACCTAGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 394-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTL01000003.1 Bifidobacterium merycicum DSM 6492 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 393 36 100.0 30 .................................... CCGCGCTGTTATCATCGTCCCCGAGGCGTA 327 36 100.0 30 .................................... GTTGCGACGAACACCTATGATTTCGATACG 261 36 100.0 30 .................................... CCTTGCTCGACCTTATCCAGGACACTCATA 195 36 100.0 30 .................................... CCAATATCACGTCTGATGGCGTTGTGACAG 129 36 100.0 30 .................................... TATAGAAATCCGGGGTATTTCGGATTGCCT 63 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTCAGATGCCTGTCAGATCAAGGACCTAGACCAC # Left flank : GATGCCTGTCAGATCAAGGACCTAGACCACTCCGGCTTATCGTTGTCGGAACCGTTGCGG # Right flank : CACGTAACCCCTCATGTCCTGTAGCTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAAGGACCTAGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 723-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTL01000004.1 Bifidobacterium merycicum DSM 6492 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 722 36 100.0 30 .................................... CTCTGGAATGGTCGAACGTGTCATCCTCTA 656 36 100.0 30 .................................... TCGAACTGGTACGACTGCCACACGTCCAGT 590 36 100.0 30 .................................... GACGTTTACCGGGGCGAGCATGGCCAAGTA 524 36 100.0 30 .................................... TCACCGAGCGCCTTGGGGTGCAGGTATCCC 458 36 100.0 31 .................................... CCAGGACTTTTGCAACACTATGGTCGCGCTT 391 36 100.0 30 .................................... ACCAAGTCTGGGCGAACTGCTCGACCTGCT 325 36 100.0 30 .................................... GGAATTCGCCCCCGAGTTGGTCGGCAGCGA 259 36 100.0 30 .................................... CGCGACACGCCGACAACCGGCAAATTCACT 193 36 100.0 30 .................................... CGCATACTAGAGAGAGGTAGGATATTATCA 127 36 100.0 30 .................................... TCACATCAGGCTTCACCCGATAGAAATCGA 61 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 100.0 30 GTTTCAGATGCCTGTCAGATCAAGGACCTAGACCAC # Left flank : ATTGCGCGGGAGTACTAGATTATGATGCTTTGTTTCAAAAGGCTGCACTTAAGAAGTTAAATGACGGATTTAATCCTGAAGAATTGAGTAGATTATTGTTGTTGCAAACTGAGATAAAGTCGATTATTCAAGAAGAAATATGGAGAGAGGATTTGCCTCTGAGTATTCTTGATGAAGTTGACATAAAGTCAATGATAGCAATGGCTAAACCGCGTGTTGATACCAGTTCTCTGGGCTCTCTTTATGATAAAATTCAACTGGTAGTTGATACTGCCGGCGCTCTTGCCGAGAGCAGGATGCTTGTGATGCTTCATATAACTCAATATTGTGATAACGACCAATTACTTTATTTGCATCGAGAATTATTAAGACACCATATGCAGCTTCTTGACCTAGAATGCTGCGACAAAAAAGTCCTTTTGACAGAAGGAAGAAGCGAGTATATCGATGGAGACTATGTTCAGTTCTCATAGAACGTTCAGGATTCTCCAAGGCTATCA # Right flank : CCCGCGCTGTTATCATCGTCCCCGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAAGGACCTAGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //