Array 1 372-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETXL010000128.1 Micromonospora fiedleri strain MG-37 MFI_NODE_136_length_372_cov_0.942857, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 371 27 96.4 33 -........................... TGTGGCCGCCGACCTGGACGTGCGGCTGGCGGC 311 28 100.0 34 ............................ ACGCCGCCGACCACTGGCCGCCGTCGCAGTAGCC 249 28 96.4 33 ....C....................... CTGGTCCGACCTGGACACCAGCACGGCCACGAA 188 28 100.0 33 ............................ GGTCCGGCCGACGTCGGGGTCGATCTCCTCGAC 127 28 100.0 33 ............................ TGTGGCCGCCGACCTGGACGTGCGGCTGGCGGC 66 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 6 28 98.8 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : | # Right flank : CACGCCGCCGACCACTGGCCGCCGTCGCAGTAGCCCTGC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [15.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C/E [Matched known repeat from this family], // Array 1 613809-614507 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETXL010000006.1 Micromonospora fiedleri strain MG-37 MFI_NODE_6_length_615150_cov_240.070516, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 613809 29 100.0 32 ............................. GACCACCGCAGCGCACTCCGCGCCAACCTGGA 613870 29 100.0 32 ............................. CCGCCACCAACATCATCGTCGCGGACGGGACT 613931 29 100.0 32 ............................. CCGCCACCAACATCATCGTCGCGGACGGGACT 613992 29 100.0 32 ............................. CCGCAGGTACGGCAGTGATCGGCGTCGTACTG 614053 29 93.1 32 ....G.......................G TCCTCAGCGCTGCACTCCGGCAGCGTCTCGGC 614114 29 96.6 32 ............................T GGCTAAGTAGGTTCGGCGCAATTCTGACTTAG 614175 29 100.0 32 ............................. TTGTCCGGCAGCTCGGCCAGGTGCACGCTGAT 614236 29 96.6 32 ............................G CAGCTGGGCGTCCCGTACGTGTGGGGCGGAGT 614297 29 100.0 32 ............................. CGTCCAGGAACCCCCCGGGAAACCACCCAGGA 614358 29 100.0 32 ............................. GTCGTCAATGGGGTCATCGCCACCGCCGGCCC 614419 29 100.0 32 ............................. GCGGCGCCCATCCTTACCTCCACGCTCCAGGC 614480 28 96.6 0 .................-........... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : CGTTTCCAGTGGTCCGAAATCTCCGAGGATGATGCGATCCGGGATCTGCTTGATGAAGTTGCCCAAGCATTACGGGACTGACTTCAGGGGCTTGTCGGCGTACCTGGGCGAAGGCCTTGGTCGGGTCGTATAGCTGTCCGGTGGCCAAGCAGTGATGGAGACAGCCAAGTAGCCGGTTGAACAGGTGGCGTAGGGCGGGCCGTTCGGGATTCATTAGGTAACGGGGGCGCTGTCGGCGCACAGCGTCGGCATCCCCGTCCCATGGTTGCCCTCCGTAGATGCGATCGTCGGGCACCCTGTCTACACACCACATCGACCGCTCCGGGACGGCCACCATGTCGCCTCGACGACGAGCCGTTCGACGCTCCCCAGAACCGCTACGCTGGACCCCGACCACCAGCAGGCGACCGGACACGTAACCCCACAGGAAGCAAGAGGATCTTGCAAATGAAGTAAAGAAAATCAGCTCACTTGATCTCTAGAACCACAGGTCAGGAAGT # Right flank : CAGGCCGTGGACCCAGGACCCGGCCGACTGTCGGCGCCGCGTGGAACTGGCTATGGCACACATTCTGGGAGTCGCGTTCGTCGGGGTTCGGGTTGGGTGCCCGGGGTGAGGACCATCTCGGCGTTGCTTCCGCAACTGATCGGCCTGCGGCTGGAAGCGGTGGTGGTCCGGGCGTCGGAGTCAGGATTGCGGCGGCGTCGCGGACAGCGCGGGCCTCGTGCGTGGCCTGTGGGACCTGGTCGGGCAGTGTGCATCGTCGCTATATGCGGCGGCTGGCCGACGTCAGGTTGGGCGGCCACGAGGTGCTGCTGGCGTTGACGGTCCGCCAGTTTAACTGCGTCGATAATGGATGCCGGCGACGGACGTTCGTTGAGCAGGTACCCGGGCTCACACGTCGGTATGCCCGTCCCACGGTCCTGGCGGTCGGTGACCTGCAAGCGGTCGAGTTCATCTGGGGCTGTCTTCTTCGCCTGGTTTCGGGATCGCCACCGAGGTGTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10552-12166 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETXL010000017.1 Micromonospora fiedleri strain MG-37 MFI_NODE_17_length_61185_cov_283.533083, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10552 29 100.0 32 ............................. ATCCAGCGTGAGCTGGCCGAGGAACTGTTGGG 10613 29 100.0 32 ............................. GTCAACACCGGACCCGTCTTGTCCTTCGAGTC 10674 29 100.0 32 ............................. GGCTGGCACTGGCACGACGTGTACTGCTGGAC 10735 29 100.0 32 ............................. GGGCTGGACAAGGTGGCCGGCGCCGGGGACCG 10796 29 100.0 32 ............................. GTGTTTCCGTGTTCACGCCCTGGGACGCTACT 10857 29 100.0 32 ............................. GACATCATGCTCCAGCCGAGGCAGCACGAGTT 10918 29 100.0 32 ............................. GCGCAGTCCGTCATCGGCTGGGGCCCGTCGTA 10979 29 100.0 32 ............................. TGCACCGCGACATCGCCGCCGCCCGCCGCATC 11040 29 100.0 32 ............................. TCGGCCAACGTTTACATCGACTCGGGGAACAA 11101 29 100.0 32 ............................. CGGGAGGAGCCGACGATCACCATCGCCGAGCT 11162 29 100.0 32 ............................. GGCATCGACGGCACGGTGGTGGCCTCGCCGGA 11223 29 96.6 32 ............................G TGGGACATCGTCGGCAACCAGCGGTCCTGGTA 11284 29 100.0 32 ............................. GCGCTACCCGCCACCCACACGGCGAGGGTCTG 11345 29 100.0 32 ............................. GGGATGTGCGTGGGTTTCTGGCTGGCCGCCCA 11406 29 100.0 32 ............................. CATCATCGCGGGCGCCGCTCTGCTCGTGTCTC 11467 29 100.0 32 ............................. GTAGCCGAGGAACGCATCCACGTTGGTGGGGG 11528 29 100.0 32 ............................. ATGGTGATCCGCTTCGACCCCGGGATCAGCGT 11589 29 96.6 32 ............................G AACCCTCTACCCACAACCCCTTGACCCAGAGT 11650 29 100.0 32 ............................. ATCCACGCGCAGCCGGTGACGGTGGCGGGGAC 11711 29 100.0 32 ............................. GCGCGGGCGGCCCACCGGTCCCGGGTGCGGTC 11772 29 100.0 32 ............................. ACCGCTGCCACCGGGCGGTCCCGGCCGAGCAG 11833 29 100.0 32 ............................. GACGACTGGAACTGCGTCCACGCCGTGGAGCC 11894 29 100.0 32 ............................. CGCCCAGGCGCGTCAGCCTGGTCGCGCAGTTC 11955 29 100.0 32 ............................. ATTGCAAACATCATCCGCCGATTGGTGGTGCC 12016 29 100.0 33 ............................. GGGAACCACCTGCCGGGCAGTGGCCTTGGTGGA 12078 29 96.6 32 .......G..................... GCCTGCCGGAGCTGCGCGGTGTTCTCGGCCAC 12139 28 82.8 0 .................-......GCGG. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : ATCGCCGGCGTCATCTCCCGCAGCGACAACCGGCGAATCGCCGGACGCGCCTCCAGCACCGGCAACGGGGCTATACGCATCGACGTCCGGCGGCTGTCCATTCCGGTCGTGGCGCTCGAACAGCAGCACGCGTACGGACACGCCTTCCGCCAACTCATCGAATTCCGCACCACCCTGGAACGAGCATCAGCGACCGGAGTCACACTCGCCCACGAGATCAGCGACGCGCTGACATCAGGCACCCTTGGCCTCACATCCTGATCGACCCCCGATGAAGCTGGGCAGTTCGGCAGCCAGGAGCGACGACCAAACTGGTCGTCCAGAATCGAGCCGCCCGAATCTGCGGCCCTACCACCCGCGATTCGCCCGGTACGCTGCTCCCAGCCGCACATCAACAGGCACGCGCCGCCCTCGCAACACGAGTGTCGAAAGGGCCGATCTTGCGAACCAGAGTGAATGAAATCGGAGTGGTTGATCTATAGCGCTGCAGGTCAAGAAGC # Right flank : CCACGCGCACTACCCGCATCCTCCTGGTGACCGACCGGCCATCATCTCAATCTGCCGACAGCCCGCCTTCGAGGAGTTGCCTAATCAGTGAGGCCGGGAGCTGCCCGCCGGCTGGCAGAGCGCCCGCGAGAGCCCGCTATGACCGATTCGGCGAGGTCGAGCGCGCGGAGCAGAGTTCTCAGCTGCGCCGTCGGCATGGTGCCGTGGTCCAAGCCGCATGCTGATACAAGCGCCTTGAGCTGGTTCGCCGGGTGGTGGCGGGTGGCCGCGAGGCAGGTGGGGCGAGTCAGCAGATCGCGTGCGGCGTACCCGTCGCCCGCAGCGTGGTGGATCAGTTCGACGGTAATCTGCTCGGCAGCTGGGTGATCTTGGCCGAGGGTGTCCAACAGGGTGAGGCCGAGCCGGGTGTGGAAGACAGTAAGTCCGGGCTTGGCGGGTCCGAGGGCGTGGTAGGCGGTCAGCGCCCTGGCCTCCTGGTCGTCTGCGAGGTTGGAGTCCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36640-32643 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETXL010000020.1 Micromonospora fiedleri strain MG-37 MFI_NODE_20_length_51892_cov_279.984333, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 36639 29 100.0 32 ............................. ATGGTTCTGCGGCCGGGGGAGTCGGTGATCGT 36578 29 100.0 32 ............................. ACCCCACCCGCGCCACCGCCGCCCGTATCGAC 36517 29 100.0 32 ............................. TGACGGTCACACCACGTCTCAATCTCCCGTGA 36456 29 100.0 32 ............................. AGCTCGGCCGCGATCACCAGGCACGCCTCTTT 36395 29 100.0 32 ............................. CCTCCGCCGCAGAACCCGCCTGGTGTGGTGGA 36334 29 100.0 32 ............................. TGGCTGTCGTAGGCGACATTCACCTCAGTCGA 36273 29 100.0 33 ............................. AAAGGAGCGGCCCCCCCGGAGACTCCGGGGGGC 36211 29 100.0 32 ............................. TCGTCGGGTACTGCTCGACGCTTCGCAGTCCG 36150 29 100.0 32 ............................. CACAGACGGGGCCGTCACCGACGTGAACCGGG 36089 29 100.0 32 ............................. TCGTGTGGGCTGGGTGGTGTGACGGCGTGCTG 36028 29 100.0 32 ............................. TGGTGCAACTGTTCGGCGACACGGGCTGGCTG 35967 29 100.0 32 ............................. TGGTCCGACCTGGACACCAGCGCGGCCACGAA 35906 29 96.6 32 ............................G GTCCGGCCGACGTCGGGGTCGATCTCCTCGAC 35845 29 100.0 32 ............................. GTGGCCGCCGACCTGGACGTGCGGCTGGCGGC 35784 29 96.6 33 ............................A CGCCGCCGACCACTGGCCGCCGTCGCAGTAGCC 35722 29 100.0 32 ............................. TCATCCAACCGCGCCTGGGTGGAGGCGACTAC 35661 29 96.6 32 ............................G CGGTAGAGGCGGGTACTCCGGCCGGTGTAACC 35600 29 96.6 34 ............................A ACTGACTCGCGGACGAAAAAGGAGCCCCGGCCGC 35537 29 100.0 32 ............................. TGCACTCACCGTGTCTCCGCATACCTGCCCGG 35476 29 96.6 32 ............................G GCGTCCCTGTTGAAGAAGTACGGCCCGTACTG 35415 29 96.6 32 ............................G GCGGCGGCCTGTCCGGCATGGAGGCGACGTAC 35354 29 100.0 32 ............................. CAACATGGTCCACGTTCACTCCGTGGCCGTGC 35293 29 100.0 32 ............................. GTGGCCGCGTACAAGCGACCCCAGCGCCATTG 35232 29 100.0 32 ............................. ATGGACCTCCAGTGGGGCGTCCGGAAGGTCCT 35171 29 100.0 32 ............................. CTCCGCGGCGGCCAGCCATTCCGGGTGGGCGC 35110 29 96.6 32 ............................G TCTCCGAAGTGATTCCCCGAAGTGACCCGTTG 35049 29 100.0 32 ............................. ATGGCGATCAGCTTCGCGGAGCAGATCAACAA 34988 29 100.0 32 ............................. CATCCGGATCACGCTGAGCACGCGCCCGGAGC 34927 29 100.0 32 ............................. GACCCCGCGTCGGTAAACCAGTCGACGGCCGG 34866 29 100.0 32 ............................. GTGCGGTTGCCGACCGCCCGGATCCGCCACCA 34805 29 100.0 32 ............................. TGATCGTGCAGTACGTAGTGGTGCTCATGAGC 34744 29 100.0 32 ............................. TGCACGATCAGTCCCCGCTGGTGGGGTCGTAG 34683 29 100.0 32 ............................. AAGGTGTCGAACCACCCGGTGTTCGACGTGAT 34622 29 100.0 32 ............................. CTGCGCGAGGAGATCGAGGATGCAGGCGGGGA 34561 29 100.0 32 ............................. CGGGAGCGCTGGTACACGCAGCGCACCCGCCC 34500 29 100.0 32 ............................. CGATGTGACTCCGGCAGCAGCCGCCCCCGAAT 34439 29 100.0 32 ............................. CGCCCCCACCCTGTGATCGCGGGTAGGGGCTG 34378 29 100.0 32 ............................. GTCGACCTTGAAGCCGTGCCGGCCGAGGCGCC 34317 29 100.0 32 ............................. GCGCTACGCAGCACGTACATGGTGGGCGGAGA 34256 29 100.0 32 ............................. ACGCTTTCCTGCCGCAGGGGGCTCCCACCTTG 34195 29 100.0 32 ............................. CTACTCATCCAGCTGCGGGCCGGTGACCTGGC 34134 29 100.0 32 ............................. TTGGGTGCCTGCGCGTCGATACGCCCGGCGGC 34073 29 96.6 32 ............................G GTGCTGCCCGGTGTCGACCGGGGCGCGTTCCT 34012 29 100.0 32 ............................. TGCACCGTCAGATCCGATTGGGTGAGCAGCTT 33951 29 100.0 32 ............................. CCGATGGAGGCACAGCCGGTCATGGTCGGAAG 33890 29 100.0 32 ............................. CGCCCGGTACAGGCCGTGGATGTCGACCAGGC 33829 29 96.6 32 ............................G TAGACGCTGCGGCGGTACCGGTAGGGGGTGAG 33768 29 100.0 32 ............................. GTTGCCGTCATGCAACGGCCGACGGACGTCAG 33707 29 100.0 32 ............................. CTTCCCGGAGCTACCGCCGCCGAACCGGACTT 33646 29 100.0 32 ............................. TCCGCAAGTGAGCCTGAGGAGGACTGGTGAAG 33585 29 93.1 32 .......A....................G AGCAGCGCGCAGGCGCTGCTGATCCTCTGGGG 33524 29 100.0 33 ............................. AGCCCGGCGGACCCTGAGGTCTACGTCCGGGCT 33462 29 100.0 32 ............................. GCGTCCAGATGCTCCCGGACCCGCTCCTCCCC 33401 29 100.0 31 ............................. TCGCTGCGTCCTGCGGGCTACCGGCGATGCC 33341 29 100.0 32 ............................. TTCCGCCAGCCGATGGTCGGGAACGGCCGATC 33280 29 100.0 32 ............................. CGGGGGACGCCTCCGCCGCTTTCTCCGCTCTA 33219 29 100.0 32 ............................. AGGGCGTCGGAGTGAACGGCGACCCCGAAGCC 33158 29 100.0 32 ............................. CCGCCTCGAACGGCGCGGTCGGCAGCGTGTCG 33097 29 100.0 32 ............................. GCCTTGGGGACGATGACCACCGCCGTGCCTCC 33036 29 100.0 32 ............................. GAGGGTCTTCTCCCACAGGCGGGCGAGCTTCC 32975 29 100.0 32 ............................. TGCCCGGCCAAGGTGCTGCGGCTGCGCTCCGG 32914 29 100.0 32 ............................. CCGTGGCCTTCGCGCGCCGCGCGGCTTCAATC 32853 29 100.0 32 ............................. TGGCCCGCAGCCTGGAAGTGCTGCGGGATGAC 32792 29 100.0 32 ............................. TCGCGGCCCGCCAGATCCGGATCGTGCACCGA 32731 29 100.0 32 ............................. GCCTGCCGGAGCTGCGCGGTGTTCTCGGCCAC 32670 28 82.8 0 .....................-..GCGG. | ========== ====== ====== ====== ============================= ================================== ================== 66 29 99.2 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : ATCGCCGGCGTCATCTCCCGCAGCGACAACCGGCGAATCGCCGGACGCGCCTCCAGCACCGGCAACGGGGCTATACGCATCGACGTCCGGCGGCTGTCCATCCCGGTCGTGGCGCTCGAACAGCAGCACGCGTACGGACACGCCTTCCGCCAACTCATCGAATTCCGCACCACCCTGGAACGAGCATCAGCGACCGGAGTCACACTCGCCCACGAGATCAGCAACGCGCTGACATCAGGCACCCTTGGCCTCACATCCTGATCGACCCCCGATGAAGCTGGGCAGTTCGGCAGCCAGGAGCGACGACCAAACTGGTCGTCCAGAATCGAGCCGCCCGAATCTGCGGCCCTACCACCCGCGATTCGCCCGGTACGCTGCTCCCAGCCGCACATCAACAGGCACGCGCCGCCCTCGCAACACCAGTGTCGAAAGGGCCGATCTTGCGAACCAAAGTGAATGAAATCGGAGTGGTTGATCTATAACGCCGCAGGTCAAGAAGC # Right flank : CACGCGCACTACCCGCATCCTCCTGGTGACCGACCGGCCATCATCTCAATCTGCCGACAGCCCGCCTTCGAGGAGTTGCCTAATCAGTGAGGCCGGGAGCTGCCCGCCGGCTGGCAGAGCGCCCGCGAGAGCCCGCTATGACCGATTCGGCGAGGTCGAGCGCGCGGAGCAGAGTTCTCAGCTGCGCCGTCGGCATGGTGCCGTGGTTCAAGCCGCATGCTGATACAAGCGCCTTGAGCTGGTTCGCCGGGTGGTGGCGGGTGGCCGCGAGGCAGGTGGGGCGAGTCAGCAGATCGCGTGCGGCGTACCCGTCGCCCGCAGCGTGGTGGATCAGTTCGACGGTAATCTGCTCGGCAGCTGGGTGATCTTGGCCGAGGGTGTCCAACAGGGTGAGGCCGAGCCGGGTGTGGAAGACAGTAAGTCCGGGCTTGGCGGGTCCGAGGGCGTGGTAGGCGGTCAGCGCCCTGGCCTCCTGGTCGTCTGCGAGGTTGGAGTTCGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1892-644 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETXL010000024.1 Micromonospora fiedleri strain MG-37 MFI_NODE_24_length_8628_cov_302.608281, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1891 29 96.6 32 ............................G GTCCGGAGGGGTCTCCCAGACGTAGGGGATCG 1830 29 96.6 32 ............................G AGGTCGAGCTGGCCAGCCGCAGCGATCCGGGC 1769 29 96.6 32 ............................G TCGGAGAACCTGCGTAAGCAGCTCGTAATCGA 1708 29 100.0 32 ............................. GAGACGTGCGAGCACCACTGGCAGGAGTACGA 1647 29 100.0 32 ............................. GTCCAGTAGCGGACCCGGAAGCCGTGGGTGCC 1586 29 100.0 32 ............................. GCCCCGAGGAAGCCCTCGGCACCCTCGTCACC 1525 29 100.0 32 ............................. GGCCATCAGCCACCGCCGAACGGATGACCCGC 1464 29 100.0 32 ............................. CGGGTGATCGCCCGGATCGGCCCGGCCGCCTC 1403 29 100.0 32 ............................. GGGGCCAGCTCACCCACGTTGCCGAACAGCTG 1342 29 100.0 32 ............................. GGGGCCAGCTCACCCACGTTGCCGAACAGCTG 1281 29 100.0 32 ............................. GGGGCCAGCTCACCCACGTTGCCGAACAGCTG 1220 29 100.0 32 ............................. TACGTCAGCCCGGCGGCCGGCGTTTCCCTGGC 1159 29 96.6 32 ............................G GTCCGCGAGCTACGGACGTTCGTCTGCTGGTC 1098 29 93.1 31 ...................AA........ TCGCCGGCCACGTCGGGCCGCCGGCACGCCG 1038 29 100.0 32 ............................. CAGCAGCCGACCCAGGTCGAACGGCGGCACCC 977 29 100.0 32 ............................. TGTTCCCTCTGGGCTTCGCGGTCGGCGGTCTC 916 29 100.0 32 ............................. ATCGCCTGTGTGCTGACGTAGGGGGCAAGGAA 855 29 100.0 32 ............................. ATGCACCACACCACCGACAGCGGACGGCACTG 794 29 100.0 32 ............................. GTCGACCACGGACGGATGCCCTGCTCAGCCAA 733 29 100.0 32 ............................. GACTACGCCACCGCCCTCACCGAACTGCCGCC 672 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.0 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : TTTCCAGTGGTCCGAAATCTCCGAGGATGATGCGATCCGGGATCTGCTTGATGAAGTTGCCCAAGCATTACGGGACTGACTTCAGGGGCTTGTCGGCGTTACCTGGGCGAAGGCCTTGGTCGGGTCGTATAGCTGTCCGGTGGCCAAGCAGTGATGGAGACAGCCAAGTAGCCGGTTGAACAGGTGGCGTAGGGCGGGCCGTTCGGGATTCATTAGGTAACGGGGGGCGCTGTCGGCGCACAGCGTCGGCATCCCCGTCCCATGGTTGCCCTCCGTAGATGCGATCGTCGGGCACCCTGTCTACACACCACATCGACCGCTCCGGGACGGCCACCATGTCGCCTCGACGACGAGCCGTTCGACGCTCCCCAGAACCGCTACGCTGGACCCCGACCACCAGCAGGCGACCGGACACGTAACCCCACAGGAAGCAAGAGGATCTTGCAAATGAAGTAAAGAAAATCAGCTCACTTGATCTCTAGAACCACAGGTCAGGAAGT # Right flank : AGGCCGTGGACCCAGGACCCGGCCGACTGTCGGCGCCGCGTGGAACTGGCTATGGCACACATTCTGGGAGTCGCGTTCGTCGGGGTTCGGGTTGGGTGCCCGGGGTGAGGACCATCTCGGCGTTGCTTCCGCATCTGATCGGCCTGCGGCTGGAAGCGGTGGTGGTCCGGGCGTCGGAGTCAGGATTGCGGCGGCGTCGCGGACAGCGCGGGCCTCGTGCGTGGCCTGTGGGACCTGGTCGGGCAGTGTGCATCGTCGCTATATGCGGCGGCTGGCCGACGTCAGGTTGGGCGGCCACGAGGTGCTGCTGGCGTTGACGGTCCGCCAGTTTAACTGCGTCGATAATGGATGCCGGCGACGGACGTTCGTTGAGCAGGTACCCGGGCTCACACGTCGGTATGCCCGTCCCACGGTCCTGGCGGTCGGTGACCTGCAAGCGGTCGAGTTCATCTGGGGCTGTCTTCTTCGCCTGGTTTCGGGATCGCCACCGAGGTGTGGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //