Array 1 2272-2433 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016622.1 Parageobacillus thermoglucosidasius strain Wild Type chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2272 30 100.0 36 .............................. ATATCCTGCATATTCTCCGCATACGTCAGAGTTAGA 2338 30 100.0 36 .............................. ATTTCAACCTCAAGGCTTTCTCCGTTTGCCTGTTCA 2404 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 98.9 36 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : CTAACAGGATATCTCGAATCCGCACAGCAATTTGAAGTGTCACATTTTTTTCCTGCAACCCATTTCCAATTGCTCCGGGATCTGCTCCGCCATGTCCTGGATCAATAAAGATTTTTACCATTTCTCCTCACCTCCATAAATAATTTATGTTTGTTCGCTGGACGTGCCTGTATAAAAAGCTTGTGCATTTGAATCACCACCGTAAAAAAGAAAAAGCCACCTACCTAACAGGCAACTTATTTCCGTTCGTGGCATGCCCTCTCGCGAATAAATATAGGAAAGGGGATTTTTGCACATTCTTTCCTAAAACATTGCATTCCTAAATATAATAAATGCCGTCGACCTCCGATCATGCAGAAAACCCAAGGGATCGACGACAGTTCTTATTCCCTTTTTCCTTAGGAATCTTCATCATTCCCATATATTGACACAATTTTCTTAATAGCGTATACTTTATGTAACATTTCAGAAAAATGCTGATACATCAATATTTTTTTTGG # Right flank : CCGATTCACCCGATCAACAAGAGTTTTAGAACCAAAATCATTTGTATCTCCCTATAAGGAATTAACCCTCTCTGTCCGCTGCCTGACTGGCCTTTGAAGTTTTTGAACGAAATTTGCTAGTGATAAAAAAAATCGATAAAGCCGACAAGTTGTTTTATATTATGAAGGCAAAATGATAAACAAGGTTTCGCTCATGTTAGTTCACTTGTCTTATGGCTCTTGCCGGAATCAGCTGGCTGGGCAATTAGGAACCGGTGTTGCTGCGGCCTGGTTAGGAGCTAGTGTTGGCTGGTTACTTACGATAGTAAGGAGGATATAGATGTATAAAAGTGGCTTTAAAACATTCTGGGCAGAAAAGTCACCATTTTTGCTCGAGGAACTTTTCAGCAACTCACTTTTCTAATTATCTTTTCCCCTCTTTTCACAAGCATGTTTAAGGAAAAAGTTTTGCTTTTTGCCATCTCTGTTTTATTTATTACAATCATTAATTTAGGTGTGGA # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 9937-11297 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016622.1 Parageobacillus thermoglucosidasius strain Wild Type chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 9937 30 100.0 35 .............................. CTTCATCCAGCGTCAAGTCGTTCATTTCACTTGTC 10002 30 100.0 36 .............................. TTGGGTGGCGCTGTCGCGCACTCCCTTGACCCTCAA 10068 30 100.0 37 .............................. TTTCACATTCCGGCGCTTTTGTTTCAAGAACAGCCTC 10135 30 100.0 38 .............................. TCGACGGCCCCTGAATTAGATCAGCTTGGTGGTATCTC 10203 30 100.0 37 .............................. CTTCAAATGGGATGACTCTAACTATATCAGGATTTCA 10270 30 100.0 35 .............................. ATTGAAATGATATGCGACTGGAAAGCTGCGGTGAT 10335 30 100.0 36 .............................. CGCTTTCAAACGCCATTAAATCGTCACCTCCTCGGT 10401 30 100.0 37 .............................. TCTGGAACACAAATGAAAGGAGTAATAACTGGATGAA 10468 30 100.0 38 .............................. TCCGTCGAAGAAATGATTTCTTTGCTATTCCGGCTCTC 10536 30 100.0 35 .............................. AGAATATCCATTGAGTAATTGCACTCGACCATGAT 10601 30 100.0 37 .............................. CACTATTTTTTGTTATTTCGAGTTGAGCAGCTGTTGT 10668 30 100.0 36 .............................. ATGAAAGCACCTTCTTTAGAACGCGACGCTCTCATC 10734 30 100.0 37 .............................. GAAGTAATTAGTCAAGCAATTAGGTGGCAAGGCATGT 10801 30 100.0 37 .............................. TCACGTTTCGAGATATGAGAAAAGAACACGGTCATTT 10868 30 100.0 35 .............................. TGAAGCACCTTGGCGTGAAGAGAAAGTTAAAAAAG 10933 30 100.0 36 .............................. TGACTTCTGCCAAAATCGCTCTATCCTCATTGGCTT 10999 30 100.0 37 .............................. CAGGCGCAGCGAACGCCTTATAGGCACAGCGAACGCC 11066 30 100.0 36 .............................. TCAAGCCGGCCGATTCGCATTCTTTTGGCGGACGAG 11132 30 100.0 36 .............................. TAAACTCAGTAATGTCTGGCTGCCAATCTGCAAGCA 11198 29 90.0 40 .....C...............-...A.... CTAAGAGATCGTTCTCTTCTCTTATCTCTTAGGTTTTTTC 11267 30 76.7 0 ......GC...G.T...G.AA......... | C [11278] ========== ====== ====== ====== ============================== ======================================== ================== 21 30 98.4 37 GTTTGTATCTTACCTATAAGGAATTGAAAC # Left flank : AGTAAAAACGGCCTGCCGAGCTTGACAGTGGTTCCGTGGGAATCAAGCTGCCCGTCAATTGCTTCGAATGGAACGCGCAAAAATTGATATCCCGCTTCATCGGCAATTTTATAATCAAATGAACCATGATCATAATCCCAATTTCCGCCAATGGTATAACCAAGCGGCTTTAACAATTGCTCCAATTGAAATAGAGGAAACGTTTTCCCTTCCAACTGTGATGGAATTTCGATCATCGCAAACAACCTCCTTTTTCACCTATGTTTCCCTATTCGCGCTCTTTATATGATTGTTATGGAATATTGCCTGCTACATAATGCCCCCACACTGTCAATGTCGTCGACCTGGAATAGCGCAGAAAACCCAAGGGATCGACGACATTCCCTTTTGCTGCTTTTCCCAACTTCCATCAGCACCGCCGCATATTGACGAAATTTTCAAAACCAACTATACTAAACATAGCTGCTTTCGAAAAAGCTGATATACCAACGCTTTTTGGG # Right flank : CACTTACTCCGGCTGCCTTCCGATACGCAATTCAGTTTGTATCTTATTATGAGGAGCAAAACAGGTGTGCAGCTGCATTGTTGCTACCTTTGCTGCCACGGTTTATATTGCAAAACTTAAAACCTCGGTGAATCTTGTTTTTTATTGAGCAAGCCATTCTTATTGCATATTACCGTGGGTGTCAGCGAAAATTTGCTACGATAAGCGCGAAACACAGATGCCTGAGACAAAAACACAGCAAAATTACTTTTTTTACAAATAAGATAAAAATCCCTTCCCGCAGCGGAAGGGATTTTTTGATAAGCAACCGGTGGCAAGTAATGTCTTCGCATGCAAAAAACGGAGTGCATGATGCACTCCGAAAATCCGTTCTGTTATTTCAAGCGTTTTTCCAGTTCCGCTTTTTTCTCTTCGTATCCTGGTTTGCCAAGGAGGGCAAACATATTGACTTTATACGCTTCTACGCCTGGTTGGTCAAATGGATTTACCCCTAATAAGTA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 355989-355292 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016622.1 Parageobacillus thermoglucosidasius strain Wild Type chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 355988 30 100.0 36 .............................. CGAGGCTATTTGGAACAGCAGAAAGCCGGAGGCAAA 355922 30 100.0 37 .............................. AAAGCAGCTCGGCTAAAATAAACATGGTTCGCAAAAT 355855 30 100.0 37 .............................. GCTTCCAAATCACAAAAAGAAGTTTCAGCAAACAACT 355788 30 100.0 35 .............................. ATTGACGTAATGCTTTTTCTAGTATGTTTTTAGTC 355723 30 100.0 35 .............................. TTGGCGAGGTCAAGTTCCGTTACAAATCCGTAACC 355658 30 100.0 37 .............................. TTACTTTAGCTGAGTACAAGGAAATTACAGGAGAAGA 355591 30 100.0 37 .............................. CAGCTATCTTGAAAGGTGATTGGAAAGGCGCTTGGGA 355524 30 100.0 36 .............................. CATTTTTGGCAGATGATATTACACTTTTTAATATAT 355458 30 100.0 38 .............................. GTGGATGACAAACATCCAAGCGGCGCCATCACTTATAC 355390 30 100.0 39 .............................. GCGTGCTGATAACATGCGCTGCAATCCCGCGCCATGCGT 355321 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 100.0 37 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TCGTAGCGATTTGGCAGTTTACGAATATATGGAATGAATTTTTATTTGCCGTCACGATCACGACATCTTCCCAGCAGCCGATTATGGTCGCGCTGCAAAACTTATCGGGCAGCCAAATTGTGCAATGGAACGTGCAAATGGCAGGAGCGCTGCTAGCCGCGCTGCCGACCTTGCTTGTATACATTTTTCTTGGCAAATACTTCGTTCGCGGTTTATTGGCCGGTTCGGTAAAAGGATAATCACGCATGCCAGCAAAAGCATAAGAAAAATGTTTGTCGGAAAAAATCATTCCTCTTCTTTTAAGAGCTGACGGGGCTATGCAGGCGATCCGTTTGTCGTCGACCTCCAATCGTGCAAAAATCCCAGGGGATCGACGACAATTTCTTTTTTCCCTTTATCCTTACGGCCATCATCAATCCGCTCTATTGACGGAATTTTCAAAATGGCTTATACTGAATTTAGCCTTCCTGGAACATATTGATTTATCAATATTTTTTGGG # Right flank : CAACTTCGCTGACGCTTTTTGCTGCCACTTTTTGAATGGGTTCAAAACGGATCAGTAAACAAACAAACCGCTGATTTTCAGCGGTTTGTTTGTTGATAAAGGTGTTTTAGCTAAGATTTTGCTGCTTTTATTGAGGTTGATCCTAATATTTTTTCTTCCATAGGTAAATGCAAAACAAATGTTAACAGGGGATAAGAGAGTCCCCATGATTCAACACGATCCGGAAAATTCCGCTATATTCTCCGGTAATCTTAACATCGCCGGCGTCTCTCTGCTCTTTGCTTTGGAAGGCTTGACGAAATCTTCAGCAAAATGATTGCAGGGCATTCCTCGCCTTTGTTTTTTTGCTGTTTGAAGGCTTGTGCGGTATAGTTTTCTTTACACAATAAATGATTTGCTGCGATTGCTGCGATAAGCACTGCCCGGATGATCTTCTGGCAATAAGCTGCTGCCGTAATTAAATAACTTTTCTCGTAACGTTCCCGGTTTGTATTCCGTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 1052869-1054773 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016622.1 Parageobacillus thermoglucosidasius strain Wild Type chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1052869 30 100.0 37 .............................. TGCTGATAATGCGTTAATTATTGACACGAAAAAATCT 1052936 30 100.0 36 .............................. ATCGCGGCCGTAGATGATGTGTACGGAACGTTTCAC 1053002 30 100.0 37 .............................. GCAACGATGAACTCTAATGTATCGTCGTTGCTGTCTC 1053069 30 100.0 38 .............................. CATTTTCCGCTTGGTGAAGCACTAGAAGAGATGCGCAC 1053137 30 100.0 37 .............................. ACTTGGTTGAAAAACCTACTGATGAAAAGATACGAAA 1053204 30 100.0 37 .............................. TGTTTTCTTGAGGTTTTTCTAATGTTAACTGTAAAAT 1053271 30 100.0 36 .............................. TCAGTTGTTTCCTGCTGTTTTTCTTGTGTATCCCCC 1053337 30 100.0 36 .............................. CCACGATGTCATGACATTGTATAGACGTTCCAGATA 1053403 30 100.0 36 .............................. TGTTTTTTCGGATAAGGATTTTGAGAGAGTATTAGA 1053469 30 100.0 38 .............................. CTAATCTCGAACCAGTCCATAAAATAGTCATCGATCTC 1053537 30 100.0 37 .............................. CGGCTATCAAGCGAGAAATAAGCCTCATCGACAATCA 1053604 30 100.0 36 .............................. AGGATTGGAGAACATGCTGACCAACATGTTCGTCCA 1053670 30 100.0 36 .............................. CTGTAGGTATGCGTTGTTCAACATAAGTAGGGAAAG 1053736 30 100.0 36 .............................. AGTCAACAGTTTCAAGTAATTCTGTTTGCTTTCCAG 1053802 30 100.0 39 .............................. TCAGAACTAGCGTAGAGGATAGAACAGGTAGCTATCGCC 1053871 30 100.0 39 .............................. ACGCACCTAGATCACTTATTACCTTATCTGAACTTCGAT 1053940 30 100.0 38 .............................. TGAAAAGTATATAAAGCATTTTAATATTGGAGGCGATT 1054008 30 100.0 37 .............................. TCCGAACGATAGCTTTCCGACACTTTGCCGATGGCAC 1054075 30 100.0 36 .............................. TCCCGCAGGAAACATCTCCTTTGATGAGAGTTTAAA 1054141 30 100.0 35 .............................. AAGGAATATTCGTTCGAATCGTTTTTGCCGCGTGA 1054206 30 96.7 35 ....A......................... TGGTAATATGAAAGTATGGGTAGATCAAGATTAGA 1054271 30 100.0 37 .............................. AACAATGCGGAAGTGATTCCGATTCCGACGCGTCCTG 1054338 30 100.0 38 .............................. ACCGATAACGGTGGAAGTGCTGTTTCAACTATCGCAGA 1054406 30 100.0 39 .............................. TCCTTCCTCATAAAACCCTATACCGAAACGTATGGACGG 1054475 30 100.0 38 .............................. TATCTTTGAGCATGCTTTTCACTTCCCGTTTGTCCGCT 1054543 30 96.7 36 .............................T CTTTTTCATTCATGAGTATTCCCCCTTCTTTGTTTA 1054609 30 96.7 39 .............................T TCAGCCGCCCCGTATCCATATGCTCGTACCATTGGATTC 1054678 30 96.7 36 .............................T TTGTGCGAATCATAAAAAACCCCACTCGTCCGAGTA 1054744 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 29 30 99.5 37 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TACGAAAATCAACATGGAGAAAAGCGGACGCATTTCTTTTCGCCATTTGACGCAGAATTTTCTAAGATGGTAGAAAAAAATTTTTATAATAAATTTCAAGCATATTTTCAACAAGCACCAACGGAGAAGGTGACAATAAGCCCAATCCGCGTAACGAAAAGGGATAAGGTGATTACCGTATTCAAAGGGTTCCGCATTAACGCGTGGAATGGTATGTATGAAATTCAAGCACCGCTCCCTTATGTGAAATTTATGTATGACGTCGGCATCGGATCGAAAAATTCCCAAGGTTTCGGCATGTTCGAATTCATTAAATAGCGGCTATATACTTTTGTCGTCGATCCCTAATAGCGCACAAACCCCAGGGGATCGACGACATGTTTGTTTTCTCATTTCTCCCAACAGCCATCAGCACTTTTGAATATTGACGCAATTTTCAAACTGACGTATACTTTATATATCCATTATTCGCCAACCTTGATATATAAGCGTTTGTTGGG # Right flank : CGTGGTCTGCGATTTGACAGCTTTCGTGTCGCGTGCCTGTTTTATATCTTATGGACCGATTTTGCCTGTTTTTATCTTAGCTACGAAGATTGTCCCCTTCTTGGCGCTTGCCGCTGTGAAGGGCTTTTTTGTTGTAATTCACCGCCACATTTGTTATAAAGGTGAAAAAGGGAAACAATAACAATAAAACAAACATGGAAAGAAGTTTTGAAAGCATGTTCCGTATTCTTAAAGCAGAAAAGACGGTTGATGTTTAAAATGCGGAAGTTTGCTGAATTGGAAGTAATATAACGGAAAGGGTAGAGTGTGGATGGGAGTATTGGACAGTAAAAAAATTATGGAAATAAGAAGCCGTATTGAAAAACGAGTAGTGACGCTGCCCGATGGCACTACTGTTCCATGCATAGGTCAAGGAACATGGCACATGGGAGAAAAGCCCCAAGAGAAAGCGAAGGAAATAAAAGCCTTACAACTTGGAATAGAATTGGGCATGAAAGTTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 2529952-2532186 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016622.1 Parageobacillus thermoglucosidasius strain Wild Type chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2529952 30 100.0 39 .............................. CTCAACGATGAAGAATCCATACTATAATATCTGCAGATA 2530021 30 100.0 36 .............................. TTGTGTGAAGTTCTTTTTCTTCCCCTGTTGTTGAAT 2530087 30 100.0 35 .............................. TCGTACCATTCGACTTTGGTGTATTCGTTGTTGTC 2530152 30 100.0 35 .............................. ATGCGAGAAACAAATCACTTTCTCCAAACAAAAAA 2530217 30 100.0 35 .............................. TCTTTCCACGCTAATGATAAAAACCAAGCCATGAT 2530282 30 100.0 36 .............................. ATGGCCTTCACTGCGGAACGCGGCAATTCGAACCGT 2530348 30 100.0 37 .............................. AATGAAAGAAAACAAAGAAAAAGTCATTGACGTTTCT 2530415 30 100.0 35 .............................. GAGTCTTTAGTTAGGACGTTTTCTGATTCGGAAAC 2530480 30 100.0 38 .............................. CGCTACATATCTATCGAAAGGAGGGACGAGTATGGCAC 2530548 30 100.0 38 .............................. TGGAAAAGGAAGTCGGGCATTGGAAAGAGCTTTTCGAA 2530616 30 100.0 36 .............................. TTGGATATCCATACTTTTCTATCATGGCATGCTTCG 2530682 30 100.0 36 .............................. AGAACACCAGCAATAAATGATTCCCCCGGCGAACAA 2530748 30 100.0 38 .............................. AAGCTGGCAGCGTTCGGCAGGCGCTCCGCCTGTCGAGG 2530816 30 100.0 37 .............................. CGTCGAATTCGAATTTTTCGCCGTAAAAGTCTGTGCC 2530883 30 100.0 36 .............................. AAAGGTGGCCAAGGTGTTTTGAAGCGCGGCACCGTG 2530949 30 100.0 37 .............................. ACAAAGAGCTTGAAAAAATTCCGGTCCGCATCGACGA 2531016 30 100.0 37 .............................. TTTTCTTCTCGGAGCCTTTTCTTTGCGAGCCGTATTG 2531083 30 100.0 37 .............................. CACGATGAAACCACTAGGAATTGTCCGCAAAATCGAC 2531150 30 100.0 35 .............................. ATCGGTCTAACCGATAAACTAGTACAATATCGATA 2531215 30 96.7 37 .T............................ GAACTGTATGCTATATCTTTTTCAATATGGCTGAACA 2531282 30 96.7 38 .T............................ AATGCCCCGACTTGCACGCGATAAACCTTCCCTTGTGT 2531350 30 96.7 35 .T............................ TGTAGGGAAAGCCAGTGGATGGATCGCGTCTATTT 2531415 30 96.7 38 .T............................ AACAAGTAAATATGAATGAACACCAAGCTGCAGCTCTT 2531483 30 96.7 39 .T............................ ACGATAGAATCATGCTTCTATCTAATGAAATGATATTTT 2531552 30 100.0 36 .............................. ACATTTGCAAGGTGGGAAAATGAAGAAAAGTATAAG 2531618 30 100.0 37 .............................. GAGCCGAGTCGCCGCGTTAGTTTGGGGTTGAGCTAAT 2531685 30 100.0 37 .............................. GGCATCTCCCTCGAGGAACTAGCCGCCGCAACTGAAG 2531752 30 100.0 39 .............................. TGGAAGAAAAAGATTTCGAAAATAAAAATAAATAAGGGC 2531821 30 100.0 37 .............................. AATGGCTAGCGGTCGGGAAGCGTGCCGGCCTTTCTTT 2531888 30 100.0 36 .............................. CTCACACCCTACCAACACCTTATCCACAAACTTATC 2531954 30 96.7 38 C............................. ATATATCGAACCTTCACCAACATAGCTCGCTGCGTTGT 2532022 30 96.7 37 A............................. TCGGCTTGCCATCATCAGCGCGTAGGTCGCCATCCCA 2532089 30 93.3 38 C...G......................... GAAGTAATCTTGAAAACAGCAGCACAGGCTGCCTTGGA 2532157 30 86.7 0 .T..................A....A..G. | ========== ====== ====== ====== ============================== ======================================= ================== 34 30 98.7 37 GGTTTTATCTTACCTATAAGGAATTGAAAC # Left flank : GGTGCCGTGTTGATCGAAATCGATGAAAAATGGATGTCAGGGCGCAAATACTTGGATATGGCTGAATATTGGAAGTGGCGGAAAACGAAAGAGCAAGGAGTCCGATCGGTGAATCAGGAGGCTCCGGCGATCAAGAGAGTGGGATAACCTCTACGCCGTGTCAAGGAGAACGTGGAATACCGGAGCGAAGTGAGGATATGCCGCGAAAGCTCCTTGACACGCCTGTTCCTTGACAACATGATCATTTGTCCGGGAAGGCGACCGGCAGGGAGACTTTCCGGTCTTACCTACCATACGTCAAGTCATCAGGTCCATGTTGTCTATCAAAGGGGAATTTACACAATAATTTGGACTTGACCCTCCAGGGGATCGACGACATGTTTATTTTCCTATTTTCTCCGACAGACATCAGCATTTTTTTATATTGACGCAATTTTCAAAACGGCGTATACTATACATATCCATTATCCACCATCCTTGATATATTAGCATTTATTGGG # Right flank : CACTGACAATCTATATCCAAAAGAGCTAACACTTAATGATCCCCCTTTAAGTGGACAGTGTAAAAAGCCCATTTTTAATCAATGGGTGTTCCACTATACTTGGAGGGGATTTTCGCATGAAAAGGATAAATATTTCACCGTTATACAGAGGAATTCCAACAAAGAGTGATTTACATGTATGCAAAGGGAGAAAATTGCTATTAAAAATTAGATGGTGAAATGGTAAATTTAATGGATTATAAAAAAGCGCTAGAACGTATTTTAATGGGAAAGCAAAGAAAAATCGATGTCGGAAGAATCGACGAAGAATATTGCATCACTGTAGTGGGGATTGGTTTGGATGGCAAAGTGGCTGAAGTAAATAATATTTCCAAATACAAAAAATGGTTTAATTTTATTAGATTGGGTGCTCTTTCCTATGTACTTAGTTTCTTGCAAGTTTTATTAAAATACCGCCCTGTCAACATTCAATTAAATGTTGATGGGGAGAAGCTAGTTTT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 2541637-2543933 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016622.1 Parageobacillus thermoglucosidasius strain Wild Type chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2541637 30 100.0 37 .............................. TCAAAGGATACAAATTGAGATGCTTGTTGCAGTACCG 2541704 30 100.0 38 .............................. CACTCACAATGAGCACCCTAAAAATTCAAGTATTCGTG 2541772 30 100.0 38 .............................. TATATAGATCAAACAACAACTCTCTTGGGAGTTCGTTT 2541840 30 100.0 37 .............................. TGGCATTTGTGAAGCAGCGATACCTTTTGCCATCCAG 2541907 30 100.0 37 .............................. GGCGTTCACCCCTTCGATTTTGATTCCGAGGAGGTCA 2541974 30 100.0 37 .............................. AAGGCGTAAGAAAAGAACACTGATCATTAAAATTATT 2542041 30 100.0 35 .............................. TGATTCTTATACCACTTTGAAAAAGCGACAGAATC 2542106 30 100.0 38 .............................. ACACCAGGCATCTTGAAGACCGTGACACTCTTCGTCCC 2542174 30 100.0 35 .............................. ATGACGCAAACCAACGCCACTAATTGCGTCCTCGC 2542239 30 100.0 35 .............................. TTTTCGTTTTGTTTCCGCAGCGAATGAACGTTTAT 2542304 30 100.0 36 .............................. AACGCCGTGTCGTTGCTAGCAACCGACGGCAAAACC 2542370 30 100.0 37 .............................. CAGTTTTGGTTGATATCATCGATGGGGTCGAAAGTGT 2542437 30 100.0 36 .............................. TCGGTTATGCCGCTGGATTCATGGTATTGAAATCCA 2542503 30 100.0 39 .............................. TAAAATTACACATGACTTGGCGAAGAAAATCGCGCAGGT 2542572 30 100.0 37 .............................. TCAAACGGTCGATGATACCGAGCCGGAACCCTAACAT 2542639 30 100.0 35 .............................. GGCGAATAAAATCTGACGAAAATTCGTTCGAGGGG 2542704 30 100.0 38 .............................. TAATAAATATAATTCGTAGTCACACTAGTAACCTCAAA 2542772 30 100.0 38 .............................. CACTACTGCATGCACGAACTCCGCTATTCACCATCACA 2542840 30 100.0 37 .............................. CCAAAATCACTGGACAGTATTGGGTAGGCATACCGAG 2542907 30 100.0 36 .............................. CAAGTCATGTGATATGACGTAAATGAACCGTCTGTT 2542973 30 100.0 37 .............................. GGGAAGTTGCCACTAAAGATGTATCAAAAGACGGAAC 2543040 30 100.0 37 .............................. ATTTCGGTCGAACGAGTGCATCCTCCAAGAATCACAC 2543107 30 100.0 38 .............................. TGTTTATTTAAGAAAGATGAAAGGATTGGCATGTATCC 2543175 30 100.0 38 .............................. TTTTATAAACAAGCTTTTGGTACGGATTTAGTTGGCGA 2543243 30 100.0 37 .............................. AAGCCACGCTGGGCAAACGATGTGCCAAGCCGCAGAG 2543310 30 100.0 37 .............................. ATACAATGTTAAAAGATTTATATGCATTAGGCATGAC 2543377 30 100.0 36 .............................. TCTATTCTTCCGTGATAAAACAAGTAAACTATCTGA 2543443 30 100.0 35 .............................. TTTTGATAGTCTGTTTTCACTTTTTCTAATTCCTC 2543508 30 100.0 35 .............................. AAACGCAGATGGAGGCTTTATCGAAAGGCGTCAAC 2543573 30 100.0 36 .............................. CAAGAAAATTTGAAGATTGGAAAAAAGGATACTTGC 2543639 30 100.0 37 .............................. AGTCGTTCATGGTGTCATACGGAATGACAATATCATG 2543706 30 100.0 35 .............................. AGATCAACCCTCGCGATAGTGATGCGGTCAATCTG 2543771 30 100.0 36 .............................. ACGGAATGGAGGACGCAAAATCATGACGCAAACAAC 2543837 30 100.0 37 .............................. ATGGCGGCAACGCACATTTGCAAGTAACAGAACTGTC 2543904 30 93.3 0 .................G.A.......... | ========== ====== ====== ====== ============================== ======================================= ================== 35 30 99.8 37 GTTTTTATCTTACCTATAAGGAATTGAAAC # Left flank : ACAGCATTCTCTTGACATTGAAGCAGAAGAGATCCCATCTATTCAAACACTAGAAGACATTACACAATATCTTATAAAAATTAATGATTAAAATAAAAAATTTTAAATATAGAAAGAAGAATTCAAACGCCAACAGACAAAGAATAGCTAATCTTAAGTCAACTCGCGCGGCGACAGCTTATTGCCAGCATTCAGCCGCTTGTTATTTTAAAGACAGGCTTTAAGGGTATATAGGGACTGTGGTTGGTCTTTCCTTTTTCTTAATGAATACTTAGCGGTTAATCGAATCAACAATAGATGTTTGAATTCGTTGAATAGCAACGTATATTTTTGTCGTCGATCCCTAATAGCGCACAACCCCCAGGGGATCGACGACATGTTTATTTTCCTGCTTTTTTCTACAAATATCAGTATTTTTCCCATATTGACGCAATTTTCAAACTGGCGTATACTATACATATCCATTATCCACCATCCTTGATATATTAGCATTTATTGGG # Right flank : CACAGAAACTGGAACTGACTATTCAAGATGTGTGCTCTTCCGACACTCTGTGTTTGCCGCTTAACTATGAGAAATAAGTCCTGTACAAAAAGCACATCAAAGGTTGCATGTACGCAACTACCATGATATTCAACCATGACAATTGCTTTTATTAGCGCATTACGGAACCGTTAGTGCGAAAGCCCCGAAATTGTGGGCTTTTTTAGTTTCGTTGTTAATTTTTGTTGATATATGCCGAGAAATTAGTTAAAATTTGGATAGGAAATTAGAAGTAGGAGAAAGGTGGTGGACCGCGGAAAATCGCGTTTCCGTTGTTGATAGTTTCCTAGAGTTTCTTCATCAGCAGCGGTGATGATATAATTGCGGAACGAAAATGTATCAGCATATCGTCATTACATGCGGAATTTCTTTGTTGACTGGAAAAGCGAACGTTTTTTCGATAAACCGTGATGAAACGATGGCGGAAATACGATCGTTACTAGATGTAAAAGAAATCAACA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 7 2553170-2553529 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016622.1 Parageobacillus thermoglucosidasius strain Wild Type chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2553170 30 100.0 37 .............................. TCATCTTACTAGAGACAAAGAAGCTTTCCACGTCGGA 2553237 30 100.0 35 .............................. TATCAACCTCCATTTGATTTTTGAAGGCGATTCCT 2553302 30 100.0 35 .............................. ATGATTTGGCCATCTGTTTGGAATCCTTTGGCCAA 2553367 30 100.0 36 .............................. CTCGGCTGGGAAATCGACGCGAACGGGATGCTTGTT 2553433 30 100.0 37 .............................. TTAATTCTCTGATATATGCCTTCTCCTTTTCATCTAA 2553500 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 99.5 36 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : AAAAAAGAAAAAGAGCGGGAAGCAAAAAAGCTTTTAGAGGAACGTGAGAAAGAACAAGAACGCCAAAGATAAGAGGAAGAAGCGCGTCTGGCACAGCTTCCTCCAGAAGAACGGCTAGTGCGGCAAATCGAAATGCTTACCAATAGCCAGCAAGATCAAGAAAAAAGTAAATCTGTGCTGTATCAAGAGGTCATCGCGCAACAAAACAAACAGGCCGCACAAGCACTTAAAGCCTATTGGCAACGCATCGGACAATGGAACGTAAAACCAAGTAAGCAAAAACAATACGAAAAAGTACAAGCGATTCGGGCGTTGTTAGAAAGCTAACCCGTGTCGTCGACCTCCAATCGTGCAAAAATTGTGGAGGATCGACGACACTTCTTTTTCTCCTTCTTCCTTACAACCATCAATCATTACTATATATTGATCAAATTTTCTAAATGACGTATACTGATTTTAGCCATTTCAGAAAAACATTGATACATCAGCGTTTTTTAGGG # Right flank : CTATCCAAGCATAGTGTTAGTCGAATAGTAACGTTAAATTTAAAGCTTGAGGACAGATGTTCCCCAAGCTTTTTTGTGCGATTATGATGTGTTTCATTATGTTAATCAGTGTCTCCCATAATATAGGGTTATGATTTTATAGTGTTCTTGTTGTTTCTTGTTGTTGGATTATCCCAGATATCAACGTCAATTCGTGCTTCTATAGTTTGCTGCAGTGTTTCCCCCCTTTGAGCCTGCCAAGACACCGTGTCCTCTTTTCTTTTGGCATAACTGCGAATTTCATCGATTGTCGCGGGTTCATTAACTTCATCTTAATCGCTAATTTTTAATTAGTTATACTAGTGTAGTGTAAAGATCTAATCAAGACTTTTTTAGGTGTATTTTAGAGAAATTATTTGTAAAATAAAGATGAACGTCTCTTCCTAGCCATGCTTTTATTGCAGCCTTACAGACAACTGCTCAGGAGAAGATGGAAGAAGCGTTCTAACATTGGATAAAAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 8 3859797-3859958 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016622.1 Parageobacillus thermoglucosidasius strain Wild Type chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 3859797 30 100.0 36 .............................. ATATCCTGCATATTCTCCGCATACGTCAGAGTTAGA 3859863 30 100.0 36 .............................. ATTTCAACCTCAAGGCTTTCTCCGTTTGCCTGTTCA 3859929 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 98.9 36 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TAACAGGATATCTCGAATCCGCACAGCAATTTGAAGTGTCACATTTTTTTCCTGCAACCCATTTCCAATTGCTCCGGGATCTGCTCCGCCATGTCCTGGATCAATAAAGATTTTTACCATTTCTCCTCACCTCCATAAATAATTTATGTTTGTTCGCTGGACGTGCCTGTATAAAAAGCCTTGTGCATTTGAATCACCACCGTAAAAAAGAAAAAGCCACCTACCTAACAGGCAACTTATTTCCGTTCGTGGCATGCCCTCTCGCGAATAAATATAGGAAAGGGGATTTTTGCACATTCTTTCCTAAAACATTGCATTCCTAAATATAATAAATGCCGTCGACCTCCGATCATGCAGAAAACCCAAGGGATCGACGACAGTTCTTATTCCCTTTTTCCTTAGGAATCTTCATCATTCCCATATATTGACACAATTTTCTTAATAGCGTATACTTTATGTAACATTTCAGAAAAATGCTGATACATCAATATTTTTTTTGG # Right flank : CCGATTCACCCGATCAACAAGAGTTTTAGAACCAAAATCATTTGTATCTCCCTATAAGGAATTAACCCTCTCTGTCCGCTGCCTGACTGGCCTTTGAAGTTTTTGAACGAAATTTGCTAGTGATAAAAAAAATCGATAAAGCCGACAAGTTGTTTTATATTATGAAGGCAAAATGATAAACAAGGTTTCGCTCATGTTAGTTCACTTGTCTTATGGCTCTTGCCGGAATCAGCTGGCTGGGCAATTAGGAACCGGTGTTGCTGCGGCCTGGTTAGGAGCTAGTGTTGGCTGGTTACTTACGATAGTAAGGAGGATATAGATGTATAAAAGTGGCTTTAAAACATTCTGGGCAGAAAAGTCACCATTTTTGCTCGAGGAACTTTTCAGCAACTCACTTTTCTAATTATCTTTTCCCCTCTTTTCACAAGCATGTTTAAGGAAAAAGTTTTGCTTTTGCCATCTCTGTTTTATTTATTACAATCATTAATTTAGGTGTGGAG # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 9 3867469-3868560 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016622.1 Parageobacillus thermoglucosidasius strain Wild Type chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3867469 30 100.0 35 .............................. CTTCATCCAGCGTCAAGTCGTTCATTTCACTTGTC 3867534 30 100.0 35 .............................. TTGGGTGGCGCTGTCGCGCACTCCTTGACCCTCAA 3867599 30 100.0 37 .............................. TTTCACATTCCGGCGCTTTTGTTTCAAGAACAGCCTC 3867666 30 100.0 38 .............................. TCGACGGCCCCTGAATTAGATCAGCTTGGTGGTATCTC 3867734 30 100.0 35 .............................. TTCGAAGAAATGATTTCTTTGCTATTCCGGCTCTC 3867799 30 100.0 35 .............................. AGAATATCCATTGAGTAATTGCACTCGACCATGAT 3867864 30 100.0 37 .............................. CACTATTTTTTGTTATTTCGAGTTGAGCAGCTGTTGT 3867931 30 100.0 36 .............................. ATGAAAGCACCTTCTTTAGAACGCGACGCTCTCATC 3867997 30 100.0 37 .............................. GAAGTAATTAGTCAAGCAATTAGGTGGCAAGGCATGT 3868064 30 100.0 37 .............................. TCACGTTTCGAGATATGAGAAAAGAACACGGTCATTT 3868131 30 100.0 35 .............................. TGAAGCACCTTGGCGTGAAGAGAAAGTTAAAAAAG 3868196 30 100.0 36 .............................. TGACTTCTGCCAAAATCGCTCTATCCTCATTGGCTT 3868262 30 100.0 37 .............................. CAGGCGCAGCGAACGCCTTATAGGCACAGCGAACGCC 3868329 30 100.0 36 .............................. TCAAGCCGGCCGATTCGCATTCTTTTGGCGGACGAG 3868395 30 100.0 36 .............................. TAAACTCAGTAATGTCTGGCTGCCAATCTGCAAGCA 3868461 29 90.0 40 .....C...............-...A.... CTAAGAGATCGTTCTCTTCTCTTATCTCTTAGGTTTTTTC 3868530 30 76.7 0 ......GC...G.T...G.AA......... | C [3868541] ========== ====== ====== ====== ============================== ======================================== ================== 17 30 98.0 36 GTTTGTATCTTACCTATAAGGAATTGAAAC # Left flank : AACGGCCTGCCGAGCTTGACAGTGGTTTCCGTGGGAATCAAGCTGCCCGTCAATTGCTTCGAATGGAACGCGCAAAAAATTGATATCCCGCTTCATCGGCAATTTTATAATCAAATGAACCATGATCATAATCCCAATTTCCGCCAATGGTATAACCAAGCGGCTTTAACAATTGCTCCAATTGAAATAGAGGAAACGTTTTCCCTTCCAACTGTGATGGAATTTCGATCATCGCAAACAACCTCCTTTTTCACCTATGTTTCCCTATTCGCGCTCTTTATATGATTGTTATGGAATATTGCCTGCTACATAATGCCCCACACTGTCAATGTCGTCGACCTGGAATAGCGCAGAAAACCCAAGGGATCGACGACATTCCCTTTTGCTGCTTTTCCCAACTTCCATCAGCACCGCCGCATATTGACGAAATTTTCAAAACCAACTATATACTAAACATAGCTTGCTTTCGAAAAAAGCTGATATACCAACGCTTTTTTGGG # Right flank : CACTTACTCCGGCTGCCTTCCGATACGCAATTCAGTTTGTATCTTATTATGAGGAGCAAAACAGGTGTGCAGCTGCATTGTTGCTACCTTTGCTGCCACGGTTTATATTGCAAAACTTAAAACCTCGGTGAATCTTGTTTTTTATTGAGCAAGCCATTCTTATTGCATATTACCGTGGGTGTCAGCGAAAATTTGCTACGATAAGCGCGAAACACAGATGCCTGAGACAAAAACACAGCAAAATTACTTTTTTTACAAATAAGATAAAAATCCCTTCCCGCAGCGGAAGGGATTTTTTGATAAGCAACCGGTGGCAAGTAATGTCTTCGCATGCAAAAAACGGAGTGCATGATGCACTCCGAAAATCCGTTCTGTTATTTCAAGCGTTTTTCCAGTTCCGCTTTTTTCTCTTCGTATCCTGGTTTGCCAAGGAGGGCAAACATATTGACTTTATACGCTTCTACGCCTGGTTGGTCAAATGGATTTACCCCTAATAAGTA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //