Array 1 15806-9307 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIDQ01000044.1 Azohydromonas aeria strain CFCC 13393 Scaffold44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15805 29 100.0 32 ............................. CCAACCGGGGCCGCCGTGATGGCATGGATGAG 15744 29 100.0 32 ............................. CGCCTGAGCCGGATGATCCGCAACGGCGACTT 15683 29 100.0 32 ............................. TCCGGCGCGCGCCACATGAAGCTGCAGGAGGC 15622 29 100.0 32 ............................. TCCTGGACCTTCGTTTCTTCACCGACGCCGTG 15561 29 96.6 33 ............................A GCCGCAGGAATTCAGCCAGCGGTATGCCGATGT 15499 29 100.0 32 ............................. GCCCTTATGCCGTCCTTGCCCGCCGCGACAAT 15438 29 100.0 32 ............................. TCAACTGCGGCCTTGGGTTGCATGCCGGCAAA 15377 29 100.0 32 ............................. TGGCTTTGATCGTGACTGAGCGGCCCTTCGGG 15316 29 100.0 32 ............................. CCTCGCGCCGCGCTGGTGATGGCTTCGAGCTC 15255 29 100.0 32 ............................. TGCAGGCAGCGCGGCACAGGCGGCCGTGGATG 15194 29 100.0 32 ............................. GCTGCCCTGGCCGCCAAGGACAACGCTGACGT 15133 29 100.0 32 ............................. TTTGCGTAGGTGCTGGCGGTGGTGGGTTTGGC 15072 29 100.0 32 ............................. TACATCGCCAAGAACATCGACGACGCGGGCGC 15011 29 100.0 32 ............................. GTCAGCCATCACGCCTTCCCTCGCGGCTGCTT 14950 29 100.0 32 ............................. TCGCCCCAATCGGCGTCGCTGCCGTCAAGCTC 14889 29 100.0 32 ............................. TCCATCGCGTCGAATTTGGTTGCGTCGTCAAT 14828 29 100.0 32 ............................. TCGGTGCAGTGGGCGGAGGCACGGGGCTACGC 14767 29 100.0 32 ............................. AAGTTCCACGACGCGGAGGGTGCATGAGCGAA 14706 29 100.0 32 ............................. CCCATTCCGGCCCCCGCTTACAGACGGCCGAT 14645 29 100.0 32 ............................. CCGGTCAGCTTGCCGTCCTCGCCCTTGCAGAC 14584 29 100.0 32 ............................. CGATACCGGTGACACCGTAGCGATCGCCGCCG 14523 29 100.0 32 ............................. CCCATGTTGCGGATCACCTCGATCAGCATCAC 14462 29 100.0 32 ............................. AAATCGGCGGCCCGACAGGCACCAGGCCATTG 14401 29 100.0 32 ............................. GTCAGCGTCTGCGGCGGAGCGGCGTACTCGAA 14340 29 100.0 32 ............................. CCTTCCAGGCTCTTGATGCTGTCAGCGGTATG 14279 29 100.0 32 ............................. CGGTTGGGGAACAGCGCCGAGCCCAGGCTACT G [14255] 14217 29 100.0 32 ............................. TCCTTGATTTTGCTGTGATGCCGTAACTGGTG 14156 29 100.0 32 ............................. CCCGGCTGGCTCATGTTCGGCGGCAACTACGG 14095 29 100.0 32 ............................. GTCAGCACCCTCACCGGCCTCGCCCTCAACTG 14034 29 100.0 32 ............................. CTCAACGAGGCTCTCCAGGTCAACAGCGTTCG 13973 29 100.0 32 ............................. CACGACATCACCATCAGCGCCGAGGAGTTGGC 13912 29 100.0 32 ............................. AGATGCCCATGGACGCCGGCCAGCAATACACG 13851 29 100.0 32 ............................. TATGCGCGCAGATGAATCATTCCCAGGGAATA 13790 29 100.0 32 ............................. TCCATGCTGCGCGGCGAGTGGCAACTCAACGG 13729 29 100.0 32 ............................. GCGAAGCGGTGGACGGTGCGCTCGATGACCTG 13668 29 100.0 32 ............................. GCCTCGCCGTGGAAGAGCCGGCGCAGGCCGAG 13607 29 100.0 32 ............................. GCCGACCAGGACGAGGAAGCCCGCACGCTGGG 13546 29 96.6 32 ............................T TGGTTGATATACGCCTCATGTACTGTGGGTAA 13485 29 100.0 32 ............................. ACCGGGTGGATGAGTTCATAGGGAACCAGCAT 13424 29 100.0 32 ............................. ACGTGGCCATGGACGAAGACATCTACTCGTAC 13363 29 100.0 32 ............................. TCGGTGACCCAAGGGCCGTCGTCCTTTGACTT 13302 29 100.0 32 ............................. AAGCCATCAGGCCCCACGGGCTGGCCCATCGA 13241 29 100.0 32 ............................. CGGCCAGGAAAACTCGACTCGAAGGGGTCAGG 13180 29 100.0 32 ............................. TGCCCGACCGGCCCGGGCGCCCCGACTTACGA 13119 29 100.0 32 ............................. GGCGTCGCCACGGCCAGCATCACCATCGGCGC 13058 29 100.0 32 ............................. GCGCTGCAGAGCCCAATCAGCTTCACCAAGGT 12997 29 100.0 32 ............................. TCCGAGCTGGACATCAGCGAGGCCATGCGGTT 12936 29 100.0 32 ............................. CCACGTCGAAGAACTCGGCCATGAACTGCGAG 12875 29 100.0 32 ............................. GCCGACAACATGCTGACCCAGATGCCCGTCAT 12814 29 100.0 32 ............................. GGTTCGCAGCCAGGACTGAGCCCACCGATTGG 12753 29 100.0 32 ............................. CCGCGAATGCAGCCGGCGTGATCTTTCATGCG 12692 29 100.0 32 ............................. GATGGCGCGGGTCTGCTCGCGTCGCTGAAATC 12631 29 100.0 32 ............................. CCCATGGGCACACGGGCGTTGGGCGGTGTGAG 12570 29 100.0 32 ............................. CGCACGCTGCCGTCGTCGGAGCCGCGCTCCTT 12509 29 100.0 32 ............................. ACGGGCTCACCGCTGATCGATGCTGGCGTGGC 12448 29 100.0 32 ............................. CTCACAGCACGTCCACCGCCATGTTGAGGAAC 12387 29 100.0 32 ............................. CAGCGCAGCATGTTCTGAGGAAACCGACCATG 12326 29 100.0 32 ............................. CCGCAGGAGTTCAGCTACAGGTATGCCGACGG 12265 29 100.0 32 ............................. CCGGACATCTTCGCGGCCACCTACGAGGCGGC 12204 29 96.6 32 ............................A GTCCACCATCTGCGCGGCCGCGCTGTCGCTGA 12143 29 100.0 32 ............................. CGCGTGCCGGACGCCGAATTGAACCTGTTCGC 12082 29 100.0 32 ............................. TTGCGCCACACGCGCTGCTGGTCCTGGCGGTC 12021 29 100.0 32 ............................. GTGTTGGCTTGTGGCATGGCGTCGTCGTCTCA 11960 29 96.6 32 ............................C AGTGGCACTGCGCCGAGCACATGCCGATGACG 11899 29 100.0 32 ............................. GCCTGGAGCGAGGCGCGCGCCGCGGCCGATGC 11838 29 100.0 32 ............................. CCCGCAAACACGGCGATTGCCACGAGTGGCGT 11777 29 100.0 32 ............................. CCCGCTCGCGGCGGGCTCTGTTTGCGGTGTGC 11716 29 100.0 32 ............................. CATTTCCTGTAGCAGTCGCGTGACTAGAGCGC 11655 29 100.0 32 ............................. GACTTCTCCAGCGCCATGGAGCTCACGCCCTG 11594 29 100.0 32 ............................. GGACTATGAGCAACATCAATTGGAACGAGGAC 11533 29 100.0 32 ............................. GGAGCGCCGCCGCACCCATCAGTTCGGTGAAG 11472 29 100.0 32 ............................. CCGTTCGCATCGCACCACGCTTCAAACGCGGC 11411 29 100.0 32 ............................. CTCCCGGCTTCCCCGAGCACCGCGATAACACG 11350 29 100.0 32 ............................. CCACCGTGGCCTGCGGCCTCGGGTGGCTGGCG 11289 29 100.0 32 ............................. GACCAAGGATGACCCCCGAAGAATGGCAGCGC 11228 29 100.0 32 ............................. CCTTGGCCGCCAGCGTGCGCAGCGTGGCGCCG 11167 29 96.6 32 ...........................A. CCTGCGGGCTGGTGGATGCCGGAGAGTTTGAG 11106 29 96.6 32 ........T.................... GTGGAGATTTCGGCAGACCCCGAACTCCTGAG 11045 29 100.0 32 ............................. GCCCTGCTGGGGCACGCCAGCGACAGCGCCGC 10984 29 100.0 32 ............................. TAGGACAGCTGCTGCTGCGGGTTGGTGGCCCA 10923 29 100.0 32 ............................. GCCAGCTTCAGTGCTGCCCGCGACGCGGCCAG 10862 29 100.0 32 ............................. GGCTACTGACCACCATGGCCGACCACGCCAAA 10801 29 100.0 32 ............................. GCCCCGCTCACCGCTGCCCCTCCTGCGCCGCG 10740 29 100.0 33 ............................. CACCTCGTCAGGCAACTCGTAGAGTCGGGCCTC 10678 29 100.0 32 ............................. GCCGGACGGATACAGCGCATCCGCCAAGAGCG 10617 29 100.0 32 ............................. GTCACGCGGGCCGACCCGCTGGCCTCGCAGAT 10556 29 100.0 32 ............................. CCCTCGGTCTTGCGCGCGATCTCCAGCAGCGC 10495 29 100.0 32 ............................. TGCTGGTCGTGTCGCTGCACCAGAGTGGCGGC 10434 29 100.0 32 ............................. CGGACCTGGCGCTCGCCGCCCTCGCCGCCGCC 10373 29 100.0 32 ............................. CCCTGAGCATCGCCAGCCCCGCGAGCCGGCCC 10312 29 100.0 33 ............................. GAGTTCCTGGCGCAGACGCTGAACCCCGTGGAC 10250 29 96.6 32 ...........................A. TACACCGTGTTGTCGGCGTACGCGGCCAGGAT 10189 29 100.0 32 ............................. TCGGCCGAGAGCAACGCCGGCACCTACGACGC 10128 29 100.0 32 ............................. ACATGCCGAACACGATCCTTACCCATCAGATG 10067 29 100.0 32 ............................. ACGATGCTGGTGATCGACGAGGCCGGCGTGAT 10006 29 100.0 32 ............................. CAACTGTTCCACGCCGGCAAGCAGATCGAAAA 9945 29 100.0 32 ............................. GCGGTGGAGGCTGTCACGCAGGGCATCAAGAG 9884 29 96.6 32 ..................A.......... AGCTGACACGTCTTGAAGCCCGCCGCACGGAG 9823 29 96.6 32 ...C......................... TCGGCCTTGTCCTCGTCCGAAGCCAGGCGGCC 9762 29 96.6 32 T............................ GGGCACCAGGGGCTCGTGATTCGCGGCGAGAT 9701 29 100.0 32 ............................. GCCAGCAGCACCTGCTGGTCCGTGATGTCCTT 9640 29 100.0 31 ............................. AGCTCAACCCGTTCTGAGCAGCGCCAGCCCT 9580 29 100.0 32 ............................. GCTTCAGGTATCTGCGTTTTGAGCACGCACGA 9519 29 100.0 32 ............................. GCGCTGGCGGTCTTGCACTCCAGCACGCCGGC 9458 29 100.0 32 ............................. TAGCGGGCCAGGTCGAAGGCGCCGGCCTCGAT 9397 29 100.0 32 ............................. GTGGATACGCAGCAGTATTCGGACGGCCAGTG 9336 29 96.6 0 ..........................T.. | A [9309] ========== ====== ====== ====== ============================= ================================= ================== 107 29 99.7 32 GTATTTCCCGCACGAGCGGGGATGAACCG # Left flank : AGCTGCTGGAGCGCATCATTCCGGACATCGAGACCATGCTCGCGGCCGGTGAGATCGCGCCGCCGCCGCCCGCCGCCGACGCCGTGGGGCCGGCCTTTCCTGACGCGAATGGTCTGGGGGATGCTGGTCATCGTGGTTGAGAATGCCCCGCCGCGGCTGCGCGGGCGGCTGGCGGTGTGGCTGCTGGAAGTACGTGCGGGGGTGTATGTCGGCAACTATGGCCGTCGCGTGCGCGAACACATCTGGAGCCAGGTGGAGGAAGGGCTAGAGGACGGCAACGCCGTGATGGTGTGGCGCAGTCCGGCTGAAGCCGGTTTCGAGTTCCGCACGCTGGGCAACAACCGACGCATGCCGGTGGATTTCGACGGCGTGCAGTTGGTCAGCTTCCAACCCGACGCCGCCGGCGACGCTCCTTAACAACTTGCTCAAAATCAAGCTCACTGATCGGTGGCCTGGGAGGGTGCCGAAAAAGTGAATAAAATCAAAGGGTTGGAGGAAGA # Right flank : AAGGGACTTCCCCAGTCCTTGGTCGGTGTCGAGGCACCAAGATTGACAGGCGGAACGTCAATCTGAATCTGGAAAGGGGAAGCCCATGACAGAGGTTACACGAGCAGCAATCGCCCGGGTAGGCGTGGATTTGGCCAAGCGGGTCTACCAGGTGCATGCGGTAGATCGCTACGGTCGTGTGGTGCTGGTCAAAGCGTTCTCGGTGGAGCGCTTCTACGCGTGGTGCAGCACGTTGCCAGCGGGTTGCATGGTGGCGATGGAGGCCTGTGGCGGTGCGCACCATGTAGCGCGCCGGCTCCAAACCATGGGGCTTGATGCACGACTGATCGCCGGCCATTTCGTGACGCCGTACCGCATGGCAGGCAAGAGCGGTAAAAACGACGCCAACGATGCGGCAGCAATTTGTGAGGCTGCTGGGCGGCCGCAAATGCGATTCGTGCCGATCAAGACTGCTGAACAGCAAGGGCAGGTCACGATCCATCGTTTGCGTGAAGGCTATA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCACGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 11935-12137 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIDQ01000015.1 Azohydromonas aeria strain CFCC 13393 Scaffold15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ======================================== ================== 11935 41 100.0 40 ......................................... AGATGCAACTGCGCGGAGATGCCCGAGTGAGGCCTCATCA 12016 41 95.1 40 ............C................G........... CGACACGCCGCCCGGAAGCTGGACGACCGGAACAACGCCC 12097 41 95.1 0 ................................A..A..... | ========== ====== ====== ====== ========================================= ======================================== ================== 3 41 96.7 40 CCAGCCCGTTCGTCCTGAGGTATCGAAGGATGGACGGGCTC # Left flank : TGAGCAGATCGTCGGCGCGCAGGCGGTGGTCGGCGCGCGTCGATTCGAGCAGCGTGATGGTCTTGGCGATGGCGCGGCGCTGCGCGGGGCCGGGGGCGCCGAGGATGGCGCCGGCCAGGGCTTGGTCGGACAGCGCTCCGGATGAACGGCCTGGCGCCACCGTATCGGCCCGCTCACCCTTCGATACCTCAGGGCGAACGGGAAGGGGCGTGTCGGCATGGGGACGAATGCCCGCGGAGTCATCGGCCCGCTCACCCTTCGATACCTCAGGGCGAACGGGAAGGGGCGTGTCGGCATGGGGACGAATGCCCGCGGAGTCACCAGCCCGCTCACCCTTCGATACCTCAGGGCGAACGGGAAGGGGCATGTCGGCATGAGGACGAATGCCCGCGGAGTCATCGGCCCGCTCACCCTTCGATACCTCAGGGCGAACGGGAAAAGGGGTGGTGGTCTGGCTGAGTTCGGACGCGGGCTCGCCAGCCCCATCTACCGGGCCATTA # Right flank : CTGGCATGTCGGCTTGAAGTCGTTCAGGCATTGGATTCCTCGTGCCCCAGGCGTGGCGTTCGATGGCGCCCCAGTCGTCCCGGATCAGTGCTTCTTTCTTGGCTCGTGCCCAGCCCTTGATTTGCCGCTCCGCCGTCAGGGCTTCGTCTCGCGTGGCGGCTTCCTGCGCCCACACCAGCAGCACCGGCCGCCTGTCGTGCGTGTAGCCCGGTATCTCGCCCGCCTCATGTTGAGCCACGCGACGCTCCAGCTCGTCGGTATGCCCAACGTAATAGGAGTCATCCGCGCAGCGCAGCATGTAGACGAAGAACGGCTTCATGGAAGGGCGGCGTCCTGCTTTGCCGGCCCGTTCCCCCTTCGAGACCGCAGGGCGAACGGGAACTGCTGCAGCTCAGCTGTTATGGAGTGCGTCAACGCTCAGCGCTGCGCCGCCTTGATCTGCTCCAGCACGTCCTTGGCGCTGGCCGGGATCGGCGTGCCCGGGCCGTACACGCCCTTGA # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCCGTTCGTCCTGAGGTATCGAAGGATGGACGGGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.70,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //