Array 1 1723037-1725903 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028149.1 Clostridium perfringens strain JXJA17 isolate Intestine chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1723037 36 86.1 29 A...C.TA..A......................... CAGCTGAAGAAAAAGAAGCCATAAGGCTT A,A [1723039,1723049] 1723104 36 100.0 30 .................................... TAGTTGAAGTTCTTATACCATCTACAACAT 1723170 36 100.0 30 .................................... TAGTGAATACGAGGTATCATACCCAAGCTA 1723236 36 100.0 30 .................................... TCTAAGTTGTTGAACCCGTTAAGTTCTCTG 1723302 36 100.0 30 .................................... GAAAAAATGAAAGAGGGCTTATATAAAATA 1723368 36 100.0 30 .................................... CAACATAGTTGGTAAATCTAACTCAGTTAT 1723434 36 100.0 30 .................................... TCAATGGGCTAAGGATGAATACGAAGAATA 1723500 36 100.0 30 .................................... TCTCTATTCTTTTTTAAGTAAAGATTGCTT 1723566 36 100.0 30 .................................... ACATCAAGTGGTGTATCCTCAAATCCACCT 1723632 36 100.0 29 .................................... ATATATACCAAGCATTGATGCATGTTGGT 1723697 36 100.0 30 .................................... TATGAATTATCACTTGGAAACAATCCTATT 1723763 36 100.0 30 .................................... TTACTCTTAGTCGCTGATCGTTCATTCACC 1723829 36 100.0 31 .................................... AGTTTACACATAATACTTACAACTAATCCAG 1723896 36 100.0 30 .................................... GACCTTTCTAAAGGTTTTATAACAGTTAAC 1723962 36 100.0 30 .................................... TGATGACGATGTATATGCTTATCCAGATAC 1724028 36 100.0 30 .................................... TGGTATGAGTAGAAGTGATTTACTATTACA 1724094 36 100.0 30 .................................... TAATTTTGATATTGATTCATTATCAGAAAA 1724160 36 100.0 30 .................................... CTATTGCTAAAGCTATTGCAGAAGGTTTAT 1724226 36 100.0 29 .................................... GGAAAAATAAAAGCCCCCTAGTAAAATAA 1724291 36 100.0 30 .................................... TTAGGAGGTTTTTTATATGGAAAACAATTT 1724357 36 100.0 30 .................................... TTACCATTTCCGTTATGAACTGAACTCCTT 1724423 36 100.0 30 .................................... TCAGCGAACAACTTCAAGGGAATATAATTA 1724489 36 100.0 30 .................................... CACCAAAGGTATATTGAGAGAAAGATAAGG 1724555 36 100.0 30 .................................... CTTGGGGGTGGATTAAAAGCTCAAGATGCT 1724621 36 100.0 30 .................................... GATTTATTAATTCTAGGCACACAATAGAAA 1724687 36 100.0 30 .................................... TGCTGCACTAAATATTACCCCTCCAAGTCC 1724753 36 100.0 29 .................................... AAAATGAAAGTATAAATTTAAATATTTAT 1724818 36 100.0 30 .................................... TATGAATTATCACTTGGAAACAATCCTATT 1724884 36 100.0 30 .................................... ATTTATTCTGATTAAACCCATCAAGGAATT 1724950 36 100.0 29 .................................... GAAATGGGTTCTTTGTGTACTAAAATAAG 1725015 36 100.0 30 .................................... CAACTTTAGACAAGGGCAAGTCATAAGCTT 1725081 36 100.0 30 .................................... TCATGCAAAGATGAAAAGACAATAATTAGT 1725147 36 100.0 30 .................................... TATCTATTAATGTTTGATAATTTAAAACTT 1725213 36 100.0 29 .................................... TGCTTATAAGACAAGAAAGAAGAAAAGTA 1725278 36 100.0 29 .................................... TGATGGTAAGTGGCAAAATATAAAAGATG 1725343 36 100.0 30 .................................... TATGGAATGAATCCTAATTTCAATCCTAAC 1725409 36 100.0 29 .................................... CTTCTAAAGCTCCTAAATTACTGTTAGCC 1725474 36 100.0 30 .................................... CTTATCAAATGATTATCATATGAGAATACA 1725540 36 100.0 30 .................................... CTCCAGTTTATTATTAATACCTCACCCCTT 1725606 36 100.0 29 .................................... TTTAAAGCATCACTCCAACGCCCTTTTAT 1725671 36 100.0 29 .................................... TAAGGGCGTGTGGCTGTTGTCTAAAATCC 1725736 36 100.0 30 .................................... TGGTAGTGTTGATTATATAAATGTTGTGGA 1725802 36 100.0 30 .................................... ATAAGGGCGTGTGGCTGTTGTCTAAAATCC 1725868 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 44 36 99.7 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTTTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGGTTATTAACTTTCAATTCTCTCATAATAACAGTAGCCCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTCTCATTTAACTTAATAAGCTCAACACCATCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTCTCATCATACCAAAAAACAATATGACGTACTTTTCCATCACTTAATGGCTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : TAGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAGTACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTCTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGTTTTATCTCTGGCAATTTTAATAATCTAAAATCTTTTTTACTACAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAACAGAATGATTTTTTCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [96.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //