Array 1 38910-39303 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQGT01000012.1 Leptospira alexanderi strain 56159 Contig012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38910 29 100.0 32 ............................. ACCAAATCGGAAAAATGGGAGCACTAAAGACG 38971 29 100.0 31 ............................. TTTTTATTGGTGTGATGAAGATGGGCGCTTG 39031 29 100.0 32 ............................. GGCACGCGCGCCAGGAAAGCCAGGAGTATCCG 39092 29 100.0 32 ............................. TAGGGCGGCCTAGGTAGTGGCGGCCGGTTAGT 39153 29 86.2 32 .......................A..TGA AAGTCCAACCGAAGACTTTCCTGCGGCCTCAC 39214 29 100.0 32 ............................. AAATTAGTTGACAGAGTTAAAGAGGGTCTTTC 39275 29 86.2 0 ............TG............TG. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : TCGTATGAAAACGGCGCATTTTATTCTATGTGCGACTTTCATTTCTGCTCAATGAACCTGACTCAGAAATTGCGATCGTCACACAAGTTTAAAATTTATAGATCGAAGGATAAACCTATCGTTGTTTTTTTACAACATTCAATTCATATAATTCCGATATACATAATATTATGATAAACAATTTCTCTCTTTCTAAACAAGTTTGTTCCCAACTCTTTCAAAATGATCGGCCCTCTTTCTTTGGATCCGAAATTCGTTTTCATGACGATTTGTTTCGCGAGATAATAGATTTTGAAGGTTTATCTTTTATGCCCAAGCTAAGTCCAAATCGAAATCAGAAAGAACTTTAAATGATTCCGGTCTTTCAAGGTTTCTTGAAGAGGACAGTTTTTCTTTTACAAACCTAATCGATTTTGTGAACAAAACACAAGATCAGATCATACCTTTAAAAATAAACTCTAAGCTGACATAATATGTAAAATACTATACGAACTTTTAGA # Right flank : AAAACAGAATGGATTTTGATTTAAAACCCTAACCACTGATTCCTAACCACTAACATCTTGAAACACATGCGTGGGGTTGAATGGAAAACAGAATGGATTTTGATTTAAAACCCTAACCACTAATTCCTAACCACTAACATCTTGAAACACATGCGTGGGGTTGAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41283-42803 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQGT01000117.1 Leptospira alexanderi strain 56159 Contig117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================== ================== 41283 29 100.0 32 ............................. CAGAATCATGATTGCATTTGGGTTTTTTATTC 41344 29 96.6 31 ............................C CTACTCCCAACCCTTCAAAAGATGAAACAAA 41404 29 96.6 31 ............................T TGCAAAGGTTGTTGTCTATCCGGATCTTTCC 41464 29 96.6 31 ............................A AGCTCTCTCATTTACCGCTAATCCTAAAACG 41524 29 96.6 32 ............................A AAGGGTTTTCATAATTCTTGCTTCCGTTACCG 41585 29 96.6 33 ............................A GACATTGTCCACAATCTTCTTTAGAACGGCAAA 41647 29 96.6 32 ............................A TCACGTCTATTACTACAACGAATAGAACCGAC 41708 29 96.6 32 ............................A GACCGCTGCTTTAGACCACTCAGCCACTTCTC 41769 29 100.0 32 ............................. AAAATTTTTGAATCAATGCTTTCAAATGGCCA 41830 29 100.0 32 ............................. ACAAGCGCTTGGCCAAGTCCAGTCGCCGTGCA 41891 29 96.6 31 ............................T TTCTTTTTTAGGAATTTACTGCGAAAATCCG 41951 29 100.0 32 ............................. GTTGCCACAGGCTCGAAGTAAAAAAAAGAGAT 42012 29 100.0 31 ............................. CCCGCAAAACTAATTTCAGCGCAGTTTTAGA 42072 29 100.0 31 ............................. GAGAATAACTGGATGAATGAAATAGAATCGA 42132 29 100.0 39 ............................. AAAGAAGATTTTACGAGTGATCAAACGAACCCAATGGGA 42200 29 100.0 32 ............................. CGCCTTGGGACATTTTTCTTTTCGGCTCTTTA 42261 29 100.0 33 ............................. AAAATCTTGAATAGAATCTGTTGAAAATGTTCC 42323 29 100.0 32 ............................. TGACCGAATGTTTCCGTCCATAGGATCGGATG 42384 29 100.0 32 ............................. CGAACACGATCCTGGATGACCTTGTTGAGATT 42445 29 100.0 32 ............................. GAATTTCTTTTTCTGCCGGAGTTTTCTCAGGT 42506 29 100.0 32 ............................. TTGAGGAGAGGCTAGTAACGGCTTGAGAGAAT 42567 29 96.6 34 ............................A GGATTAGAAGCTGTATTTCGGGAAACTTTTCCCA 42630 29 100.0 32 ............................. TTTTCTTGGATTTGTGACGCTTGCGTAATGAT 42691 29 93.1 56 ..........................TG. AAAACAGAATGGATTTTGACTTAAAACCCTAACCACTAATTCCTAATAACTAACAT 42776 28 75.9 0 ...GAAA..-................TG. | ========== ====== ====== ====== ============================= ======================================================== ================== 25 29 97.5 33 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : TCTCGTTTGCTCCAATCTATTTATGACCTTCGCTTGGTATGGTCATTTGAAGTTTTTTCACGGATGGAATCTTCCTTTAACAATTTTACTCAGCTGGGGAATCGCACTTTTCGAATATGTCTTGATGGTTCCCGCCAATCGAATCGGCTACGGAGAGGAAGGTTACAGCGCCTTTCAACTTAAAATCCTACAAGAGATCATCACTATCTCCATTTTCATCTTATTTGCTTCCTTGATTTTAAAGGAAAAGATCAGATGGAATCATGTGGTGAGTTTCTTTTTAATTTTAGCGGCGGTTGGGTTTGCGTTCTACGATAAAACTCCCGCAGAAATATAATTCAGCGATTCACTAATTGGTTTTCTTTCAAAGTATGTCAAATTGAAAAAGGCTTGATCTCGGAATTCAGTCCGCCGATATCATCGGCAAGTTCTGCAAAATACAACCAATTGGGCAATTTTATCTTGTCGAAATTACAGAAACTACTAAACTAATCTTTAGC # Right flank : AAAACAGGATAGATTTTGACTTAAAACCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1763-2707 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQGT01000154.1 Leptospira alexanderi strain 56159 Contig154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1763 29 100.0 32 ............................. AAAGGTATTACTCATACCATCCCCGTTTGGAG 1824 29 100.0 32 ............................. GGAAGTCGAACCAATTCACAACCTGTTTGATA 1885 29 100.0 32 ............................. TGCTGCCACAATTCTGTATACGGGTTCTCCCG 1946 29 96.6 33 ............................A GGAAACATTTCGGAAGAATATGATAGAATCGGA 2008 29 96.6 31 ............................A AAGCCGAGATCGGATTCTAACGATCCCCGAT 2068 29 100.0 32 ............................. GGCTACTATTTCCAAACGTAAACTAATCATTA 2129 29 100.0 32 ............................. ACGATTCACCAACTGACTGCAATCCATCTATC 2190 29 100.0 32 ............................. ATCACAGAACTTCCATAGCGTCATTCCGTTGA 2251 29 100.0 32 ............................. TGCTGCCACAATTCTGTATACGGGTTCTCCCG 2312 29 100.0 32 ............................. GCGACGTCAATCGCTTCGGAAAGAGAATAGTT 2373 29 100.0 32 ............................. AAGAGATTTTAAAAAGTCCGTTTCTCAATGTT 2434 29 100.0 32 ............................. GCCGACCAGGAGAAGTTGGAACTTGAATGGGA 2495 29 100.0 31 ............................. CCAGGAACTAAGCGGCCTTCCACAAGCCACA 2555 29 100.0 33 ............................. AATTTCCGGATCGCCAAAGTTCTTCAAGATTCC 2617 29 96.6 33 ............................A GGTGGATCACCTTCTTTTCCGCCCGTTCCTGGC 2679 29 93.1 0 ..........................TG. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.9 32 CTATTCTCCACATGCGTGGGGTTGAACCG # Left flank : TAAATTACTTAAGAGGATTATTCCGGATATCAAGGAGCTGATTTATGGTGGTTTTGATTTTGGAGAGGGTGAAGACCTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAACCGGGCGTTTTTGTCGCTTCCATTAACGCGAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGGATGCGATCATGTTGTATTCGAGCAACACGGAACAGGGTTACGGTATCCGTTCTCACGGCGATCCTTCTCGCGAGATTATGGACTTTGACGGTTTACTTCTAATGTCCAAACCCGATTCGAAACGCGATCAGAAAGAAGTTATGAGTATTTCCGATTTTTCTATGGTCACCGAAGATTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCAGACTCCCTTCTTTTAGAAGCAGATGATCCCTAATGAATCGAATGAACAGACATAATTCTTAAGATTCCTATACAAACTTTTAGC # Right flank : AAAACAGAATGGATTTTGATTTAAAACCCTAACCACTAATTCCTAACCACTAACATCTTGAAACACATGCGTGGGGTTGAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCTCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //