Array 1 152443-152776 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV831978.1 Rothia sp. HMSC065C03 Scaffold36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 152443 28 82.1 33 .TA..........G.......A.....C CTGAATCAGTCCCGTACGCAGTGCGTAGGCGTT 152504 28 92.9 33 .TT......................... CCGTCCTCACCCTTGGATCCCTGAAGGGCGGCG 152565 28 100.0 33 ............................ CAGCCCGGAACTTCTGCACAGTGCCCCTGCAAC 152626 28 100.0 33 ............................ CGGCCGCCTGGGCAGGTACCTGCTGGTGACCCA 152687 27 85.7 33 .............GT..-.........C CAGCTAGAAATGCTCTGGATGCTGGAGCGTGCG C [152692] 152748 28 92.9 0 .............G.......A...... | C [152774] ========== ====== ====== ====== ============================ ================================= ================== 6 28 92.3 33 GCGTTCCCCGTATACGCGGGGGTGAGCT # Left flank : CGGGCTCAACCGGTCTATCCTGGATGCCGCTTTTGGTACGCTGCGCCGCCAGCTGGAATACAAGGCCAGCTGGTACGGCTCACAGGTACAAATTATTGACCGCTTCTTTGCATCCTCTCAGACGTGTAGCGCCTGCGGAGCACGAGCGAAAACCAAGCTCGGACTCCACGTGCGTGTCTTTGAGTGCGCGGCCTGCGGTGTGCGGATTGATCGTGACGTGAACGCGGCACGTAATATCCGTGCGGAGGCCGTGCGGATGCATGAGACGCAACTCGCCCCCGGCACGGGGGAGAGTCTAAATGGACGCGGAGTTGCTGACTCTGATGCCGCTGTTTCGGTGGTGTTGGGGGATGCGGCGTTGGATGCGTCAAGGCCAGCCGCCACGGGCGGCGGGTCACCGTAGACGAGTAATCGTCTACTCATCCCTTTTATATATGTGTATACGTGTGGAAACTGAATATTTTTAGGCTTTTCTCGGGTATTGCGACTTGCGGCTGAGT # Right flank : TCAGGCACACCCATTCCGTGAAGGTAACGGTCAGTGTTCCCTGCGTGAGCGGGGATAAATAGAGGGGTGCCGGGCTGCGCGCTCTTTATTCTGCATGCTTGCAGAAAGGAACTGGCGTGTGCCCAATTGCCTGTCCTCCAGGTAGGTTCTATGCCCCCACCAACCCCGCGCCTCCTGCCCCCGATAATGCCCTGATACCGCCCGCGATAAAAACCCCCGTTAAAAACACAGCCGGGGCCGTCTCGCACGCAGGCTCGAAAAGTGCGAGAATGGAGCAGAAAAGAAAACTACGAAAGAAGATACTTTCATGCTTATTCTCGTTGTGAACGCCGGTTCTTCCTCCCTGAAGTACCAGGTGCGTGACACCTCCCTGCCCGAGGCAGAGCAGATGCTGACCTCCGGCCTCGTCGAAAACATCGGCACCGACGTGCCCAACCACGAAGTCGCATTCGACATCATGTCCGAGAAGCTCGAGCCCGTCCTGGCAGGCCGTGAGCTGC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGTATACGCGGGGGTGAGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCATGCGCGGGGGTGAGCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10962-11295 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV831973.1 Rothia sp. HMSC065C03 Scaffold22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10962 29 100.0 32 ............................. CCGGTAATCTCCTTGTGCGAGAGATTCACGTC 11023 29 100.0 32 ............................. GAAGCAGCGGTTAAGGCAGCCAAGCGCGTTGC 11084 29 100.0 32 ............................. TACGAGTAAGGGGGCGAGGTGCCATCCGGGTA 11145 29 96.6 32 .............A............... GTCTCTGCGTTCCATATGAGGCACGAAGAACC 11206 29 93.1 32 ............TC............... CCCTGAGTGCCAGTTGACTGGCCATCAAAATA 11267 29 82.8 0 ............TC.........A.AA.. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : GTAGACCCCGGACAGATAGGCTGTCAACCAGCGGATTTCGTTCGTTTTCATCGTCGTCGTCATCAGACGCAGTGCGAGTTTTCCACAGCCCTCGCGCACGAACGCGCGTCTGACGACGATAGGAGTCTTATAGGTATATCTTATAGGGGGAAAAATTTGAACACCGATTTTCCCTTGTGATTCCGGGGATTCTTAGGTGTTTTCGCTATAGGTAGCGTACACAACTCATCCCAGAGGTGTACACAATTCATCCCAGAGGTGTACACAATTCATCCCACTAACGTTCACAGTTGATCCCAGGAGCGTACACAAACCATCCCACCTCCAAGGGTGTACGCCCCGCCCTAAAAATAAGTTATCAACATGATGTACATCACATAAAAATACTTCCTGGCCACGCAAAAATACCCCCTTATCTTGTCAGGGGTACCCTTTAGGGTATACGTGTGGAACCTGAATATTTTTGGCCTTTGGCGGGATTTCATACCTGGTCAGCTAGT # Right flank : GGAGTGCACCCCCCCATAGGGGGGTGCACTCCGTTAGCTGTTTAACCGCAGGACAACCCTGCCCCCCTTACCCGGAGGATACCCCCTTAGCGGCCGCCCAACAGCGACATAAAGCGGCCCAAATGATTCTCCAACCGCTGCTTCACACGCTTAGTCTTAGACACCGCGCCCTCACCATCAGACGTGCCACCAAAAAGCGGCATCTTCACCTTGATGAGAGAGGTGAGCTTTCCGGAAATCGTACGGCGTCCTTCCCTCAGCGCACGATTAACCACGCGCTGAGTCTCCTCAGGATCCAGGTTTTCATCCCGCACAATGACGTTTTCTTCCTCGACGCGGCGTTCAGTCACGTACCGGTGGAAGCGCTCGTACACGTCTCCGGGGTTCGGGGTGTTCCTATACTCCTTAGAGAAATCCGTGATGATGTCGGCACTAGCGCGTAGTTCGCTACTACTGTTGACCGCACGTTCGATGTCTTCGGTGGCGTCGCCGTTAGAGTC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //