Array 1 33-480 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHP01000036.1 Moraxella catarrhalis strain F24 B747ctg12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33 28 96.4 32 .............C.............. GTATTTAATTTCTACAACTGCGCCTGATAATT 93 28 96.4 32 .............C.............. AACTCGGCAGCAATACCGCCAAGACATGTAGG 153 28 100.0 32 ............................ AGCCTGAGCTTGTCGCTGATGTGCTTAATCAC 213 28 100.0 32 ............................ GACGCAAAGATTGCAATCAGATAAAACAAAAA 273 28 89.3 32 ...........TGC.............. TAATCTTGAACCTATTTCATAAATAAACGGCT 333 28 96.4 33 .............C.............. AACTGTGTTAATCCGCTCAGACAAGCTTTGATT 394 28 100.0 31 ............................ CTTACAATTTTTTTGTCAAAATGCTGCATAA 453 28 96.4 0 ..................T......... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 96.9 32 CTTCACGACCGCATAGGTCGCTTAGAAA # Left flank : TTGTGGGTTAATGTCAGATTTTCCCTTGAGTTC # Right flank : ATTTCGTTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAGCAAACCACCGAACAAACCACCATGGAAGAGATTACGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCACAGCCAAATCCAAGCACTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTCCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCATAGGTCGCTTAGAAA # Alternate repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 30-673 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHP01000035.1 Moraxella catarrhalis strain F24 B747ctg39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 30 28 100.0 32 ............................ AGCGATTGAAAGTAATATTAATAGCTTTAATA 90 28 100.0 48 ............................ ACAATCAACGCCTAGCATTGGTTGATGAGTTTACCAAATTGGTTGCAA 166 28 96.4 32 .............T.............. TTTGGTGATTACAAGCTACCGTCCGAATTTCG 226 28 100.0 31 ............................ CTAATTCATGCCAAATAATACCCCCTGTACG 285 28 100.0 32 ............................ AATCTTGAACGAACGCTAACAACAAACAATCA 345 28 100.0 32 ............................ GCTCAACACTTGTCGCCTGTCTGCTTTGGGTT 405 28 100.0 32 ............................ ACAGTTCATTATTACCACCTGTGCCGACATTC 465 28 100.0 33 ............................ TCCTTCAAAAATAGCGAAAATAAGCGTTTTAGC 526 28 100.0 32 ............................ AGCTAAAGGCGGCGCAAAAAAGTCAAACACCG 586 28 100.0 32 ............................ ATAGCAGTATATCCGAATCAATAACAGTATAT 646 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================ ================== 11 28 99.7 34 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TCAAGCCGGTGGTGTTGATTTAGTGAGCAC # Right flank : AGTAAATCAAGAAAAGTAGTCGAGAAAATAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32182-32509 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHP01000039.1 Moraxella catarrhalis strain F24 B747ctg17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32182 28 100.0 32 ............................ GCCATGCTTGTTTACCACCACATCAAGCGGTA 32242 28 100.0 32 ............................ TTCAGTTCTTTCACTTGATAATGAACCTGCTT 32302 28 96.4 32 .............T.............. CCCATCTGACGACTGCGTTTCATGTATTGCAT 32362 28 100.0 32 ............................ GCTAAACAACACAATATTGACAACATGTCAAA 32422 28 96.4 32 .............T.............. TATAAAGAACATATCTTATCAATTCCCCGTGA 32482 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.8 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TCGCATTGCGGCTTGGGTGATGGATGTCCCTGTGCCAAGCAAGATGACTGTGGTATTGGCGATGGGGATATTATAATAGTGGTTTTCGTATTTGGTTTCGGTGAGATACAGGATGCGCCCGTCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATACATTGGCGCGCTTGGAGTGCAAAATTGCCTTAAGATCCGTGGGTTTGAGCGTATCCATGACGTCAATTTCCTTAATGATGAATTTAATTTAATCACACCCATTATAGCCTGTCAAGCGATGATGCGACCAAATTATAAGCTTATATTATCCATCTGCCATATCAGTTATGCTATACTAAATTTGCCATCAGATGATGATGGGTGTAAAAAACCTTTATTTTTTCAACTATTTAAAAACTTAATAAAATCAATAAGTTATAACTAGTCAACTTTTGATTGGATAAAAAGGGTCAATCCATCATAAATGGCTGTTATTTCTTAATTTTTTCGGTTATAATTACT # Right flank : TTGACCCCCGCCACTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : CTTCACGACCGCATAGGTCGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //