Array 1 127-2225 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWSG01000010.1 Cohnella sp. CIP 111063 NODE_10_length_285944_cov_55.4781_ID_2912, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 127 33 100.0 34 ................................. TCTATATCGAATAATTCCGCCACAGACAAAGGTT 194 33 100.0 35 ................................. GTCCCTCGCGTAGTCCGCAAGTCGGGATGGCCCTC 262 33 100.0 33 ................................. TCCTCAGTTTGTACCGCCCGGACGCTGCCTCGT 328 33 100.0 33 ................................. CGGCCGCATCACGTTTAAGTTTGGCGCAATCCT 394 33 100.0 34 ................................. ACGATTACGACAAAAGATCAAGTGAACTGGGCAT 461 33 100.0 33 ................................. AGGATGTGCCGAACTATACGGGAGACATATCCG 527 33 100.0 33 ................................. ACTCTATGTTAAAACGTCACCCCGCAAACATAA 593 33 100.0 33 ................................. CGTTGATCATGCTCCGATTAAATCCGGCTCGCT 659 33 100.0 33 ................................. GAGATACAAGGCTTGGTTGGCCCATGCTGCCTG 725 33 100.0 34 ................................. CCAGAGTTACGGTCGGCTGCAGATATCAAAAAAG 792 33 100.0 34 ................................. CTCTATGATGACTTCGGCGCGCTTGCACTCCGCG 859 33 100.0 33 ................................. ATCCGGACAACGGGTGGGCACCGAACGCGCCGC 925 33 100.0 33 ................................. CCCAGTTGTGACGCGCTTGTCTGCCTTGTAGGC 991 33 100.0 33 ................................. CTCATGTCGCCGCGGTCCGGCGTGGCCGTCACG 1057 33 100.0 33 ................................. CACCCGTCTCTACGTCCGTTTTGCAGCCGTCTG 1123 33 100.0 34 ................................. AATGTTGTATCCGCCACGAGGGAAGAGCCCATAG 1190 33 100.0 33 ................................. GTACCATACCCCGCGCTGATCTTCGCGGCGAAC 1256 33 100.0 33 ................................. CGCTGTATCGCGTTAAAGCGCTACTCTGTGATA 1322 33 100.0 33 ................................. AGCAAGCGATAGGGGAGCAGACATGGCGGCGAA 1388 33 100.0 34 ................................. ACACGTAGTTCACGGAGATATTACGCAGATTAAC 1455 33 100.0 34 ................................. CATAACTCGGGCGGTGTTTATGCATTGATCGACA 1522 33 100.0 35 ................................. CTATCCCCCAAGGGAGAAGGGAGCGACGATATGAG 1590 33 100.0 35 ................................. GGATCGCAATTCAAGAATCTCTACACGCAGCGCGA 1658 33 100.0 35 ................................. ATCTCATGGCACATCTGGGATGTACGAATGTCAAT 1726 33 100.0 34 ................................. TAGAATATCAATATGCCGCGCTCATTGATCGCAT 1793 33 100.0 34 ................................. GTCAAGTTCGCTGTTGAGAGCAGAATGTGCAGTC 1860 33 100.0 33 ................................. CCTTGATTACTAGATGTGGTATAATGAACGTAT 1926 33 100.0 34 ................................. AACCTGACGGAACGAAAAGACACGGTTGTCCGAT 1993 33 97.0 33 ....T............................ CGGTCGTAGTCATCGACCAACGACTTGATGATC 2059 33 100.0 33 ................................. TTTCTGCGCTTCCTGATCGCCGAACATCGCCCG 2125 33 97.0 35 .............T................... ACACCGGTCGGCAAGGGGCCGAAAAGCCGTGTGAG 2193 33 93.9 0 ..........................A.....G | ========== ====== ====== ====== ================================= =================================== ================== 32 33 99.6 34 GTCGCATCCCTCGCGGGATGCGTGGATTGAAAT # Left flank : AACTATTTATCGCGAAAGAATGCTGTCACAAGCAGCATAGCAACGGGATTTCTGCATGAGGGTGTTTTCAAACTGCACTTTTCTTGACAACTCCAGAACGAGGGCGCGGGCGTAGCGTCTGAACTCG # Right flank : GCCCATTTCAGATACATCGGGTGCTTTAGGAGACTGCACTCAGTACAGGGTACGTTAACTGAGATTTTCACATTGTGAAAGGCGGAGAGCACGTGGAACCTTTCGAACTCGAAGGCCCCGAACCTTACACGACACGAGAAAGCATTCTTGAACTGTTCGAGGCGGTGGATGCCGATTTACAAGAACAGAAGCCGATAGAAGTTTTTGTAGTAGGGTACTCCGCTATTGTGCTTGCCAGAAAAAATAATCGTGGTTCCAATGACGTGGATATTATTCCTTCCCGATTTTCGAGAGTGTTCTCGCGCCATGGATTGGAAGTATTCGATGAGCACTACTTTTATTTTCCGGAAGGATACAAAGATAGAGCCGTGGAAGTCGAGCGCAAATTTGCCTGTCTTGCGGTGAAGGTAGTGGACGCCCACGATATCTGGTTTTCCAAGCTGGCGGCATATCGCAGCAAAGATAAAGTGGACATGATTGAGATGATCCGCGAAGGCGTC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGCGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5771-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWSG01000038.1 Cohnella sp. CIP 111063 NODE_38_length_30042_cov_57.0481_ID_8451, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 5770 33 100.0 35 ................................. CTTGACGCCCAAGAACAGGCCGCTAAAGATCGCCT 5702 33 100.0 33 ................................. ATGCACGAGCGCAGATTGGAGGCGGCGTCCAGT 5636 33 100.0 33 ................................. CGCGACAAGCATACGGCCGTTTTTGGGACGACG 5570 33 100.0 34 ................................. GCGGAGGTTGCGGCCCTGCTCGATCTCATCCTCG 5503 33 100.0 34 ................................. TTCGCGGCTCAAATTTTGAGGCTCAACCTCAATA 5436 33 100.0 35 ................................. CTGAGCCTCGCTACGTCGTTGCTGCGGGAAAGTTT 5368 33 100.0 33 ................................. TTGAGCCCCGATATACACGAGATCTTGTCCGTC 5302 33 100.0 33 ................................. TTAGCGTTATCGTCCATTATTAGGACCTCCTAA 5236 33 100.0 33 ................................. CCATAGAGAGGATGGGATACAGAAGGTGCGGGA 5170 33 100.0 34 ................................. GGCATATACGCCCATTACGAATGAGCAGACCTTA 5103 33 100.0 34 ................................. CTTAGTCAAAAGGAGGTAGCAGCTCATCTTGGAA 5036 33 100.0 34 ................................. AAGATAACAACCTTATATCCAGAGGGCTTGTGAC 4969 33 100.0 33 ................................. GCAATTGCAGGGTGAGGAGACCCGTAAGCGCAT 4903 33 100.0 35 ................................. CTCAGGTCATCAATATTACGGATCAGCTTCCCAAG 4835 33 100.0 34 ................................. CTAACGCTGACCTTCCGCGATGGAGCCGTTTCGG 4768 33 100.0 35 ................................. AGAAAGGAGGTAGGCAGTACCTTGGACAAGCCCTG 4700 33 100.0 33 ................................. CCGGAACACAGCATATGGCTCCGCGAGGATCAG 4634 33 100.0 34 ................................. CACTAGAATGCCATCATTTCGTTTCTCGATGACT 4567 33 100.0 36 ................................. CCATGAGTCGTAATTGATTTGATTCGCCAACGCCTC 4498 33 100.0 33 ................................. GGTCCAACGCTTCCTTAACCGTAAAGTTCGTAA 4432 33 100.0 34 ................................. TGGGTGCAGCTTGGAGCAAGTATAAAAAGCGTGT 4365 33 100.0 33 ................................. CTCGCCGAATCCAATGGTCCGGGTGCACGGGCT 4299 33 100.0 34 ................................. TCAGCCAGAACCGCGGCGTTCGCCGTCTTGTCGG 4232 33 100.0 34 ................................. ACACACAAGGAATACAGCGATCCATTTTACAACG 4165 33 100.0 34 ................................. GTTAATATCCATCCTACCACGCTCCTATATGAAA 4098 33 100.0 35 ................................. AAGCCGAACGAGCTAGTGAGACCAACCAAGTCGAC 4030 33 100.0 34 ................................. CGCACCGCAGCTCAATTTGACATTGACCGTCGAG 3963 33 100.0 33 ................................. TCCTATGCTTGATGCGTTCATTTATAGTTGCCA 3897 33 100.0 33 ................................. CTTTTACCATATCCGCAGCTCGAACTTCTATGG 3831 33 100.0 34 ................................. GAATCCAACCCGCTCCATGTCCGCGATATAGATG 3764 33 100.0 33 ................................. AGGGATATAGAACCACTTATAGAAAGGGGCTAA 3698 33 100.0 33 ................................. GCTAGCGTCCGGCGTCTGGACCTGGCTGAACCA 3632 33 100.0 34 ................................. ATGACGCCCGGAGCTCGGACGCTGCAGCAATGCG 3565 33 100.0 34 ................................. CTCCATATTGCGCCGAAACTTCGGCTTCTAGCGC 3498 33 100.0 33 ................................. ATATCACGGCATCACCTGAAGAGATGAAGGCAA 3432 33 100.0 34 ................................. TTAGCGATAAATGTCTCGATGAAATCCAGTGCCT 3365 33 100.0 33 ................................. GATCAGCGTCATGATCGCCTGAACGGCTGACGT 3299 33 100.0 33 ................................. CGTAAATGGATTACAAGCGAAGTCATTCCGTCC 3233 33 100.0 34 ................................. CGGTCATGTCCGACCTGAACGATTCGGAAACCCA 3166 33 100.0 33 ................................. ATTCAGCGCGGCGCAAGCTTCCGTCCAAATGGC 3100 33 100.0 35 ................................. AGTACGACGATGGTCGTCCGGACGAGGTTCATGAC 3032 33 100.0 33 ................................. CGTCGTAACGCGCGGTACCTTTGAATACCGTTT 2966 33 100.0 34 ................................. ACGATGTGGGCGAACGACTGGACGGGACTCCCTT 2899 33 100.0 34 ................................. CGCTAGACAAAGCTCTCTCCAAATACGATAACGT 2832 33 100.0 33 ................................. ATCTATTCGCGTTGACGTAAGCGACGTACTTTT 2766 33 100.0 33 ................................. AACCGCAACAATGAGTTGATCTTGGAGCCTAGA 2700 33 100.0 34 ................................. CACGCTTCCCCAGCGCCTCCCTGAGACGCCAGAG 2633 33 100.0 33 ................................. ATTGATTTGTGCTCTCATTTTCTACCTCCTGTT 2567 33 100.0 33 ................................. AACGGGCTTGCCTTCGGATAGCAGCTCGGACGC 2501 33 100.0 34 ................................. CTTGCATCGGGGTCACGGTGATATTGCTAACGGC 2434 33 100.0 34 ................................. GTTGCCCCTGTCCCCGTCGCCCCTACCCTAGCGT 2367 33 100.0 33 ................................. CTGAATGCCGAGCACATCCACGCTCCGGCCCAT 2301 33 100.0 33 ................................. AAGAGCAGGAATTACAGACCAAAGCTTTGCAGA 2235 33 100.0 34 ................................. TAAGGAGGTTTCATATGTTCGGTTATAATCCCGC 2168 33 100.0 34 ................................. ATCTTAAGACCTCCGTTTTACAACGATGCCCCAA 2101 33 100.0 32 ................................. TCGGGGGTCGACATAGGGCCACGGGTTGACGC 2036 33 100.0 33 ................................. CTCAAAATCCAGCTTGACCGGGGATGCAATCGT 1970 33 100.0 34 ................................. CCAGATGTTCGGCGTGCCGCTCGAGCGGATCGTT 1903 33 100.0 34 ................................. GAGTCAAACTACTATATGAAGGACTGATACTAAA 1836 33 100.0 32 ................................. GTCGAAAATTTCCCGGAGGGCGGCGAGTATGC 1771 33 100.0 35 ................................. CGGAAGCACCGGACATCCGAGTCCCGCGCGGGCTT 1703 33 100.0 34 ................................. TTTGCAGCAAGTCTTTAATCTTCAAAAAGCCCGA 1636 33 100.0 34 ................................. CGACCAACATTACCCAAGTATCTCCACAAACCGT 1569 33 100.0 34 ................................. CTGTCCCGATCCTGGGAACGATCGCGTGTGGCGA 1502 33 100.0 34 ................................. CGTTAACGACTCGAACTCGTCTATGTGCCATCAG 1435 33 100.0 33 ................................. CATGCGTTTGATCACTTTATAGCCTTCTGGCAT 1369 33 100.0 34 ................................. CTCCAATAGGTTTATAGTTTGTTTTGAAGCAGTA 1302 33 100.0 33 ................................. TTGCCGAAAGGCCGGTATTCGAAGATATTCCTT 1236 33 100.0 33 ................................. ATCGCGTTGGCCAACTCACGAATACTCGGTGCA 1170 33 100.0 34 ................................. CTAAAACGAACTGGAGGACGAAATGAAGGGGAGA 1103 33 100.0 34 ................................. TCTTTGCCCGTGATGCCGTACGTCCGCTCGAGAT 1036 33 100.0 34 ................................. AAAGAGCGTCCGCTCTATGAGCCTGACATGGACA 969 33 100.0 34 ................................. AAGACGGATGGCAGCACAGGCCTGCACGGAGGTT 902 33 100.0 35 ................................. CTGGAGCGAGGCGGATTACAACGTGACGACGATCG 834 33 100.0 33 ................................. AGGATGCGAACGGGCGGGGGGCCGTACACTATC 768 33 100.0 33 ................................. ATCGAAAATGCCTATAATCAAGTGCGTCCGCTG 702 33 100.0 34 ................................. ACTTCGATGCCGTTAATGACGGCTGTCGAATCAT 635 33 100.0 33 ................................. TCCGAACAAACTGGAGCAAACCATTAACAAGGC 569 33 100.0 33 ................................. ATGGACAAGCCTAGAAATCCAGCATATGCGACG 503 33 100.0 33 ................................. ACAGCAACGAAGACATGATCATGCGCCCTACTA 437 33 100.0 34 ................................. AGGTATCCGGCTCTCCCCCAATCGCAGGGTCAGG 370 33 100.0 34 ................................. TGGTAGGACGCCACGTGTACCACTCCCCTTTTTT 303 33 100.0 34 ................................. ATGTTGTCCTCGGGAATGTAGGCATCAAAAATAG 236 33 100.0 33 ................................. TGATTTGACGAGCCGAAAACGACTTGGTGTAAG 170 33 100.0 33 ................................. AGCTTGCCAGAGAATCTATAGGGTTAACTATTG 104 33 100.0 34 ................................. ATTTTTGCTTACGGTCGATCACGTTAAGAGTCTC 37 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 87 33 100.0 34 GTCGCATCCCTCGCGGGATGCGTGGATTGAAAT # Left flank : ACCTCGACGAGTACCCCCCTTTCTTGTGGAAGTAGGTGAACGTGTTTGCTTGTATTGATCACTTATGATGTCAGTACGGTCAGCAGCGCAGGTCAGCGAAGACTGCGTCTGGTCTCGAAGGCTTGCCAGAATTATGGCCAGCGAGTACAGAACTCCGTATTCGAATGCGTTGTCGACGCCACTCAGTTTGCAACGCTCAGATTAAAGCTGCTTGATCTGATCGATCCGAAGGAAGACAGCCTCAGACTCTATCAACTAGGCAACAACTACAAGAGCAAAGTAGAGCATGTCGGCATAAAAATGGCATTGGATTTGGAAGGCCCGTTGATCCTCTAAATCAGGTGCGAATGTGAAGCTCCCATAAAAACCCTGGGGGATTCGCACCACAAATAGGCTTCGATTTTTACTTAAATGTAAATTTTATGCATTTAATAAGGTTGATTAATGAGTTATAGCGAAGTTTAGCGCCTGTTTTAGGCTCTTTTGGCCTAAATTTCGCT # Right flank : TAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGCGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.50,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 78572-78341 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWSG01000008.1 Cohnella sp. CIP 111063 NODE_8_length_296556_cov_53.4763_ID_1415, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 78571 32 100.0 34 ................................ CGGTGTCCTTGGCCTCTTGCAGCTTGTTTTCGAG 78505 32 100.0 34 ................................ ATCCGTAAAAGCGCGAACGGCGCGGTCTTTGACA 78439 32 100.0 35 ................................ GGCGGATTAAGCTTGTCCTCCACCATCTGCTTAAA 78372 32 81.2 0 ......................A.CCAA.T.. | ========== ====== ====== ====== ================================ =================================== ================== 4 32 95.3 35 GTCGCTCCCTTCGCGGGAGCGTGGATTGAAAC # Left flank : TTCTCAAAAAAATAGCGCAACATGGATAGGTTTAGCGTTTTTCCGAACCTTCGGGGGCGTGCGATCAGATTAACCTCGGCGCCATCATCGAGGATGTCCTTGATGAGCATCGACTTATCTACATAGTACAAATTACGCTCATGAATCGCTTTAAAATCATCCACTCCGATTGGCATCCGCTTCACTCTGCACACCGCCTTTTTTTCATTACAATTAGTATAACTCAAGCCATATCGCAAACCAATAGTGGGGTTAATTGTTCAAGAATGACGAATAGATAGCTTTTATGCTTTGGAAAAATACCGCTCACTGAATTATACTGAAACTATGTGGTGCGAACCCCAAGCTCACATGATTTTCCCGGGAGATTCGCACCTCTTGCTGCACAAGGGCTCCCGGCTTTTCACGTCATTTTTGAGCCTGCTTTTCTACTCTAAAAATACCGATTCGCACTTTTGAGCCTCAAATCCCTTGCCACGCAAGGGCTCAATAGGCTCGCT # Right flank : GCGGCGGGTACTACCGTGCAGGACCATCTGGAGCCTTGGCTCAAGGATCTGCCGAAGCTCGATCTCATGAACGGATTATCCCCGGAAGCCGTTCTCGGCCACGATCCCGATCTGATTATCGTCACCCCGCATTTCCTTCCTCTCGAGCAGTTGGCCTGAGGCCGCATTCTCTCGCTACGACGGTTCCGGACAATTTCGCGCAATTAAGCTTAGAGAAATTGGCCGAACTGGACGCAGATAAGCTGTTCGTCATTACGCCGGAAGGACAGACGGACGAACAGGTGCGGGAACTGCTCGCTTCGCTTCCTCTATGGAACAATCTGTCGGCCGTCAAACAAAATCGCGTCTACCAGGTGGCCTCCGGACATTGGATTAATTCCGCTTACAATGCGAATCTGGCCATCCTTAAGGACGTGCTGGACACGGTGGAAAAATAGAACAAAGCCGTCTCGCAGATCCTGCGCCGCAGAAGACTAATCTTATTACGAACCTTTTGTAAA # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.80,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 81865-80804 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWSG01000008.1 Cohnella sp. CIP 111063 NODE_8_length_296556_cov_53.4763_ID_1415, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 81864 31 96.8 32 ...........T................... GGGCCGCTCTGGCCGACATCGTAATCGGCGGA 81801 31 100.0 33 ............................... AGCGCTCGGATCTGGCTGGACCGGACGAAACTT T [81791] 81736 31 100.0 34 ............................... TTGAGCGATCTCGATATCTGTCCGCGCTTCAGCA T [81726] 81670 31 96.8 34 ...........A................... AGCTAATGCTCTTGTGACATCCTCGGAAGCCGGA C [81662] 81604 31 100.0 32 ............................... TCTTCAATGGGATATTGTTCCTGGGGCAGAAA 81541 31 100.0 33 ............................... CAGTTTGCTTTTGAAATCTGCCATTTGCGTCTC 81477 31 100.0 33 ............................... TCTTGTGAAACTGAATCATCCGGACTCACCGAC 81413 31 100.0 34 ............................... GCTGTCCTTGCGCTGTAACCGGACCTGATAGCCG 81348 31 100.0 34 ............................... CAAGCATACCGGACCGGATACGCTCCATAACGTC 81283 31 100.0 34 ............................... AGCAATATCGAGCAGCAGTCCATAGAATTCGTTA 81218 31 96.8 34 ...................A........... GATGAATATGTTTGCAATAATTAAGCGGGAGAGT 81153 31 100.0 33 ............................... GAGCTAATCCCGATTAAGAAACGCGCAAGGTAA 81089 31 93.5 32 ............T.....T............ TTTAATGCGCCCAGGCACGACCACTCCGATTG 81026 31 100.0 34 ............................... TGAGACAGGATCAAGGTTTTTTCGCGGCCGTCCC 80961 31 96.8 33 ...................A........... AAAAATCTCCGTTATCAGCAGCGAGATCTCAAT A [80954] 80896 31 83.9 30 ..........T..A..G............CA GCGCTCTGACAATGACACCGTATCTTGGAG T [80883] 80834 30 74.2 0 ........C.T........-.A....CT.CA | C [80824] ========== ====== ====== ====== =============================== ================================== ================== 17 31 96.4 33 GTCGCTCCTTCGCGGGAGCGTGGATTGAAAC # Left flank : GAGCTCGGCTATCGCGTCCCGGAGGACATTTCCGTCATCGGCTTCGACAACATCAACGAATCCGTCATCGTCACGCCTGAGCTGACGACCATCCATGTCGAGAAGGAAAAGATGGCCAGGCTCGCCGTCGACCTGCTGACGGATCCGGCCGAGCACGGCTCCGACGCCCGGATGAAAATCCGCGTCGACACCCGTTTCGTCGAACGCCTGTCCACCGCCTCTCCGGCGTCTGTCCTCCGGACCGTTTGAGTCTTGGAGCGGTTGACTTTTTTCGCCGCCGCAATAACGTCACCAAGCGAGCATAGCGTCTACGTGGTAAAATAGTTTTATTGGTGCGAACCCCAAGCTCACATGATTTTCCCGGGAGATTCGCACCTCTTGCTGCACAAGGGTTGTCGGCTTTTCATGCCATTTTTGAGCCTGCTTTTCTACTCTAAAAATACCGATTCGCACTTTTGGGCCTCTAATCCCTTGCCGGGCAAGGGCTCAACAGGCTCGCT # Right flank : AAACGTGCATTGCTCACAGGAAATCCCGCAAGTTGTGCCCTACATAAGAAAAGTACAATAAAGAAAAAAAAGGACGCCGCATGAGAAACGCATGAGACGCCCTTTTTTCTCCTCAGCGGAAGCGCAGATTTAACTTAATTTCGGAACAAACTGTTGCAAATCGTTATCGATCTTTCTCTCCCTGAAGTTTTTACTTGGAAATTACTTTTCCCCCTGCTCCCTGCCCTTAACTTTTACCCGCTTACCTTTAAAAGCAATACCGAGCTTAACGATACCCTGAATGCCGCGAGCGTGAAGCTCTGCCTCATATCGCTTCTCATCGATTTGAAGCAAAGCGGCGTCAAGCGCTTCGTCTAACGACTCTTCCCGTATTGCATCCGCCCTCTTAAACTCGAGAATAATCCCCTTCCGTCCCTTTTTACGCTCGCGAGGCACGATCATTACGTCATGTCTTCCATAGCCGCTCTCACGATTAGAAATCACCTCGTACTCCTTATCAA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTCGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 3 167081-166591 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWSG01000008.1 Cohnella sp. CIP 111063 NODE_8_length_296556_cov_53.4763_ID_1415, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 167080 32 100.0 33 ................................ AATAAAGATATCCGCAAATCTGTCGGCCTTAAG 167015 32 100.0 35 ................................ GGTACTGGTGGAGGTTTATTACTAGGAAGCGCAAG 166948 32 100.0 34 ................................ CGTTCGGATCGATGGTAAAGACCTGAGTTCGGCC 166882 32 100.0 34 ................................ TAAGGAGGTAACGGACTAATGCCTTTCATCGACA 166816 32 100.0 33 ................................ TAGATCCAAAATATTACACGACACGATTCGACA 166751 32 100.0 33 ................................ GACTGTACAAGGAATTAGGTAATGCTTTTGAAG 166686 32 96.9 33 ...................T............ TATATTATCCCTAATCAAGAAGCTAAAGCTGCC 166621 31 81.2 0 .C......C.-.G.A.....A........... | ========== ====== ====== ====== ================================ =================================== ================== 8 32 97.3 34 GTCGCTCCTTGTACGGGAGCGTGGATTGAAAC # Left flank : AACAATATCGGAAGATCCGTTGTTGATAGTCCTCGACCAACTCTCCGTAACGTTCTTTGTCTCCTTGTTTGACAGCTTTTACGATTCTTTCCGTTTCCGACCGCTCCATGCCCCGCCTCCTTCCCAATGTTTACCGTTTCGTTTATATAACCAACACTCTCGCTGTTTTGGGACATTTCACGATAATTAAATTCATTTATCGGAGTTAAGGCTTCTCGGATTAGATCAATTTGTCCAAAAGTGTACACGAGTCTTGAATCTACTTTACTAATATCGGCATCCACAACTCTACAAAAAAAGCTTATAATAAAATCGTTATATGGGTCGAGCCGGTGCGAACCCCAAGCTCACATGATTCTCCTGGGAGATTCGCACCTCTTGCCGCACAAGGGCTCCGGGGTTTTGAGAATGTTTTTAAGCCTCTTTCCTCGCCCCCAAAATGACGATTCGCACTTTTGAGCCCCAAATCCCTTGCCACGCAAGGGTTCAGATGGGCTGCT # Right flank : AACTCCGGCAGGAATGTAACGTACCAAGTTCACTCCCTACCCCAAAGCAAAAAGCCGACCGACAAGGACCCGGAGACCCGGGGACCTGGCGATCGGCTCTTTTCACTCGTCGGCGGAGACCGTCTCAGGGTCTCCGTACAACCACACTTTAACGGCGACGTCCGGCTTCGGGTCGCCTATGAACTTGGCGCTGAACGACAGCGTTTGTCCGCCATGACGGACGGTCGGAGCTTCGGCGGAGGCTTCGACGACGCGCAGCAGGTTGCGGTTCGCGTCGTAGACGCGTCCGGTCCGGGTGCCGTCGCATTCCAGATACTGATTCGCGGCGATTTCCGTATCGAACGTCATATAGACGCCGTCGGTGTAGAAGGTGGGCCGCTGCACCGCAGCGTCCTCGTTGCCGTAGGACGGACGCACGCGCATGGTGAAGCGAAGCGGCTGCTCGGCGTACTTGTTGAACATCGCCCAATCCGAGCCGCCCGGCTGTCCCGGCTGCTGTT # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTGTACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTGTACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 170332-169576 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWSG01000008.1 Cohnella sp. CIP 111063 NODE_8_length_296556_cov_53.4763_ID_1415, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 170331 32 100.0 33 ................................ TGCTAACACCAAAACTCCATATCATCAAAACCC 170266 32 100.0 35 ................................ GTACTGCCAGCGCTCGACTACCGGGCCGCTTACAA 170199 32 100.0 34 ................................ ATTGTTATTTGCCCGATTGCATTAAGCCGACCCC 170133 32 100.0 34 ................................ CTTCTACATCGTACCGGTATTTACCGCTATGGAG 170067 32 100.0 35 ................................ TTCCATGATTTTCTCATAATAGGACTCAATTTGGG 170000 32 100.0 34 ................................ CGAACGGCGGCGAATATCAAGCTATTTTGGATAA 169934 32 100.0 34 ................................ TAGAGCATCCCCTTGAATAAACGTATACGGATAG 169868 32 100.0 33 ................................ CCTTAATTCAGGGGCGGGGGATTTTTTCTAGGA 169803 32 100.0 33 ................................ TCCTTCTGCGCACGCTCCTGGAGACGGGCTAAC 169738 32 100.0 33 ................................ CAACGTTGACGAGGAAGAGTTGGTCAACGAGAT 169673 32 100.0 34 ................................ CACGCAAGGCGTGTTCAAGGACAACAGACAACTC 169607 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 12 32 100.0 34 GTCGCTCCTTGTACGGGAGCGTGGATTGAAAC # Left flank : GAACCTCCGAGGGCGTGCGATGAGGTTAACTTCAGCTCCATCATCGAGAATATCCTTGATAAGCATGGATTTATCTATATAATACAAATTCCGCTCATGAACGGCCTTAAAGTCATCCACTCCGATTGGCATCCGCTTCACTCTGCACACCGCCCCTTTTCTTCATTATGATTAGTATAACCCAAGCCATATCGCAAACCAATAATGGGATTAATTGTTCAAGATCGCTGGAGGTAGGAGTGCGTTGTATCAAGCACGACGTAAAGCAACCTATAATCTATCATAATGACTTCCACAACCTCCCAGTAAGAGCTTATAATAAAGTTATTCTGGTGCGAACCCCAAGCTCACATGATTTTCCTGGGAGATTCGCACCTCTTGCCGCACAAGGGCTCCGGGGTTTTGAGAATGTTTTTAAGCCTCATTCCTCGCCCCAAAAATGACGATTCGCACTTTTGAGCCCCAAATCCCTTGCCACGTAAGGGTTCAAATGGGCCGCT # Right flank : TGCGACCTCCAGCCGCTTGGCCGAATAAAAGACGTCGCTCTCTGCACGTTCACCGTAAAGGAACGTGAATTAAACAAGCCGCAAGACCAGTTGCCAGTCGTCCCCAGTCAAAAGACGCTCCCTCAAGGGAGCGCCGAGTTGCATTGTACTTTTAAACGCGTTTCCAAAAGCGCCCCCACCAACCTACTCGCGAATCTCAAAACTTACCACAAGTTCCTCCTGCAACTCAAGATCCGTCTGAGGCATTGTCCCAAGGAAATAGGACTGCGACGCATCCAACGCAGGATACTCCAGAATGTACTCGTAAGATGTATCGCTGACCCTGGTCCGCTTCCCATTATCCGAGATGAACCGCTGTCCATCCGGCGTCTCCAGCCAAAGCGAGGCGTATTGGATATACGGGTTCTTACCTTTCACTTCATAGTGAATCAACGTTTTATCCTGCAAAAACTCAACGTTCTGCACCACAATCTCTCCTACTTCTCCCTGCGACAACACGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTGTACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTGTACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 173023-172593 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWSG01000008.1 Cohnella sp. CIP 111063 NODE_8_length_296556_cov_53.4763_ID_1415, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 173022 32 100.0 35 ................................ GCCCAGGCGGATGATTTCGCCCGCCGTGATCGGGA 172955 32 100.0 34 ................................ CTGACCGTCGTGCATGAATCCGGCGACGATCATA 172889 32 100.0 34 ................................ CTGTACCTGCAATGCGCACGGTATATGGACGGCA 172823 32 100.0 35 ................................ AGTGCCTTGATCCGCTGCTTAGCCGTCCCTAGCAC 172756 32 100.0 34 ................................ CTTTCCATGGACGAGAGTTTACGCGGAACTGGCG 172690 32 100.0 34 ................................ GGATCCGGTGCGGTGTTTTTCAATAAAGCTCCGA 172624 32 93.8 0 .................GA............. | ========== ====== ====== ====== ================================ =================================== ================== 7 32 99.1 34 GTCGCTCCCTGTACGGGAGCGTGGATTGAAAC # Left flank : GTCAGGTCCCTGAATTAATAGCGAATTTTACGCAATGGCTTGAAGAGGAAGGAACTAATTTACACCCAGTTGCCAGAGCAGCAGTAATTCATAGCGAATTCGTAAAAATTCACCCTTTTGTCGATGGTAACGGACGAACTGCCCGACTTCTGCTTAACTTCGAGCTCATGAAAAACGGGTATCCTCCTATTGTCATCGAAAAAGAACAGCGTCTTGCCTACTATACAGCCTTGGATGAAACGCACATGACTGGAGATTTTTCGACGTTCATAAATTTCGTAACCCCCATTGTCGATCGAACCTTCGACTGGTATCTGAACTTGCTGTAATTAGTGCGAACCCCAAGCTCACATGATTTTCCTGGGAGGTTCGCACCTTTTGCTGCACAAGGGCTCTCGGGTTTTTATGACATTTTGAGCCTGCTTTTTCCGCCTCAAAAATGTCGATTCGCACTTTTACGCCTTAAATCCCTTGCTCAGCAAGGGTTCACAAGGCCCGCT # Right flank : GCTTGTGCGCAGATCCCGCCGAGATTGCAGCCTCGTCGCCCTGGGGCGTGGATTGAAACAAACAAGACATATGCTGCCGATCTGAGCGGAACATCGCATGGGAGCGAAATCGCCCCTACTACTCAAGCACTACTCAATGCAAAGAGCGACCCTTAGGAGCATCTCGCCCCAGGGTCGCTCTTTATAACTCCACCAAATTAATTAATTCCCTTATTAACCACTCTGAACCTTAACTTGCTTTCCCTTGAAAGCAATCCCCAGCTTGACAATGTCCTTAATACCTAGCGCACGCAACTCAGCTTCATATTGCTTGGTTTCAATCTGCCGAAGAGCAGAGACAGCAGCTTCATCCAGCGACTCTTCTTCGAAGCGATCAGCTTTCTTGAACTCGATGATAATCCCTTTTTGTCCTCTGGATGAATCTCGGGGAATGATCATGACATCGTATCTGCCATAACCGCTCTCACGGTTAGACCGTACTTCGTACGATTCTCCCAAAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTGTACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 187683-185609 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWSG01000008.1 Cohnella sp. CIP 111063 NODE_8_length_296556_cov_53.4763_ID_1415, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 187682 32 100.0 35 ................................ ATTCTATCATGATGAGCGTTTCTCTTTTGTGATCG 187615 32 100.0 33 ................................ TCCATCTCGGGGCCGTACCAGGGATCCCCGTGA 187550 32 100.0 34 ................................ CGATCTTGACGCTTAAACCGGTTGCGACGTGGAT 187484 32 100.0 34 ................................ CGGTGTAACCGGTCTCGATCGGGTACGAATTACT 187418 32 100.0 33 ................................ GGTCTTGCATGTACTGCGTGTAAAGCTTCTGCT 187353 32 100.0 34 ................................ GTCCGGTCCCCGTCGACGTCATTCAATACGCCAG 187287 32 100.0 33 ................................ ACGACGTAGGTGTCCGGCTTGTCCTGCCCGCGG 187222 32 100.0 33 ................................ TCGCGGGTACGGCGAACGCTTCCGCTACCGGAG 187157 32 100.0 34 ................................ CGCAATGGACGAATCCGTACACTCTGCGACGAGC 187091 32 100.0 34 ................................ GGCGGCTGCGGCTGCATTGCGGCAAGCTGCTGCT 187025 32 100.0 35 ................................ CTTCATGAGTCATTTTAGAAATTGGATAAGCTGCA 186958 32 100.0 33 ................................ GTCAAGTTGTCCTGGTAAAGAATCACAACTTGA 186893 32 100.0 35 ................................ ACAGGGTCGTGGTAAGTGCGACTAAACGTCAGCTC 186826 32 100.0 34 ................................ CACGTGGAACATCAGAATTTTACAATCTTAGACA 186760 32 100.0 33 ................................ TCATGTCCGGCGTCCTGAACGGTCAGGCCGCGC 186695 32 100.0 34 ................................ TTAGCCTGGCTGCGCTTCTTGCGATGGGAGAGCT 186629 32 100.0 33 ................................ TCCCTTGTTCCGGTGTCGTTCCGCTCCGGCCAC 186564 32 100.0 33 ................................ GGTGAGCGATATGCCGATTCGTGGGACGGAAAG 186499 32 100.0 34 ................................ CGCTTCCTTACGTACTGGGAGTTAACTGGGACGG 186433 32 100.0 35 ................................ TCGCGGATCAGGCTAAGCGTCACGAGCAAGAGCAG 186366 32 100.0 34 ................................ GCCGCCGTGGAACAAGCGTTTAAGGAAATTGTAA 186300 32 93.8 33 ...........CA................... GCGTAGATAGTTGAACGCGAGGCTCCCGGTCGT 186235 32 93.8 34 ...........CA................... ATAGTGTCACTCCTTCGGTATGATCTGACGGACT 186169 32 96.9 33 ............A................... CAAAAAATAAGCGTTGTTTGCCTTCGCAGACTG 186104 32 96.9 36 ............A................... GACGAACCGTATGCGTCGCCTAACTCGTTTCGGAGG 186036 32 96.9 34 ............A................... TCGACTGAATTGGAGCTGAACTAAATGGCACGCA 185970 32 96.9 33 ............A................... AGCCGGTTGCCCAGCAGACTCGCAGGGGCTTCG 185905 32 96.9 35 ............A................... ACCTGCTGTAAATTCCCCGAGCAGATACTTTCGAT 185838 32 96.9 34 ............A................... TCGTCAGACGGGACTCCGTGCTTGTTTTTTACGC 185772 32 96.9 35 ............A................... TCCCCGTTCGTCATCTCCGGTCGTGATCTGGCGCT 185705 32 96.9 33 ............A................... ATGCTGGGATAGATCTGGTGCAGACTGATCGAG 185640 32 93.8 0 .........T..A................... | ========== ====== ====== ====== ================================ ==================================== ================== 32 32 98.6 34 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC # Left flank : CTGCGTCGGAGGAAGCGAAGCCGATTCCGTCGGCTCGGGCGCCGTCTCCGTAGGAGCAGCCGTCGGCGACGGGGTGGACGTGGGCGCGTCGGGCTCATTGCCCTTCGCTCCGCATGCGGCAAGAACAAGGGATAATACCAGTATAGTAGCTGCTGTCTTTACTCGATGGTTTTTGGTCACTGCGATAACCTCCCAGTATAGCTTATATGTCTACAGGTTACAACGTTTCCGGCTGGCAGGAAGTTGCAGGTACTGAGTTAAAATTGGAGAAATCTTCTAGGCCAAAAACCGTTTTTTTAACCTATCTATGATAAAATGAAGACGATCGCTGCTTTCGCGAACCCCAAGCTCACATCATTTTCCAGGGAGGTTCGCGCAGCCCGCAGGATAAGGCTTCTCGGCATTTTTACCCGGCTGTGCCTCCAACAAAACACTTCGCTGAACGAGGTTCGCGGAAAAGAGCCGAGATCTCTTGCTGGGTAAGGGATTATTGCGATGCT # Right flank : CTTTGCTGCGGCAGCTTCAGCCCCTTGATTAGGAGGCGCTTCTTGTGCGGGAGAGTGAATCTACTATGTGTAGAACCACAAAGCCCTACAGCAACATGCTCCCCGCACATGAGCACGGCTTTGAAAAAGTCAAAGATTAATTCGCATCTCCCCGAGCCTTCAACAACCGTTCCCCATAATCCGGGTCCTCCAACAGAGGGGATCCGATAGCGATACAATCGGCCAATCGATCCTCGAGTATCCGATCTGCGAGACCGCGGTTGTATATCTTCCCGACGGCGATAACCGGAATATTGAAGTGCTGCTTGATTGCTGCTGCATGAGGCACTTGATAGGCAGGATATACATCGCTGGGCTTTACGGGAAGAAGTCCGCCGCTGGAAACATGGATGCCGTCCAGTTGCGACTCGATCGGCTTTAATATCCGTGCCCACTCTTCCGGGTTTAGCCCCCCTGTCCAATAGTCAGTAGCGGAAATCCGTACGATAACCGGGTAATCC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC # Alternate repeat : GTCGCTCCCCGTACGGGAGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //