Array 1 64525-64906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOAU010000008.1 Bifidobacterium longum strain MSK.5.15 NODE_8_length_110302_cov_394.372, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================================================================================================================== ================== 64525 26 81.5 138 C....G...-...........G..C.. AGTGCGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTGCGGTCCGAGCCACGGCCACGGCCGCCACGGAAACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCGATC G,C [64527,64529] 64691 27 100.0 54 ........................... ATCATCTCGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC 64772 27 100.0 33 ........................... ATCATCGCGATCATCGCGATCGAAGTCACGGTC 64832 27 81.5 21 AT.G..G.................G.. GTCGTAATCATCCTCGAAGTC 64880 27 81.5 0 AT.G..G.................G.. | ========== ====== ====== ====== =========================== ========================================================================================================================================== ================== 5 27 88.9 62 GGCAGAACGACGGCGACGCGGACGATC # Left flank : GCCATGACTCGGACATGGCGCGGCACGGCAAGCGGATTTTGCTGTTGGGCATAACAACAGACGAGAGAATAGATCCGGTCGTGAGCAACAGGATAGGTGCCATGCGGTGCCGTGTACAAACTGTTGTCAGTTGTCAACGCTTTTTAGCGTGGCTCCAATCATCTTAATGGCTGTTTTCCGCCATTCTTGATGCATGAGAATAGTTGTCAACTGACAACTGAATGTACATGGCAGCAGCACGAGTGCCCTATTCAACATCGAAATATGTAGCGCGAAGAAGCCGAAAAACCAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATTAAGCTCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTGCGGGCTTCCCGTAGGTGAGGGGGGGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGCTTTAGTCCTCGAACGGATCAAAGT # Right flank : CGTCACGATCGTCGAAGTCACGGTCATCGCGATCGGAGCGACGGCCACGGCCGCCACGGCGATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGGATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACGGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCAGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCGATGGAATCGATGATGGACTTGGCCTTCTTAGCGGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTATCTTCC # Questionable array : NO Score: 4.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:-0.65, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCAGAACGACGGCGACGCGGACGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 62402-65511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOAU010000009.1 Bifidobacterium longum strain MSK.5.15 NODE_9_length_108947_cov_386.151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 62402 36 100.0 28 .................................... CGCCGAACAATCTTATTCAGCACTGATT 62466 36 100.0 28 .................................... TCCACCGACGTGATGGACAACTACACGA 62530 36 100.0 28 .................................... TCATGCGTCGTAATGTGGAGGCTTCCAG 62594 36 100.0 28 .................................... AGGCTTCCAGCAAGCCGTCGATCGTGGT 62658 36 100.0 28 .................................... CTTGCGGGTCCCATATACTGCGCAGGGA 62722 36 100.0 28 .................................... GAGACCGGCGTCACCGTATGGCGCGACC 62786 36 100.0 28 .................................... TTGTTAATCGTATCGGCATGACCTACGT 62850 36 100.0 28 .................................... AACTCTGCCTTGATTTGCGGTGTCTCGA 62914 36 100.0 28 .................................... ATGTTCGGCCAACCCGTGCGCGTCGAAC 62978 36 100.0 28 .................................... GTAGGTGGTGCGCAGTGTTGCCGTTTGC 63042 36 100.0 28 .................................... TTTTGCAGTTCCATGCCGATATAGTCGA 63106 36 100.0 28 .................................... TTTTCCTTCCATATATGAAAAAGTCGTA 63170 36 100.0 28 .................................... GGAGATTAAAATGGCAGATGACACCGAA 63234 36 100.0 28 .................................... TACCTCGCAGACACTATCAAATACATCA 63298 36 100.0 28 .................................... TATGGTGACTGACATGATTGTTTGAATG 63362 36 100.0 28 .................................... CAGACGTGCGCAATATCACGCGCGACAA 63426 36 100.0 28 .................................... TGGACTTGCGCGTTGATTCCGGCGATAG 63490 36 100.0 28 .................................... AATGATAAGCGCGTAAGTCGTGTACTGA 63554 36 100.0 28 .................................... TGATTGTTGGCGTCAATCGCAGCATTCA 63618 36 100.0 28 .................................... CCGTCCATGGTGTCAGTGTTGAAGAAAT 63682 36 100.0 28 .................................... GAAACTCTGCCACACGTCCAGCATGAGA 63746 36 100.0 28 .................................... TGACTGAACTGGCATTGAACCGGTTCAG 63810 36 100.0 28 .................................... ATTGCCGCCGTCGCTCAAGCGCTGCTCA 63874 36 100.0 28 .................................... TCTATTCTCCTTTCGTCTATCTTCTACA 63938 36 100.0 28 .................................... TCCAGCGTTTCATCACCCCGCCCGCTTC 64002 36 100.0 28 .................................... CGTACATTGATGACTGAGGCGAGATGCT 64066 36 100.0 28 .................................... TTCGCTCCCGTAACTGGCCGACGTGTTC 64130 36 100.0 28 .................................... TAGGCGATGCCGTTGTTGTTGCCTGCGC 64194 36 100.0 28 .................................... GTAAAGGGTGGCGTTTTGTCGAAGTCAC 64258 36 100.0 28 .................................... GTCGTGTCGGTATCACCGTCACCGTCAC 64322 36 100.0 28 .................................... GGTCAAGTAGGGTCATGCGGGGTCAAGT 64386 36 100.0 28 .................................... GGTTGGTTCGATGATGCAACACCTATAC 64450 36 100.0 28 .................................... TCGGTGACCTTCCACCAGGCGGCGACCT 64514 36 100.0 28 .................................... ACATTTTGCCCACATTATCCAGATAAAA 64578 36 100.0 28 .................................... TTATCAATGAAGTTGCGGACGATGTTCG 64642 36 97.2 28 ....................G............... CGCGAACTTAACGGGGAGCCGGCGTTCC 64706 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 64771 36 100.0 28 .................................... CGTCTCGTGTTCTGGGCCCTCGTGTTCG 64835 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 64899 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 64963 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 65027 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 65091 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 65156 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 65220 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 65284 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 65348 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 65412 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 65476 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 49 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTACGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCAACTGAATATCTTTAAACTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 1797-791 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOAU010000016.1 Bifidobacterium longum strain MSK.5.15 NODE_16_length_57171_cov_390.655, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 1796 28 100.0 33 ............................ GCCGTGGCGGCACGGGTATGGTCGCCCGCACTA 1735 28 100.0 33 ............................ GAGCGAGCCAGCCCCACCAAGGAATGTAGATGC 1674 28 100.0 33 ............................ TTCTTCACACCATTCCTCTATTAGATCAGCTTC 1613 28 100.0 35 ............................ GGTCGTTGGCGTGACGGGTATGGTCGCCCGCACTA 1550 28 100.0 33 ............................ GAGCGAGCCAGCCCCACCAAGGAATGTAGATGC 1489 28 100.0 33 ............................ TTCTTCACACCATTCCTCTATTAGATCAGCTTC 1428 28 100.0 35 ............................ GGTCGTTGGCGTGACGGGTATGGTCGCCCGCACTA 1365 28 100.0 33 ............................ GAGCGAGCCAGCCCCACCAAGGAATGTAGATGC 1304 28 100.0 33 ............................ TTCTTCACACCATTCCTCTATTAGATCAGCTTC 1243 28 100.0 33 ............................ GGTCGTTGGCGTGACGGATATCGCAAAAATTGA 1182 28 100.0 33 ............................ CCATTGGGATTTCGACTGGCTCGATCGCATCAT 1121 28 100.0 33 ............................ GCTTAGAGCCGGATATTGTTCGCGTCGGAATGT 1060 28 100.0 33 ............................ GGACTGGGATCCCGCGTCAAACGGTATCTTCCC 999 28 100.0 33 ............................ GGCACTCCAATGAATGAGACCGGCATCAGCATC 938 28 92.9 31 .C...............A.......... CCCTGTACCAGTTCACGATTGATACCGAATC 879 28 96.4 33 ..............T............. CTTGGAAGCGGGTGCGTGATGGCCGGCAGTCAA 818 28 92.9 0 ..........T..G.............. | ========== ====== ====== ====== ============================ =================================== ================== 17 28 99.0 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : CGAATGCGCGACATGATGCAGGACGGCAGACTGCTGGAACGTTGCGTACATGATGTTTCCACTCTCCTCTCGGAGGAGCCCGATAACGAGGACAATTGTTCCGTCTGGACTGGCGGGCAACGATACGGGAAAGCCGGTCAATCGTGGGCACCGTCGTGATACGACTCGAAAGCGCTCCACAAGGACTGCGCGGACACCTATCCCTATGGATGGTGGAAATCAGCAGCGGCGTATACGTCGGAGACCTCAACACCCGGATACTTACGCGACTCTGGCAACGAGTCCTCTCGGAACTCGGTACGGGCAGAGCGACGATGGCATGGCATTCCCAGCATCAGCTACATGTCAGCAGCCAAAACGGAAAGAAGACGATAACCGCTTTCGACGGAACCATCCTAATGTCCAGACCGCCTAAAGCCAAAGACAATACGGCCTGAAAACAGGTACGCAATTTGCATAAACAGCCCTCGCATGGCATTGAAAACGTTGAAAACTAAACT # Right flank : AAAGTCAAGCGAAATGCGAAACACGGCGTGTCACTTACCCCGCGCATGCGGGGGGGGTGGTTTCTTAAAATGTTTTCCCATTTGCCTGTTATACTGAATACGTTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAGCCAGTGCCACGAAAATCCCTGCCACCTCCATAGACCGGCACTAATTGGAGTGGGGGGCAAAAATGAATCATCCAGACCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCACTCCAGCCGACCTACTCAGCTTCTACAAGCATGAGTATTACACGGAAGCCCTGAAACATTGGACGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 6104-5520 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOAU010000016.1 Bifidobacterium longum strain MSK.5.15 NODE_16_length_57171_cov_390.655, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 6103 28 100.0 33 ............................ AGTTGGTGCAGGTCAGCTAGTTTTAAGAGCATC 6042 28 100.0 33 ............................ GTACCGTCGCCCCGTCCTGGTGAACGGGGTCGA 5981 28 100.0 33 ............................ GGGTTCGAACATTGTCCGGTATCTGTCGGCCGA 5920 28 100.0 33 ............................ GAAGAGTCCCGACCTTGGAGACGGTCTTGCAAG 5859 28 96.4 33 ..............T............. GTTGAGGATGACGGTGCCGTCCGGACGCGTCAA 5798 28 100.0 33 ............................ TAAACCAAGACGATGGAATCACCGACTTGGAAA 5737 28 100.0 33 ............................ TTCATCAGGAAAAACGACACCAAAGCCAAAGCA 5676 28 100.0 39 ............................ TAAACCTCGATAGAGCGATTGCGGTATATGACCTACCCC 5609 28 92.9 34 .......T.................A.. GCGGGGCGACATGCCGTAGAGCCAACGGAAAGAC 5547 28 89.3 0 ....G.........T..........A.. | ========== ====== ====== ====== ============================ ======================================= ================== 10 28 97.9 34 ACCTACCCCGCACACGCGGGGATAAGCC # Left flank : CGGATCCGAAAGCATCCAAATGGTCGTTGAACGGCATGAAATACCGCGGTTTCAGCAAACCAACCCTCATGGAACAGGCATCATGGTACGCATTCGGCCTATACGCCTACCATCAGCAAGGCAACCAGTGCAAACCCATGTACGTGGAGGGTGAACACTTCAACACGGCTTTACGCACGTTGGCCGATACCGGCGAAGACGTTGACGAGCTCTACAGGAAAATGATGAACGCGCGAAACATGCAGGAGGCCGCACCGTTCTGTCTACGTATAATCCGACTGTTTAACGAGTATGACATTCCATTGGATCACGCCCTGCTGGCATTGGATCTGGCGAGACTCAGCAAACCGGACTCGGCAAACACAGTGCGGCGCGACTGGGGCCGACTGCTCAACTGATTGTCCGCCGGCCTGCGATCAATGGACAATCAACTCAGGAAACAGGTATGCAATTTGCATAGACGGCTCACGCATGACCTCAAAAACGTTGAAAACTAAACT # Right flank : CCTGTGAGCCACTTTTATTGACATCTGACTTTTCTCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAACCAATGACCAACATCATCGAAAAACCCAAGACCAACACACTCATCGAAGAATACCGCCAACAGGCACTGGCATACGGGCACGAAAAAGCAATCCGCACCTTCGCCACCCCCATGCTCCAAGCATGGGAGAAAGCCTGCGAAGGATACGCCGACGAAGACACGGAACTCGAAGGGTTCGCGGACCTCATGTCCGAAGTATTCAACGTCAGGGATGCGGCAATCGCCGCCGCCATCAACCCACGATTCAAGATCGGGACCATCATCAATCTCGCGGCGAAAGCCCACACGCCATACTATAAGAGGCTTCTTTCCAAAACACTTGCCGACGGGTTCACCAACCCCGACATCAAACCCGACCACAACCGGCTACACAATGCCATCACAACCGCATGCGGTCTCACCGACCTTGCCTCGGAGAAGAAGTA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTACCCCGCACACGCGGGGATAAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //