Array 1 40624-49649 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPIW01000043.1 Runella aurantiaca strain YX9 Contig43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 40624 37 100.0 37 ..................................... GCCATTTTTGCAGGTAGCCGCAATCGTTGGATAACGC 40698 37 100.0 36 ..................................... CGTTCTGATGGATAGCTAACCAATACAATCTATCCT 40771 37 100.0 35 ..................................... TACCTGTTGGTCAGCGACTTGAAGCGTATCAACTC 40843 37 100.0 37 ..................................... TAATTTCCTTAGCCCTTCTAAACTAACGTCAACATCT 40917 37 100.0 36 ..................................... AGTTCTCCAGGCACTTTGTCATTGTTAATTTTTCGG 40990 37 100.0 37 ..................................... GCCGCAATAATTCAGCCTACGAAAAGCGGAGCGCCTT 41064 37 100.0 37 ..................................... CGAATTACTTGCATCACAGGGGCGACAAGAAATGAAC 41138 37 100.0 39 ..................................... CGTTCAGCTTCTACTTGTGCAGCCTTAGCGCGCTCAATC 41214 37 100.0 39 ..................................... ATAGCTTGCAATAATGTAATAGTGATTATCCCCAACCCA 41290 37 100.0 37 ..................................... TGCTAATCTGCACTTTGTGAGTACTGGGAGTTGCCGC 41364 37 100.0 38 ..................................... ACGATGCTGAGCCGCTCACTGATGCGGTTTTGAGCGAT 41439 37 100.0 37 ..................................... TACATCTGCTCCACGCTTCTGATGAAGTCTTCGTAAT 41513 37 100.0 36 ..................................... TGCAATTTCATCACTTAACAATTTCCTAAACATCTT 41586 37 100.0 38 ..................................... ATACTAACGTCGCTACTGATACCCGTTATTTGCAGAAT 41661 37 100.0 35 ..................................... CGGAACTCCGTTGCAATCCCCTCTACATTGTTCGG 41733 37 100.0 36 ..................................... CCCCTATAATTGCGTTTGCTGATAATCCTTGTGCTA 41806 37 100.0 36 ..................................... CTACTTCCTTAATATCCTTCACATCCCACCCAACCG 41879 37 100.0 36 ..................................... TCATCTATGGCAAAAAAGAAGGCATGGGCTGGCTGG 41952 37 100.0 36 ..................................... CGATTTGCGAAAGTGAAAGTAAGGCATGGGAGTTGA 42025 37 100.0 35 ..................................... TTGGCTTAGTAAAGAAGATTGACGGAGCATGGATG 42097 37 100.0 36 ..................................... GCACAGTGTCAACGCCCTCTTGCTCGCATAGGTAAT 42170 37 100.0 40 ..................................... GCCTCTCTGAGTTCGTAAGCGTGGAGATAATCTAAGACCT 42247 37 100.0 37 ..................................... CATCCCACCCAAACGGCAGGTGGTACAGGCTAAAGTA 42321 37 100.0 37 ..................................... GACGTTTCGTTTGGCTGATAGCTAGTCAGGACGAAAG 42395 37 100.0 37 ..................................... TTTTAATGAACAATCCGACTTTACGTGACATGAAAAC 42469 37 100.0 35 ..................................... TCACCAGAAACTACATTTCCCACCTTACAGAGCTT 42541 37 100.0 38 ..................................... CCATCAATGCGTGTAAGCAGGACATTGAGCGCACATTT 42616 37 100.0 37 ..................................... GAACGGGAACGCCTTATTAGGTTTGCTTTTTCGTTGC 42690 37 100.0 37 ..................................... GGGAAAATCTCACCGAACGTTTGAGTAAGGAGTTGAA 42764 37 100.0 38 ..................................... GCGTGTGTTTGCATCATTTGGCAATGTTTGGCGGTGAT 42839 37 100.0 39 ..................................... AGGTCAGGTGTACGCATAAACGCCCCCGCAACCATGCGA 42915 37 100.0 36 ..................................... CACGTAACCCTCTAATTCGGCAATAACATTATCAAT 42988 37 100.0 36 ..................................... AAATTGGTGACGCAAGCGGATCAACAACACAAAGGG 43061 37 100.0 39 ..................................... CAAACGTGACTATTGGGATAGGGTACAGGCCGAAAAACT 43137 37 100.0 36 ..................................... AACAGTACGTAGTCGGTTCCCGTCGCTGATCCTTTA 43210 37 100.0 37 ..................................... CCGGTACGTCTTGCCACAGAAACGATCTTTGACAGTA 43284 37 100.0 36 ..................................... TCACTAATCTGCAAGAAATATTGGACTACTTTTTTG 43357 37 100.0 36 ..................................... ATACGGAGTCAGGAATCGAACCTGCGACCTTGGAGA 43430 37 100.0 35 ..................................... AAAGCCGCTTTTTGCTGTGAATTTTGGGATTGAAA 43502 37 100.0 37 ..................................... CAACATAGACTGCATGGAGTTTTTGAAGCAATGTCCT 43576 37 100.0 36 ..................................... GGATTGAACCGCGCGAAGAAATGCCTACACTGTTCG 43649 37 100.0 36 ..................................... ATCGCAATACTATTTTTTGCGGGTGTTGCGGCAACG 43722 37 100.0 36 ..................................... TAACGGGAGGTAAAGAGTATTGCATCGACTGGAATA 43795 37 100.0 36 ..................................... TTTGGCAGTCCCCAAACGTCACCTTCAACAGCGTAT 43868 37 100.0 36 ..................................... TGTGGCAGGTGGAGCTAAACAACCGCATGGGATGGT 43941 37 100.0 36 ..................................... TGGGCCAGATCAGCGTGGAGCCATCGGCGGCTGGTA 44014 37 100.0 39 ..................................... ATCTATAAACTAATTATATCCGTGAAAAAAACAGACTTT 44090 37 100.0 38 ..................................... GTTTCCGAAATTCTTGCCTTCGTTTTCGGTGCCAATAT 44165 37 100.0 36 ..................................... AGCACTTCTTATGATACGTATTACACCTTAGACGGA 44238 37 100.0 37 ..................................... AAAACTCAATACCATGAAATTTAAAAATCAAGATTTT 44312 37 100.0 37 ..................................... GCATACCTAGCCAATTATCGGCGGGTACTTACTCGCT 44386 37 100.0 39 ..................................... GGCAGGGGAAGGGATTCCCTGTTACGGTGCAAAACACCT 44462 37 100.0 36 ..................................... CCGACAAAAAGAAGTTTTTTCGACTATATCCAGATA 44535 37 100.0 37 ..................................... TCTGGGAAAACGTTAAGGGACTCATCACCAGGACGCA 44609 37 100.0 38 ..................................... AAAAAAAATGCAGACGACCAAAACACAACCCCAGCCAA 44684 37 100.0 36 ..................................... TTCCAATGAAAGCAATCACCTTTTCCCGCCACTTCA 44757 37 100.0 36 ..................................... CGGCCATTCATGCCCAACAGTACCAAGATTATTTGA 44830 37 100.0 37 ..................................... GATTTTTGATTTGATGAAGGAAGTAATTTTAATTCTT 44904 37 100.0 37 ..................................... AACGTTTTGGTGGCATTAGTTACCGTATGGGTACAGT 44978 37 100.0 41 ..................................... ATCTTGTCTAAGTGTAGACTCAAAAACCAAGCAGCCGAAAG 45056 37 100.0 37 ..................................... AGAATCCATACACCCACTACGGCAAACGCAATGCCAA 45130 37 100.0 36 ..................................... GAAGACTATAATGCAGATGAAATACTCGAAGAAGCC 45203 37 100.0 37 ..................................... TTATTGTTGGCCGTTAGGTTACTGTTTTTGCAAGTCT 45277 37 100.0 36 ..................................... ATATCTTCAATCTCTTTCTCATTGGCTTCTATTTTT 45350 37 100.0 35 ..................................... ATATCTTAAAGTCCCATTCACTCAAGCCTATAAGT 45422 37 100.0 37 ..................................... AGTGCAGAAGGTTGACGTAATCGTTTTCAAATATTGG 45496 37 100.0 36 ..................................... CCGAAGGAGACAACGAACATACGCTATCAACGGCGG 45569 37 100.0 35 ..................................... TCAGTACCATCCAAACCGATCAGCCAACTGAAACC 45641 37 100.0 40 ..................................... AAACAGCTTGAGTTGATTGTCTTCCGAAAAAAGCGGCAAA 45718 37 100.0 37 ..................................... ACCTCACCAAACGAGTCGATACCAAGTATGACCATTT 45792 37 100.0 36 ..................................... GATCCGATAAAAGAAAAGGGTTGATTTTCAGGCAAT 45865 37 100.0 36 ..................................... TTGTTGGGTGTCGGGTGCATCGGGGTTGGGTGGGGT 45938 37 100.0 37 ..................................... ATTCTTCGCTGAAAAGTTGTATAAGATATTGTGCTAT 46012 37 100.0 38 ..................................... AATCTACTTGCGCTGAACTATGCGGGGTATTTGTATTT 46087 37 100.0 35 ..................................... ACGAACAGTGAAGGTACTTGGATTGAAGCGCAGCA 46159 37 97.3 37 .....................G............... TTGAACTCGACGTTATCCAGCTTTCGGATTTCGCTGG 46233 37 97.3 39 .....................G............... TTTAGCCTTTTGATAATCGTCGTAAACATCGCCCGCTAA 46309 37 97.3 37 .....................G............... TCGCCCACTACGAAATAGTAGATTGGAGATACGGCAA 46383 37 97.3 37 .....................G............... TATTTGCCTGCATACTTGCCCGGAAGCCGGCAAAAGT 46457 37 97.3 37 .....................G............... TTGAACTCGACGTTATCCAGCTTTCGGATTTCGCTGG 46531 37 97.3 39 .....................G............... TTTAGCCTTTTGATAATCGTCGTAAACATCGCCCGCTAA 46607 37 97.3 37 .....................G............... TCGCCCACTACGAAATAGTAGATTGGAGATACGGCAA 46681 37 97.3 38 .....................G............... TTGTAATGCTTCGGCTTCTGCTTCGTAGCCAAAAAGGG 46756 37 97.3 35 .....................G............... AAAACCATGTTCACAAAAAAACCACAGGTAGCAGG 46828 37 97.3 38 .....................G............... CCGTTTGTCCCCTTTACAACCCAAAAGGGGTATCCTTT 46903 37 97.3 35 .....................G............... ACGAACAGTGAAGGTACTTGGATTGAAGCGCAGCA 46975 37 97.3 35 .....................G............... AATTTCAATAAAATGCCACAAGTCCAGACGGTTAC 47047 37 97.3 36 .....................G............... TCAAAAGCGGCCAGGTTTGCGTTGTAAATCGCCCTT 47120 37 97.3 35 .....................G............... AACAACAGTGAAGGCACTTGGATTGAAGCGCAGCA 47192 37 97.3 37 .....................G............... AGTTGTTCCCGATCCTTCTTGCTCAAACGCCGAAATA 47266 37 97.3 37 .....................G............... CAACAATATAAGCGAAGTTGAAAACTAGGGGTATCCC 47340 37 97.3 35 .....................G............... TTCGTTGCGTGGTCAAGGGATCAACACAATTGATT 47412 37 97.3 37 .....................G............... TCAAATCAAAAGGTCGCAATACTTAAAGCCGACACCA 47486 37 97.3 36 .....................G............... TTTGGCTCAGACATAGAATTTGAATTTGATGTAATA 47559 37 97.3 36 .....................G............... CTCAGTGAACTCATCAATGGAACGCCAGACATTGAC 47632 37 97.3 37 .....................G............... ACAATTGCAAAAGCTACAAAACACCCGAACACCGCAT 47706 37 97.3 36 .....................G............... CATCCTGTCTGCCTGAATACTGCGTAGAAGTGAGCC 47779 37 97.3 36 .....................G............... CGGGGTCTTACGTTTAAAAACTGAGCAACATGACAA 47852 37 97.3 35 .....................G............... TACACTTCGGCTACACTTTTGTAAGCCAAACTAGA 47924 37 97.3 36 .....................G............... ACGCCATGGCCGCTGATAAGTCGGTCAAGGACGGGA 47997 37 97.3 36 .....................G............... TAATTTCTATTTTACCAAGATTATGATTACTTTAAA 48070 37 97.3 36 .....................G............... TAAAAGATAGTGACGATTTGCCTTTTTCGGAACAAT 48143 37 97.3 37 .....................G............... CACGTACCGTATTCCCAACTACTGAGCCGGCCGTTAA 48217 37 97.3 36 .....................G............... TTTATCGGCCTTATGCCACTACTTTTTTGGCACTCT 48290 37 97.3 36 .....................G............... CAAAAAAGCCTACTCAGAGCAAAAAGCAATTGTTGA 48363 37 97.3 35 .....................G............... GATGTTACGTCAACTACCAAAGATTCACCATTCAC 48435 37 97.3 40 .....................G............... TTAGTATTATATTTGTTCATCCAATAAGGATAACGGCAGA 48512 37 97.3 36 .....................G............... GAGTACCTCGGAGCGTACTCTCCCAATACCCCAAAA 48585 37 97.3 35 .....................G............... CGCCTGACGGTCTTTGACATGGCAGTTAATGCAGG 48657 37 97.3 37 ....................................T GCTTTAGGGACTACCTTATTAAGACCTTGAAAAACAG 48731 37 97.3 36 ....................................T TCTTTCATTGTCATTCACTTCTCCAAAAATACGATT 48804 37 97.3 37 ....................................T CCAATTAGCGACTTAGGCGAATCTCTAAAGAACGACT 48878 37 97.3 37 ....................................T GAATGTCTATATAATTGTTGCCAGTTGCCACAAAAGA 48952 37 97.3 35 ....................................T AGAAATCAAAAGAGCGGTCTGTTCAAACGAGTTTA 49024 37 97.3 36 ....................................T AAGCCCTAGATTGGTACTCTCCAGTGCGATGATGCG 49097 37 100.0 37 ..................................... AGATTGAGCGTAGCTTTCCACTTCGCCATTGAGCGCA 49171 37 100.0 36 ..................................... TTCTTTTTCTTCTCTCTGCAATTGTTCTAATGTGAC 49244 37 100.0 39 ..................................... GGAAACTTGAAAAAGTAGATGAAATGATACTCATTTTCT 49320 37 100.0 36 ..................................... TTTGTCTAAATTGTGAAAGGCTTAGGTAGCTCCAAA 49393 37 100.0 37 ..................................... GGGGTAATCACTGGAGACTCAAAGCCAGTTGCACCAG 49467 37 100.0 35 ..................................... GGATGCCAACAATGTATACCATCCCTGGAATAAAT 49539 37 91.9 37 ........................A..A.....G... TTATCACCAGACGTTTTTGTCATAATTTTTCGTCAAA 49613 36 83.8 0 T...........A..-..TT.G............... | T [49622] ========== ====== ====== ====== ===================================== ========================================= ================== 123 37 98.9 37 CTTTCAGAGCACTTTCCAGCAAAATAAGGATTGAAAC # Left flank : TTATAAATTTGCCGAATACAAAGACCGGGTATATGAGACCTATCGCACGCAATTGTACTGTTATGCGTGGTTAATTGAGGAGAATTTCGGCAAGAAAGTGGAAAAAGGCTTTTTGGTCTACACCCGAAGTCGGAATAAACTGATTGAAGTACCAATCACAGACGACAACAAGCAGGAAGTAAAAGACGCGGCCAAGGCGATTGGACACATCATTGAGAATAATTTTTTTCCAAAAGCGACAAAATATAAAGCGCGTTGTGTAGGCTGTACCTACCGAAATATGTGTATTCGGTAAGAGATCCAGAAAATTTCCGAGGTTCAATTTATTTTCAATTGCAAAAAAACAGGGATTAATTAATTTATAATGAGCAGGTTATGATTACGGAAAGAGACAAAAAATGCCGCTCAAAAAGGTTCTTTGACGTATTGTTTCACAAAATAAGAAGAGGAGCAAAATACAGTTATTATATTTGTAATCAAGTCGTTAGCGCACCTGACGG # Right flank : TCCTTCATTATGAAGTAGTCCGCCACCAGAGCTTTCAGTTAACAAATACTACCGAAAGCCCCAAGAATTTGAAATAGTATGAGTACCCTTCGTCGTTGGCGACAAACATTCTAATTGAAATGAGGTCTAAAAGGCCAATGGAAAAATATAAATCACTAAACGAATAAGACAAATGGTACTGTACCCGAAGATAATTGCTATGTAAAACAAAAAGGCTGAATTTTGAAGCGACCAAGCATCAAACCAGCCTTTAAGAATGAAAAAAATCATTAGGGACGAAGTTATTAAATTGCTTCAAAAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGAGCACTTTCCAGCAAAATAAGGATTGAAAC # Alternate repeat : CTTTCAGAGCACTTTCCAGCAGAATAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //