Array 1 71727-71258 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSWN01000019.1 Corynebacterium ulcerans strain 4940 contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 71726 36 100.0 39 .................................... CTTCAACCGTGCCATGGGCCCCACCGGATGGACCCGGAA 71651 36 100.0 35 .................................... CCTTGAGCTTCGCAATCGCAGCATCCACAATACGG 71580 36 100.0 33 .................................... GTCGAAGTCCGCACCAATCGCGCGCTTAATCAA 71511 36 100.0 38 .................................... ATATTTGCGCGGCGTGCAGCAGCACGAATCTTCGCTAG 71437 36 100.0 37 .................................... ATGGAAGAGATCGCTAGCGGTTCGGCTTATGAGGGCA 71364 36 100.0 35 .................................... CCGGCGTTGGGGTTCTCACTGATGAGCATGGAGGC 71293 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 100.0 36 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGTGAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCATTATTAGCGCTGAGGAAGATTCCGTTTTATATTGCGACCTTGGCCTGCTATCGAAAGTAGACACCACGTTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTATGGTTTTCATAGAGCAACAACAATCACCCTTTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGTTAAGTCAGTTAAAATGAGGGGGCT # Right flank : GACGCTGTAGGGCTGCGCGGTCCTCATCGGACGCGCTGGTGCTCGAGATCTGCGCAATGGCGCGGGCTGTTGCTAAGCTCATAGCCGTGCTTTCTCCCCAGATGGTACTGGGTGATAAGCGAGCGTCAGGTAGTTGGAGCTGCCTGGCGCTCATTCATTTTTCAAATGTCACCACACACCCCTACGGAGCATGTACGCACTTCGGATACACGACTCACATTTGCGTTGTTCAACGCCACAGAACGATCTATCCAGTCCATCGTCTAGGGCCAGCAGCTAGTACTGCTTTATTTCCGTAGACTGCCCAATATGAAAGAGAAAAAACTATCGTCCTTAGTATTCGGAAACGTTATCCTTGAATCTCAGATTTTGGGGACAACCATCCGAATATACGCTGATGACATGCGGTCTTATTCTTTTCGACCTAGCCCTTATGCCTCCCTCTCCGTCCCCTTAAACGAGTTAAAAGGGCAGCTTCAGCCTGACCACGCCGAAGCTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 4121-5370 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSWN01000002.1 Corynebacterium ulcerans strain 4940 contig_10, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4121 29 96.6 32 T............................ CCTATGTATCGACTCATGCTAAGCGTGGGGAT 4182 29 100.0 32 ............................. ACACCCCATCGCGGTCGTAAGGCCCGCTACGA 4243 29 100.0 32 ............................. CGGCCGCGCACATCAGCCAACGCCGCTTTGCC 4304 29 100.0 32 ............................. GTAGGAGGCCCGCATACGCTTCCGATACTCAG 4365 29 100.0 32 ............................. GCGCATTCACCTCCACCGGCGATCCAATCAAA 4426 29 100.0 32 ............................. TGATCAACATCAGCCGTCGATGTCACCACCAT 4487 29 100.0 32 ............................. GGATACCGGGATCACATTCCGACGCACGCCCG 4548 29 100.0 32 ............................. AGGGTGAAGCCATTGAGCTCGAATGGCGAGCT 4609 29 100.0 32 ............................. TAAACGGGTTCGCTACGTGGAGCACTCACAAA 4670 29 100.0 32 ............................. CCTTTTGGTGTTACGTCTGTTCGATAAGACAC 4731 29 100.0 32 ............................. GATGATCAGGAACGTCGACAAGCCCTTTACGA 4792 29 100.0 32 ............................. AATTGATGGTCATTTTCCAAACCTTTCCGGTC 4853 29 100.0 32 ............................. ACGATAATTCGGGCTATTTCTGCATCGGTGAG 4914 29 100.0 33 ............................. CACGGGTAAAACTCACCCTGCGCACCCTTAATG 4976 29 96.6 32 A............................ GCGTCAAACGCGGACGTTGCGATCAGCAGCGT 5037 29 100.0 32 ............................. CCGATCAGGAAATTATTGAGCACTTCACCAAC 5098 29 96.6 32 A............................ TCAAAAACTGCAAGGCAGAAGAAACTTTATCC 5159 29 100.0 32 ............................. CTAAGGCAAAATATTGTGTTTTTGCGTGGGAA 5220 29 100.0 32 ............................. AACGATAAGATTCGGATTTTTCGGCATCAGCT 5281 29 100.0 32 ............................. TCCGCAGATTTCATCAATAAGAGAATTATCTA 5342 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.5 32 GGAACTACCTCCGCATACGCGGAGAAAAG # Left flank : TTTTGTGATCCGCACACCGGGCTTCATTTTGATAATGAGGTTCCCGTCTTCTGGGGACCTCGGTACGTACATAAACCCGCCTGTATTCGACAAACCTTTTACAGGTGGATAGGACTCGTCGTAGTCGATAACTTGATTGAATCGAACAAGTTTTCGATACATGCCGAGCAGTTTAACATAACTTGAACCACGTACCCCCTCTTGTCCCCGTTCCATATAGCGGGCGTGGATTCGTAGCGTTTTGTAGATTGTGTTATCGCGGTGCTTATCTTTAACTTTTGGCCAAGGTATGTCATCTTTGATGTATTCCATTTCCCTAGCTTCATGCCTTCCTCTTTTTGCAAGAGTGAAGATGTATTGACGGGTAACCCCGTATTCCCTAGCAATCTGGGATTGGGTCATACCTTCACCTAAAAGCTGCATAACCCGTTCTGGCGTGATAGACATTTATACCTCCGTAGTGGTGGACACAAACTATATATCTAGCAAGTGTCAAGCTA # Right flank : GACTAACTTACCTGCGCGTTTACTCACCAAAGAAGTCAAAAACAGTCCAAACTGCGTCTGGAATCAGCACATTAACTCCATACAATCGGTGCGAAAACTAGCCTTCCTTATTAGACCATGACAAAAGCGGGAAGATCTACTAACCACCCTCGCAATATCCAGGAGAAGACATAAAATCGCAAAATCAAAAGATAAGATAATTTGCCCCATAGGATGAAGCGCAAGTGTGCATTCGTTGATGCGGAGCCCGTCATTCCTAAATAGGGGAGCACTGGGAGGATTTGAAAGGCTTCGTGCGACAATAGATTGGTGATTGAACTGGACCAGCCTCAAGTAACTGTTAGCCTTCGCCCAGAGCTGACCCCGGCTGTTATTACTATTTCAGGTCAGGATCGACAGGGAGTGTCGGCAGCAGCTTTCCGTGTGTTAGCTGCCAACGGTGTACAGATCCTTGATGTTGAACAGTCGCAGTTTCGAGGGTTTCTGGGGTTGGCGGTGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCATACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //