Array 1 246827-248113 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015572.1 Pasteurella multocida strain USDA-ARS-USMARC-60381 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 246827 28 100.0 32 ............................ AAGCTAATGATGTAATGGGTAATGTTGGGCAA 246887 28 100.0 32 ............................ CTCAAGAACACGGTCACAATTACACACAAACC 246947 28 100.0 32 ............................ TAACGCTAATTTGGCATCTCCGGCTTGTTCTG 247007 28 100.0 32 ............................ GCTGTATAAGCGGTTAAAAAAGTTATATTTTT 247067 28 100.0 32 ............................ ATTATTTCTTTCAGGTGTTGGGGGGATTGAAT 247127 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 247187 28 100.0 32 ............................ GCTTGAAAGTGTTGGCTTGAAACTTTCGGGGC 247247 28 100.0 32 ............................ TTGATCGTTTGCGCGAAATACCAATTTTTTTA 247307 28 100.0 32 ............................ AACAGCTCTTACACCAGCGCAAAAATTTGCGA 247367 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 247427 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 247487 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 247547 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 247607 28 100.0 32 ............................ ATTGCCTTTCGTTGGGCAAAAAAGAATGTTTA 247667 28 100.0 32 ............................ ACCAATAGTCGTCGCGCTCAAAATCAGGTAAA 247727 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 247787 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 247847 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 247907 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 247967 28 96.4 32 .................T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 248027 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 248087 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.7 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1523972-1522923 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015572.1 Pasteurella multocida strain USDA-ARS-USMARC-60381 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1523971 28 100.0 32 ............................ ACAACAAAAAACTTGTGAACGTTTAGCCGCAA 1523911 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 1523851 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 1523791 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 1523730 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 1523670 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 1523610 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 1523550 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 1523490 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 1523430 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 1523370 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 1523310 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 1523250 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1523190 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1523130 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1523070 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1523010 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 1522950 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //