Array 1 1055-2477 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQLV01000019.1 Neisseria meningitidis strain M21319 M21319_HUY2364A16_cleaned_ctg_27173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1055 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 1121 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 1187 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 1253 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 1319 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 1385 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGTCGGAAAAATCC 1451 36 100.0 30 .................................... CGCCCCCATGCTGATGGTGCGCCTCGCCGA 1517 36 100.0 30 .................................... ACATCTTCGCCGACATAACCTGCTTCGGTC 1583 36 100.0 30 .................................... CATCTGCCACGGCATTCCCGACGACAAGCC 1649 36 100.0 30 .................................... GACAATCATACCCTTGTGTTGCGGTCTTTT 1715 36 100.0 30 .................................... ATGAGCATCACAATGGCGTCGCCGTCGCAG 1781 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1847 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 1913 36 100.0 31 .................................... CAAAAACTTTATTAGGGGGGTCGAAAAATAC 1980 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 2046 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 2112 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 2178 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 2244 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 2310 36 100.0 30 .................................... ATAAAAAATAAAAAAAACCAAAAATAATAG 2376 36 100.0 30 .................................... CAATCAGATCGGCAAACCCTTCGGGAAACA 2442 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCACCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //