Array 1 111858-113963 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUBJ01000006.1 Xenorhabdus vietnamensis strain DSM 22392 Xvie_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111858 29 96.6 32 ............................T GCCGCTCGTCAGTAAACCCGCTTCCTTTGCCT 111919 29 100.0 32 ............................. GTAAAATACAAGACAAAAACAGGCGTAATCAA 111980 29 96.6 32 ............................T ATGCATTAAAACCCCACAAGAAGCCTGTCCGT 112041 29 100.0 32 ............................. GACAATGTGCAACTGAATTTCAGTGAATCCTG 112102 29 100.0 32 ............................. ATCTTATGGAATTCGTCCAAAATAGTTGAACA 112163 29 100.0 32 ............................. GACAATGTGCAACTGAATTTCAGTGAATCCTG 112224 29 100.0 32 ............................. ATCTTATGGAATTCGTCCAAAATAGTTGAACA 112285 29 100.0 32 ............................. GACAATGTGCAACTGAATTTCAGTGAATCCTG 112346 29 100.0 32 ............................. ATCTTATGGAATTCGTCCAAAATAGTTGAACA 112407 29 100.0 32 ............................. GACAATGTGCAACTGAATTTCAGTGAATCCTG 112468 29 100.0 32 ............................. ATCTTATGGAATTCGTCCAAAATAGTTGAACA 112529 29 100.0 32 ............................. TGGATAAATAATCAGCTATCCTGAGATAGATG 112590 29 100.0 32 ............................. GGTATTCTGAGGTGCTATCTGTGGGACGTGTT 112651 29 100.0 32 ............................. CCACCAGAGAAGATGGCTGGTTGGATTCAAGC 112712 29 96.6 33 ............................T GGATGAACCCATCGGGATTTATACCGACATGAA 112774 29 100.0 32 ............................. AAAATATTAGGATGGGAAATAAACGATGAGTG 112835 29 100.0 32 ............................. CAATTTACATCATGAGTAAAAAAGAAGTGCGC 112896 29 100.0 32 ............................. GTCTGCGCGGCACTGGACGAATTTCTGATTGA 112957 29 100.0 32 ............................. GAACTGAACCAGAAACTGTTCTCAGTGATGGG 113018 29 100.0 32 ............................. GTGCGGCCTATATTAAAATTTATGACATAGTT 113079 29 100.0 32 ............................. GAAGCTTTTCTCGGTACGGTCGTGATTGACGG 113140 29 100.0 33 ............................. TTTCACAATCTGGTGACTCTGCAATGTCATGCC 113202 29 100.0 32 ............................. GTGCTATCAAAATCAAAGGATGGCAAAAAATG 113263 29 100.0 32 ............................. AAACCGGAGGAACGCCGGAACAGTTTGCAGAA 113324 29 100.0 32 ............................. CTAACCGGATTGCCTCCAATGCAAAATTCCCC 113385 29 100.0 32 ............................. TTGAACCTGTCCGCCTAATATCATGTACTGTG 113446 29 100.0 32 ............................. CCTAGTCATATCCAAATCACTAGCAGTCCATA 113507 29 100.0 32 ............................. AAATTATCAGAAATAAACCATCAAAATCTAAA 113568 29 100.0 33 ............................. TTGAGATTTTTGCGTTCTACTCTTCGTCGATAC 113630 29 100.0 32 ............................. TTATCGCGGTGATAACGACAGCATTGCCAGCA 113691 29 100.0 32 ............................. TCCTTAGTTGTTTTAGATATTAAGTTGGAAAA 113752 29 100.0 32 ............................. AGGTTACAGATAATCCCAATGGATTCATTAAA 113813 29 100.0 32 ............................. TTAATTCGGATAAAATGAAGCAATAACATGAG 113874 29 100.0 32 ............................. GGCTTTACGAAAATATCTTTAGCTTCCCGATG 113935 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.6 32 GTGTTCCCCGTACCTACGGGGATAAACCG # Left flank : GCTTACCCAGCGGTTCAACCAGCGCGGTAAAACGGGCAAGCTCATACCGAATTTGCGGCCCGAGCAAAATCACATCGGCTTCATGGATACATCCTTCCAATTCCATAGCTGGAACAGCCCTGATCGCCACTTCCAGCCCCTGTTTTTCAGCTTCCGACTGCATACGTTGCACCAACATGCTGGTGGACATCCCTGCCGCACAACACAATAAAATTGTTTTCATAGTTTTGTTCTCTTTGTTGTTATCTCGTTATTATTTCTCTTAAATAAATTATGAGAGCGCTCTCATTTAGGTTAAGGTAACAGGTTATTTTGCGATTGCTGCGATGGGAGTCTCATAATTTAATAAGCCATGATGAAGTAAGTAGATGAAACGCTCGGTAATACAAATAATAAGTAAAGAAAAATAAAAGGAAGAATTTGACTGATTTATAAGCGAAAAAAATGGTAGAATTTTTCCGCCCTAAAAAATTCTTACAAAACAGCTGGATAAAATTAGA # Right flank : ACAAAAAGCTGGCCGCCAAACTATTTGTTGTGGAACCAGCTTGCTTAAGATTAAAACTATCAGGATTCAGATGAGAATGCTGATGCAGACGCAGATACTGATGCCGAGTACAGGTAAGCAGCCCATTCACCATATTGACAAACAAATATAGCAGCAGCTTTTGATGATAATGGATCTGCTAATCTCTTAACTTTATCTCTTATCTGTGCCGCAGTATTTAACGAGGTTCCTACATAAGTTCCTGTAGGTAAAGCCATTATCTGACCATCGGAAGATCTGATGTTTCTATTAAAATCAATTAGCTTCATTGATTCATGAAGTAACTCGTATTCTCTTAAGCCTGCCCCAAAAATTTCAACACGAACCATGTAAGTAGCCATTTTTTAGCCCTCTCAATATTATTTAAGAAAAAACCAAACCATCTACTTTCTTGATCACAATAAGTTATAGCCACATCCCATATTTCTGAGGGGATTGTGGTTCGTTGGTGAATGTAGCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACCTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125067-127170 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUBJ01000006.1 Xenorhabdus vietnamensis strain DSM 22392 Xvie_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125067 29 96.6 32 ...........................G. CTCAGTTCCAGTAGTCAGGCATTGTTTTACGA 125128 29 96.6 32 ...........................G. ACTAATTCACCCGCTGCATCATTACTGGCAGG 125189 29 96.6 32 ...........................G. AGCGATAACTTGGTATTACTGATATCGAATCA 125250 29 96.6 32 ...........................G. GCTGCGCATGGCGTGGCTTTTTTTTCGTATTC 125311 29 96.6 32 ...........................G. TTTAATGTATTCACTCCTGATAATAGCATCAC 125372 29 96.6 31 ...........................G. CAGCCGCATATCAGGATGCCACTGACGAGTA 125432 29 100.0 32 ............................. CGCCTAACGCGACGTCTGACGACCCAGATCAA 125493 29 100.0 33 ............................. CGAAAAGGGCAGCACTGGGTGGATGACGAAGGC 125555 29 100.0 32 ............................. TACACATCTACTCTAAAACCTAATACTCAGAT 125616 29 100.0 32 ............................. GGCGGGCGTCAGGCGGCGGCAGCCAGCCGCCA 125677 29 100.0 32 ............................. AGGCGGCGTATCAGGAGGCTGTAGAGGAGCAA 125738 29 100.0 32 ............................. CATCGATTCATTGATAGCCTCTCAACATTTAG 125799 29 100.0 32 ............................. ACCACGAACAATTACGAGCGCTCACACCGGAT 125860 29 100.0 32 ............................. GCTGCTGCAATTACAGCAGATTATCAACAAAA 125921 29 100.0 32 ............................. CTAATTTTAACTGTTTTTTGCTTTATATGTTT 125982 29 100.0 32 ............................. CTGATTTACAGAAAGCACAGTCACAAACAGTC 126043 29 100.0 32 ............................. TTATTACACCAAATGGTGATGCTATGGGGATG 126104 29 100.0 32 ............................. ATAAATATTCTGCCGGTACATCCCCATAAAAT 126165 29 100.0 32 ............................. CGTGGAACCAGAGGGCAAATGACGGAGGGTGG 126226 29 100.0 32 ............................. ATCGTGATGGACTACGAACAACACCGGAAATT 126287 29 100.0 32 ............................. GTGATCGTGAACAATGATGTCGCCTGTGAGGT 126348 29 100.0 32 ............................. ATCAGTACGCCGCGCTTTGTATCAGTTCCTAC 126409 29 100.0 32 ............................. GGCGGTATAGCCTGAATGATTTGCACGCTGCT 126470 29 100.0 32 ............................. GAAGTTCGCTCTTTAACAATATAAACCCCACA 126531 29 100.0 33 ............................. TCGAACACTACCGCAGAACGACAAGTTCCATGC 126593 29 100.0 32 ............................. ATAACTACGCTAAATTAGCGGTTTTCTCAGGT 126654 29 100.0 32 ............................. CTCGACGCCCTCATAATGTATACCTTTCTCAG 126715 29 100.0 32 ............................. AACAGATGATGGTGATGTATTCGACCCGTCAT 126776 29 100.0 32 ............................. GAATAGCAACTAACGCAATGAACCATTTGTAC 126837 29 100.0 32 ............................. GATTAGCGAGCGCCTTGCTGTAGCAGTAGCAA 126898 29 100.0 32 ............................. GGCTTACTGATTTCTAATGGTTTTATTACTCC 126959 29 100.0 32 ............................. ATGCCAAGGTGCGTCTGGAACATCGCGAGGAA 127020 29 100.0 32 ............................. GCCTTTGTCTCTTCCCTATCGATCAGGTCGAA 127081 29 96.6 32 ..G.......................... CTCAGTTCAGCGATTTTTTGCGGACGCTGCCA 127142 29 82.8 0 ..G...........C.........C.T.A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.8 32 GTATTCCCCGTAGGTACGGGGATAAACCG # Left flank : CTTAATTGAAGAAGTCCTTGCCGCAGGCGAAATTTCTCCCCCACCTCCACCTGCCGATGCACAACCTCCCGCCATTCCTGAACCAATATCCATCGGCGATATTGGGCACAGGAGCCAATAAATATGAGTATGACCATTGTTGTAACAGAAGCCGTTCCCCCTCGGTTACGGGGACGTTTGGCCATTTGGTTGCTGGAGATACGGGCAGGCGTTTATGTCGGGGATATCTCCCATAAAATCAGAGAAATGATTTGGGAGCAAATCACGGCGCTTACCGAAGATGGAAATACCGTTATGGCATGGCAAACCAATACCGAATCTGGATTTGATTTTCAGACCTATGGTGAAAACAGAAGGGAACCGATAGATTTTGATGGCCTACGTTTAGTTAAATTTAAACCACTTTCAGAGGATTAGTTTGGAGGAGTTAAAAGGCGATGAAAAATGGTAGAATTTTCCCTGCTAATAAAGTTATTTAAAAACAGATAACTATATTTAGA # Right flank : ATATCGGTCAACAGCGGATAAAATATCAGCAGAATATTCCCTACAAATATATAAACACCCCAAAAATTGTTTAATTATTACACATCACAGTATTTCCGAAAGCTCGATAAATGACTCCAATATGTTGAGTATAAAATACATAAATATAACCACCATTTAAATAAGACATAAATAATCCAAAGTAAGATTACTAATCATCACTGAATGATGATTTATTGTGGAATTAGTCATATATAAATAAGAATAGAAACTTTCCTGTACTATTCTCTTATTTTAAATAACCAAAATAAAAATAAACATTAGGCATAATCACCATGCGAATTAATTATTTTTACTAAGATATTAGGGAGATAAAACCAGCTTTATTTGATAATAAATCGAACGAATCTTCTAAATTATGCGATATTCCATCTACAAGCATAATTCGTTAATGATTGCCAAAAATACCTATGATAATCTACGCCGCTTTCCATCCTGAGTTGTTCATTTGATATACAATT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGTAGGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGTAGGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //