Array 1 402901-399970 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLFZ010000002.1 Clostridium perfringens strain QHY-13 NODE_2_length_432754_cov_187.732509, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================ ================== 402900 30 100.0 34 .............................. AAAGTAGGGGATGACTAATGAGGTTCTTTTTAAA 402836 30 100.0 35 .............................. GCCGTAACCTTACCTTGAGAAGCTAATTTTTTTAC 402771 30 100.0 35 .............................. GATGTTGAGGATAGCTTTAATGGAGAAAAAAGAAG 402706 30 100.0 35 .............................. TTTCTTCAATCCATTCTGCAAATTTTTCATAAAAA 402641 30 100.0 36 .............................. GTTTTAGAAAATTTAAAATTAGCTGGACATAATGTT 402575 30 100.0 36 .............................. ACCTTTAATTCTTTCTCATAATTATTTATTAAATAA 402509 30 100.0 36 .............................. CAAGGATTTGGACAAGTCTTAAGGTGGGAGTTTGAG 402443 30 100.0 35 .............................. ACTTTCCAATGCTCCTGTTAATGTCTTCGCTGGTT 402378 30 100.0 36 .............................. TTTAGTTTATCTTTTTTAATTTTCAATACACTATAT 402312 30 100.0 35 .............................. GAACATCAAGGAAGAATAAACTGGGAACAAGTAAA 402247 30 100.0 36 .............................. GTAGGAATAACACCACTACCACCAACAGGAGGAGAT 402181 30 100.0 36 .............................. ATTCTTGTTTGAACTGATTCAACCATCTTATCTCCA 402115 30 100.0 36 .............................. ACTTAATAATTCTAATGGTGCTTTAGATGAGATGGC 402049 30 100.0 35 .............................. GCTCAAATAAGTTCATTATCCGTAAATAAATTAGA 401984 30 100.0 36 .............................. CTAAATCTCTTAATGATAAACTATGGGAAACTACTA 401918 30 100.0 36 .............................. CTTTTCATCTATTTCCTTAGCCATTCTATTTAGCAC 401852 30 100.0 36 .............................. CCATTTTCTTTAATTGATAATTCTGCTATTAAAGAC 401786 30 100.0 35 .............................. TAAGAATCTTTAAGACGAATAGCAATATGAACATG 401721 30 100.0 36 .............................. AGCTTTGCAATGTTCTTTGTTTTTTGGTAACTTCCT 401655 30 100.0 36 .............................. TACTATAATACATTAAAGTTAAATTACTGTTATTTA 401589 30 100.0 36 .............................. CCTACTAATTCTAAAGTAACATTAGGATTATCTTCT 401523 30 100.0 36 .............................. ATTTTTTTTATAATTATTTGATCACCTACTAATTCT 401457 30 100.0 36 .............................. CTCAAACTCCTTTTATTTTAATTTAGTGGCTATCTC 401391 30 100.0 36 .............................. TTTTTTACAGCTCCTGATTTGTCTAAAAGTGATCCT 401325 30 100.0 36 .............................. TTCTTTAACCAATTATAAATTGCCTGTCTACTTACA 401259 30 100.0 36 .............................. AAACGTTATAATGGATTTAGAAAAATATATTATAGA 401193 30 100.0 36 .............................. GAAAATGGACAATTAACAGTTAGAGCAAAACAAAGT 401127 30 100.0 36 .............................. TCGTTGCTAATCTACCAAAGCTAATTGAAGCAGGGG 401061 30 100.0 34 .............................. TTAACGGTGGTTTGGAAGAAACTTGTGAAATTCT 400997 30 100.0 36 .............................. TTACTAAGTAATACCATATAAATCTAATAAGATTTC 400931 30 100.0 36 .............................. ACAAATTAAAGCAGGTAAAGCTGATATAACTGATTT 400865 30 100.0 37 .............................. GATACATCTTATACAATGCCAGGTAATGAAACATTAA 400798 30 100.0 36 .............................. TTAAAAACTTGTCCTTCTTGAAGCTCTGAAGCTATA 400732 30 100.0 36 .............................. GCAATATTCTTAGCTACTCTTATTAAATCCATTACT 400666 30 100.0 35 .............................. TGTAGAGCTCCGAATTCATCTGCACTTTGAATCTC 400601 30 100.0 35 .............................. GACTTTATTGGCTGGTATAGAATTACCACAGCTAC 400536 30 100.0 36 .............................. TATGAAATATTAACTACCAACTGATTTAATGAGAAG 400470 30 100.0 34 .............................. ATTTGAACTTTTAGCTAAAATTATAAGATTTTTT 400406 30 100.0 36 .............................. TCAAGAACTTTTTGTTTTTCCGGAGTAATAGTAATT 400340 30 100.0 36 .............................. GAGGAAGAGGATAAGAGATCTGGTGAGTCACAGTTA 400274 30 100.0 35 .............................. AAAGATAGAGTTGAGAAGTTAGAAAATGATTATAA 400209 30 100.0 36 .............................. TGAGCTGGGCCAGTTTTAAATGTTATCTCGAATCTG 400143 30 100.0 36 .............................. GAAAAATTTGAATCTACTAAGCAATCTGTTAGCGAC 400077 30 100.0 48 .............................. AAATGGCATTATTACTATATTTATTATATATATATTATATATATATTA 399999 30 93.3 0 ......................G.....G. | ========== ====== ====== ====== ============================== ================================================ ================== 45 30 99.9 36 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : TATAGATATGAAAAGTAAAATGAATTATAATTATGCTTTTGTATTTTATGATGTAAATGAAAAGAGGGTAAATAGAGTGTTTAAAGTTTGTAAGAAGTATTTATCTCATTTTCAGAAATCAGTTTTCAGAGGGGAAATAACTCCTGCTAATCTTATAAATTTAAGAAAGGATTTAAATAAAGTAATAGAAAAAGATGAAGATTTCATATGTATTGTTAAATTATTAAATGGAAATGTATTTGGAGAAGAAGTACTAGGAGTTCAAGAAGTAATTAACGGAGAAACACTTATACTTTAATAATCAATTCAAAATAACATATAATTTTATCAGTGATTTAATTTGGAAAAGTTTTGCGAAACCCTTGAAACAACTAAGTTTTAAACTGATTTTTGATACCCTCTTCAATTCTTAATAAAACACTGGTAAAATTATAGTATAAGTATTGAAATAACTAGATTAAGATATATTTATTAACTTTAAGAATGGCTATTTTACAAGT # Right flank : ATAATTACTTAATTTACCGTAACATAAATTTTATAATTAAGTAGGGGTATAATATGAAAAAACTAGCTTTTGTTATAAAAAATATTTTGAAATTCTGGTGGTGGCAAGATATAGAAAAGTCTAATATTTTTATAAGGCTTATGAATCTTGGGATGGCTTCCTTTTTAAGTTTTTGTCTTTTAGCATGGATGTATGGAGAAAGCTTTAATATTCTATTAAGATTATTTATAAGTATTTACGGTGCTTTATGCTTCATGTCTTTTTGGTCAGTTTCATATTTACTTGATGAAAAGGATAAAGCAAAAGGAAGTACATTTTACATATTTCAAAATATTTCAGTTTTTTGCTCTGTTATTTTATTAATCATTTATATATTAAAAAATTATCATGGAGTTAAAATCTAACAATTTAATCAAAAGCAACATAATATAATTTTAAAAATATAATCTTAAGATCAAAAGTTCATAATATAAGAATAAACTGATAAAATACTATTTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 415094-413102 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLFZ010000002.1 Clostridium perfringens strain QHY-13 NODE_2_length_432754_cov_187.732509, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 415093 30 100.0 36 .............................. CCATCTGTTAAAGTAAATTTATTTTCTACATACAAC 415027 30 100.0 36 .............................. AGAAGATTCACTTAGGGAAATGGTTAGACAATATGC 414961 30 100.0 35 .............................. GAAATTTTAGAGCTTAAAGAAAAATATGAAGAAAG 414896 30 100.0 35 .............................. AAATAAAGATAGAAGAGAAAATATCGTAGCTTTTA 414831 30 100.0 36 .............................. CAAATGAATTCTACTGCTTTTTCATCTCTTATTTGG 414765 30 100.0 35 .............................. TTTAACGCCATTTTATTTCTCCTTTCTAAATAAAA 414700 30 100.0 36 .............................. TAGAATAGAAGATTTAGAAAAGAAAGAAGGAATGTA 414634 30 100.0 35 .............................. GAAGAAGGCGTTCCTATTTTTTGGTTTTCTATCGG 414569 30 100.0 36 .............................. GGTTCTAATCTTCTAAAAGCTTTAGGAGAAATATAA 414503 30 100.0 35 .............................. GACGATTTAATGATGGCTCAAATATTAAGCCAAGT 414438 30 100.0 34 .............................. TGGGTATAAGTTGTAATTCTGGAGCAGCTATTAA 414374 30 100.0 36 .............................. AAATACATATATTACTCTCCTTTCTATTTTGCCCAA 414308 30 100.0 35 .............................. AGAACTTCCGAATCATGAAGAAAAAGTACATGAAC 414243 30 100.0 36 .............................. AATTTTATGGCCAATGAAAATGTCAAAATAGCTAAA 414177 30 100.0 34 .............................. CCTTCTGTTATAAAAACTGTTTTACCTTCTTTAA 414113 30 100.0 35 .............................. TCGTCTATGGGTAAAATAATTCCCACAGCTAAAGC 414048 30 100.0 36 .............................. AGTTAAAAAAGAAGAAGAGTTTAAGTGGCTTAATGA 413982 30 100.0 36 .............................. GCTTCTTTTCTAGCTTTAATGGCATCTTCTTTATTA 413916 30 100.0 35 .............................. AAAACTGTAAAGTTAAAAAACAAATCCAATATAGG 413851 30 100.0 35 .............................. TTCAAGAGACACAGTAGAGCTTGCCAATGCTATTC 413786 30 100.0 36 .............................. ACTTCCAGGAAGGTTATGGAGCTACTTAAGCAATGC 413720 30 100.0 36 .............................. TTAGTTGTAGAAGATAAAACTTTTTATAGAAGTTGC 413654 30 100.0 36 .............................. AGGTTCTAATGGCAAATATACAACTAAGAGATATTT 413588 30 100.0 35 .............................. TAAATATCATTACCATCTTCAAACCAATCTGAAAC 413523 30 100.0 36 .............................. ACATCAAATTTATTATTAATACCTTCTTTAAGACTA 413457 30 100.0 35 .............................. GGAGCAACTGGAGAAGATTTTAAAAAGTTAAAAGC 413392 30 100.0 34 .............................. TTTATTTTCTTACAAGCATCTAAACGCATTTTAT 413328 30 100.0 34 .............................. CAAGAAGATTTAAAAAAATATTCTGATGATGTAG 413264 30 96.7 36 ................A............. AATATGCTTATAGCATTAGGGTATAAGAAAAATGAT 413198 30 96.7 35 ................A............. AAATAACTGCGTAAAATATATATTTTACGAATAAA 413133 30 86.7 0 ....C.........GTA............. | TT [413106] ========== ====== ====== ====== ============================== ==================================== ================== 31 30 99.4 35 ATTGAACCTTAACATGGTATGTATTTAAAT # Left flank : GCAAGTGAACCTAATGTAGATATATTTCCAACAATGTTTTGGATTGCTCTATATACAACATTGCCATTTCAAAGTGTAATAAATCTCTTAATAGGCTATAACATAGAGAGTTTGTCATACTTAATACTTCCAATATATATGATAACATTAAGCTTATTAAGTTATAAGGCACTTAAATTTAAACCCCAAAAGAAAAATAAACAAGATGATTAATTTAAGTTTTATAATAAGAATTTAAAAGTAAAGTGGACTTGTTATCTGTCCATTTTTACTCAATAATTTGGAAATAATATAGCTTTAAAAATAATGTAAATAAATAAAACTTTACCAACCTAAAATCATATAAAATTACCTTTTAGACTTTGAAATAACTAGATTACAAGTCTAATTTATATTAGTGCTTTAAATTAAAGTAAGACACTGGTAAAATAATAAGAGAGACACTGAAATAACTAGCTTAAAGATAAATATAAAAACAGAAAAATGGCTATTTTACAAGC # Right flank : AAGGACTTTAAATATTATATTATTGGAATAGGAATAATATTATTAATGTTTCTAAGCTACTTAAAATACTTCTATTATTAGCCAATATTTTATTAAATAATTAATATTGCAAAAAAATATATATTTATAAAAAAATATTAATTTTCCAAAATTTGCTGATTGGAAATTATAATTATAACTATAATATGTAATATTTTTATAAGATGAAAAGAAAAAATACTTTAAAATAGTAAAATGATTAAAAGATAAATTTTGTAAAAATAACTTTTATTGGTATAATAAAAACATCAAATGTATTTAATTTATATAATAAAAGTTTCAATAACTCGTGGAGTATTTAAAAAATGTCTTTAAAGGATATAATATTTTAACCATAACATTAGATGTACCAAACAAAAGATAAACTAAGATATTTGAGTTTTTAATTAATTATTTAAAATCAATTTTAATAAAAATAAAGTAGAGTTTTTATAAGGAGGTGAGTATAGTGAAAGTTTTTC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGGTATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //