Array 1 403079-403472 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUTU01000002.1 Salmonella enterica strain CFSAN071940 CFSAN071940_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 403079 29 100.0 32 ............................. GTAATTTTACCAAAAATTCTTTCTTTTTCTTC 403140 29 100.0 32 ............................. CCGCCAGTGCCGCCTTTAGAATATCTGTATTA 403201 29 100.0 32 ............................. GACGTATTGATAGTTTAGACAGTAAAGTTGAT 403262 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 403323 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 403384 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 403445 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTATCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGGAGGCTTTTCTACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTAGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAACTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTACCGATTG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 419613-422694 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUTU01000002.1 Salmonella enterica strain CFSAN071940 CFSAN071940_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 419613 29 100.0 32 ............................. CGCCCCTCATCCACCAGGGCGATGTGATTCCC 419674 29 100.0 32 ............................. TGGTAGCCGACGGGCGTATTGCGGGGTGCATA 419735 29 100.0 32 ............................. GCTGTTTTGACTTTGGATCGTGAGCAGAGCGT 419796 29 100.0 32 ............................. CGCGTTCAGACATTTATCAAAAAACGCGACGC 419857 29 100.0 32 ............................. TTTGCCGCCTCGTAGTAATCCACCAGGCCAGC 419918 29 100.0 32 ............................. TTTTGAGAAATAGCCATCTTTTTTAACTAACT 419979 29 100.0 32 ............................. CGAACGGTGCTGAAATTATTGAAAATGCGGTA 420040 29 100.0 32 ............................. ACAGTTTGTTGAAATCTACGACTTGAGGACTA 420101 29 100.0 32 ............................. GACAAACGCGCGGCTGGAGTCAGGATCAGATA 420162 29 100.0 32 ............................. GACGACAGTTATATGAAAACGCATTGAGCGGT 420223 29 100.0 32 ............................. TTATCGATCGTCCAATCGACCTGCATCTCGGT 420284 29 100.0 32 ............................. CGATTCCAGGCGAACGCGCGTCTCAGCAGGCA 420345 29 100.0 32 ............................. GACACTGGTCTATTATCGCCCACCGGAAGAAT 420406 29 100.0 32 ............................. CCGCACCGCTGGACAGTCGAAGAACTGGCAGA 420467 29 100.0 32 ............................. TCTAAAACTTCCTGAAATTTACGCTCTAGTGC 420528 29 100.0 32 ............................. GTATCGATCAACACTAATTCGCCAGTGTTCAG 420589 29 100.0 32 ............................. TGGCGCCGTAGGGGGTTGCAGAATTTTATAAA 420650 29 100.0 32 ............................. GCGAACCCTCATCTGTTACTGGATCAGTGCGT 420711 29 100.0 32 ............................. AATTGCCCTTGCTGCCCGGCTCTTCTACGGTC 420772 29 100.0 32 ............................. CATCCAGACGAAAAAGCGCGTTTCGCGGCGCT 420833 29 100.0 32 ............................. CTGGTTGTTGGCTTTTACATGGATTCTGGTCT 420894 29 100.0 32 ............................. CGGCTAACGAGTGTCGCCCGTGGAAACGTAAC 420955 29 100.0 33 ............................. GATCGCTCCGTTCGCGTCGAACACCCGGAGGGG 421017 29 100.0 32 ............................. GGGGAGAGAGGAAAGGGGGGTTGGGGGGGTTT 421078 29 100.0 32 ............................. ATCGTTGTGGTCCGCGTTGCTGAGGACGAGGA 421139 29 100.0 32 ............................. CGCGACAGCGCGTTTCACTGCATCGTCCATAA 421200 29 100.0 33 ............................. CCAGTCAGCACCAGACCAGAAGCCGTTAACCGC 421262 29 100.0 32 ............................. TTGAAGATTTGGTGAAGGGCGCATTTGAGGAC 421323 29 100.0 32 ............................. TTGAAGATTTGGTGAAGGGCGCATTTGAGGAC 421384 29 100.0 32 ............................. TTCGTGCTTAATAGAGGAGGCTGGTTAGATAT 421445 29 100.0 32 ............................. GCGGGACTGTTAGGGATAGACCCCGGAGATTT 421506 29 100.0 32 ............................. GCAACACAGGGTTTAACCGGTTCCCTGGCGCT 421567 29 100.0 32 ............................. ACCAGATTAAAGTCGGTCTGGAAATGGTCATG 421628 29 100.0 32 ............................. TTATCTGGACAGGTGACAGCGAACACGAAATC 421689 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 421750 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 421811 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 421872 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 421933 29 96.6 32 .............T............... CCGGGTGCACGCTTTTATTTTTTATGACTCCC 421994 29 96.6 32 .............T............... CAATTTTTAACGATCACTCAGATAAAACAGCA 422055 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 422116 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 422177 29 96.6 32 .............T............... ACCTATATGCGCGCCACGGGTAAGACCTGGGA 422238 29 100.0 32 ............................. GAGGTAAACGCAGCGGTACCCCTGCGGGGTAT 422299 29 96.6 32 .................C........... GAGGTAAACGCAGCGGTACCCCTGCGGGGTAT 422360 29 96.6 32 .......................T..... CACTTGTAATTCTTCGAGTTTATCGATGAATT 422421 29 100.0 32 ............................. ACGTTTATTCATCAAATGGGGAGATTCTGCTG 422482 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 422543 29 100.0 32 ............................. TTCCGCCATGACCGTTTCGGCCTCCAGCTTTC 422604 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 422665 29 96.6 0 A............................ | A [422691] ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGTGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //