Array 1 145239-144257 **** Predicted by CRISPRDetect 2.4 *** >NC_017791.1 Deinococcus gobiensis I-0 plasmid P2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 145238 37 100.0 35 ..................................... TTGTCGATAGTCGGGTACAGGTGTTCGACGTTCTG 145166 37 100.0 35 ..................................... CGGATGATGATTCTCCGGATCACACGTCAGCGCAT 145094 37 100.0 36 ..................................... AGTAGGTGTTGCTCGGCTGGAAGTAGTTCTGTCCCA 145021 37 100.0 35 ..................................... GAGTACCTGGCGCACCGGCCGTGCGGGGACGGGTT 144949 37 100.0 36 ..................................... CGGCCGCATCGGCGCTCACTCGGCCACCGCCGGAGC 144876 37 100.0 34 ..................................... TGAATGTCACAGTACCGGTCAATGAAGTCGTCCA 144805 37 100.0 37 ..................................... CAGGCGTTCCGCGAAGGCGTAGACGTGGACCTGTTCG 144731 37 100.0 35 ..................................... CTGAGCATCGTGCGCGGCTACCGGAAGGACTCGAC 144659 37 97.3 37 ..........G.......................... CCAGCGTGTTCGTGGTCGCCGCCACGGGTGACGAGCT 144585 37 100.0 36 ..................................... TCGGCACGCTCACTCTGGTCCTCAATCCACAGTGCC 144512 37 100.0 37 ..................................... TGCCGAGGCGGGCGCGTGAGCGGGCCGCAGCAGGCCG 144438 37 100.0 35 ..................................... ACTTCGAAGCGGGTCTCCCGAACTGCTTCCGGGGC 144366 37 100.0 36 ..................................... AGGACGCCGCCCGCAGCCTTGCGGACACCCTGAACA 144293 37 97.3 0 .............T....................... | ========== ====== ====== ====== ===================================== ===================================== ================== 14 37 99.6 36 GCCGCAACGTACTCCCCGGGCGATAGGGGACTGAAAC # Left flank : CCCTGCTTGTGGAGGCTGAATTGGGTCTCCTGTGTCCGCATGGATACTGGCACAGCAGTCGCACCCGCCAGACTCACATGGTCCTTTTCGATACACGCCTGAGGAATCGGACTCGGGCGGCTATTCAGGTGGTACGCGGCTTTATCCTCGCTGAGCAGTGTCCATCACCTACAGCTCAAACGGTCAAGTGCCTGGAGTGCGAGTTGCGAAATTTCTGTGGGGATACCCTATGACATCGCAACAGATCACGGTGTTCAGAAGTTGTGGTCATTTGCGAGACGTGGAGGACACGCCCTGCAAGATCGTCTGAGTTTTGACACAAGGGGCTGGGGCGCAATTTATGAAGAGAGGCGTGGCAGGCGGTTCGCAAATGGAAGAGAGGAATAAGGTTACTGACGGTTTGCGAAGTGGCCCGGCGCGCTATGTTGATTGCCGTGGTCAGGGTGCCACGTGTTTCATGACAACATGTTTGGCAAATCCAAAACAGCGTGGAATACGCG # Right flank : TGCGCTGGCCCGCGCGAGCGGGCCACACCTCATCGCGAAGAGATCAGTTCGCGGGCACCCGCCACACATCCTCAAGCACGAGTACCTGGAAGGTAGGTTGCCAGCGTGCGATATGGAACATGATTGCCCGGCAGAGGGGCGGGTGCGTCACGGCAAGCTTGATCAGGTCGTCCGACCTGGCGGTCTCCGCGAAACGCAGGAGGGCGGCATGGACCTCGGCCTCGAAGCGCTGGAAGTCCGGGTACAGCATGGCGGCCTCGCCATAGGAGTAGAGGACCTCAAGGATGCTGTGAGGATAGATGATGTGATCGAGCGCGCTGATGAGCGCCTGGTGCCGTCGCCCACAGGGGCGGGACAAGCTGATATCTTCCACGATGGTTTCCTTTTATCTGAGGGGGAATCAGGGAGGCGGGAAACTTTGGTCGGTGCCCCGCCTCTTCTCTCCAAAAATATAGCACGCTGAAAGCCTAAAAATAAACACTGCTGTTGACTTTATCAAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAACGTACTCCCCGGGCGATAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 159497-158955 **** Predicted by CRISPRDetect 2.4 *** >NC_017791.1 Deinococcus gobiensis I-0 plasmid P2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 159496 37 100.0 35 ..................................... CTAGTCAGGTATGCGGGGTGTAGCGTTGTCCTGTG 159424 37 100.0 34 ..................................... CCATATCTACCTGACTCTCGAGCACAAGGGTGCC 159353 37 100.0 35 ..................................... TCATCGCAGGCACAGCCGTGCTGGGCGACGCGCAG 159281 37 100.0 35 ..................................... AAGCCGAGTGCCTGATTACAGGCGAAGTCGGGCCG 159209 37 94.6 32 ..........A....................C..... ATGGGCTGAGTAAACATCATTATGCCGCCGCC 159140 36 97.3 41 ..................-.................. TGAAACCCGACCGCGTAGGGTCTATCGGAGGGCGGGGCCTG 159063 37 91.9 34 ...A...........T.........A........... AACTGCTCAGTGACCGCGCTGATACCGCCCGCGA 158992 37 81.1 0 ...A........T.........A.......G..CCT. | C [158957] ========== ====== ====== ====== ===================================== ========================================= ================== 8 37 95.6 35 GTCGCGGCCTGCCTTCGGGTGGGCCGAGGATTGAAAC # Left flank : ACCGCCAGGATCAGTGCCGTGAAGACGACGAGGCGGCGAGCGTCCACAGGGAAAGCAGACCGCAAGGCGGTCTGCAAGGTATCGTGAGGTGGTCGGCTCCTCAGGGTTTTCATTGCAGAAATACCGTACAGGAGCCGACTTCCTGCTGCCTACTGTGCATTTTGAAGGGTAGTCAGGAGGGAAACTGCTTGAGGTCTTGGAACCAGCCGAGGACAGCATCCGAATCTACCGTCTGCGCCAGCCGCGCGAGAAGTTCGTGGAAGCGTTCGGACGTGACCGATATGTGGATTTTACTGACCCGATGATCCTGTAGGTCGCCTCCCGTGCGAACCCCCCGCGACGGATGGAAGCCGGGGGGTTCGCGTTGTCCCAGGAAAGCGTATGGGACGCGTTGCATGACAAAATGAACAGAGAAGTGTCTAAAAGTTGAAGAGGCCCGCGAGGGGTTCGCGGAATGTGGTCTATAAATATCGTCCCAGTACGTCTCTAGTATCATAACT # Right flank : GGCGTCGGCCACTGTCGCGAAGGGTGATGACCTCGCCGGATTTGGGCAGCGCAACGTCGTACCGCGTGTCCAAGTACCCTGCAATGTTATGCCTGGGAGCTACATTCCCACGCGTGAGCAGCACCTTCCCCGGCCGGTACCGAGCAATCATGCCCAGGAGGACGCCCTGATCCGCGTGTGCAGACGGATAGAAGCGCTCGACGCGGGCATAGGCACGGGCTCGCGGCCGCCGCGACCATTCGGCAGCATCACGTCCCCACCCTGCTATAACTCCAGCAGCCGATGCCCTAGCAACTCGGCATCCTGGTAGCCCACGACGAACAACGCGTTCTCTGCTTCTGGCAGCCACGCCCGGGCATAGATCGAGCTCGCCCCCGCGTGCAGCATCCCGCTGCCGGCGAGGGATAGGGCGGAGCGTAGATTGTCGCTATGCGCTCCGCTGCCTTGTCGTCTCCGGTGCTTCTCTCTCTTCTGCTCGTTCCGTCCTTCTCTGCAGCCCA # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGGCCTGCCTTCGGGTGGGCCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-15.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 1 7628-4427 **** Predicted by CRISPRDetect 2.4 *** >NC_017806.1 Deinococcus gobiensis I-0 plasmid P5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7627 29 100.0 32 ............................. AGCTGGACGACGACGCTCCGCCCGCTCCGCCA 7566 29 100.0 32 ............................. GCTTTTAGGACTCGCTGGCCTCCGTTCAGATT 7505 29 100.0 32 ............................. GGAGGGGGAGAGGCGACGAGGACGAAGCGACG 7444 29 100.0 32 ............................. TGCAGCTCTTCCAGGTCCAGGCCGTGCAGGTG 7383 29 100.0 32 ............................. CATCAATCCAGCTCACGCTTCCGCCTCCATCC 7322 29 100.0 32 ............................. CCGCCGATATGGGTCCCGCCCGCTCGGCTGAG 7261 29 100.0 32 ............................. TCCTGCACGAGCGCGCGCAGCAGCACCAGCTC 7200 29 100.0 32 ............................. TCTGCGGCGGCCTGGGCCTCTTCGAGCGTTGC 7139 29 100.0 32 ............................. GTCCTGATCAAGCGCCAGGACGAACAGGCCAC 7078 29 100.0 32 ............................. TGCATTACTCCCGAGTTCCAGAGCTACCGAAC 7017 29 100.0 32 ............................. TAATTCACCCCATGGGGTGCGGTCATCCCGCA 6956 29 100.0 32 ............................. CCGCGCTTCCTCAGCTCTGCCTTGAAGCTGGC 6895 29 100.0 32 ............................. CACGACTGGACCACCCCGCGCGATTTCTGGGC 6834 29 96.6 32 ............................T ACAACCCCACTCTGGAACGCCCCGGCGACATG 6773 29 100.0 32 ............................. CGACATAATGGTTCCTCCTTTAGTAGCCGTCA 6712 29 100.0 32 ............................. CACTCTCGCAGCTTGCCGCGAACTTCGGCCAG 6651 29 100.0 32 ............................. TGGCAGCGTACTGGGCTCCATTGGATGCACCC 6590 29 100.0 32 ............................. CAGTAGCCCCACTCAGCAGCCGCGCACCCCAT 6529 29 100.0 32 ............................. CCAAGCTCACGAGCGGGGAACGCGACCTACTC 6468 29 100.0 32 ............................. TGCTTGACCTGTGCAACGTCCTCATGGGGGAG 6407 29 100.0 32 ............................. GGTATTGGGCGCCTGCGGATCAAGACGCCCTA 6346 29 100.0 32 ............................. GCGGCCCCGCAGGTGGGGGGCAGTCCGATGGC 6285 29 100.0 32 ............................. TGGCCGGGATCCTCGGCATCTCGAGCTACACC 6224 29 100.0 32 ............................. TGGCCGGGATCCTCGGCATCTCGAGCTACACC 6163 29 100.0 32 ............................. TCTGCCTAGAGGGCGAGTACCTCTGGGATGTG 6102 29 100.0 32 ............................. TCGCCGCGTTCATTCTGTCCGGCGAGGCTAAC 6041 29 100.0 32 ............................. GGACTCAGCCCAGCCGCGCGCGGCTGGATCGG 5980 29 96.6 31 ............................C GTGAGGCGGTGGGCGTGGCTGGCGTTCTGCG 5920 29 100.0 32 ............................. CCCTGTCCGTGCACGACTAGGCTTGAGGGGCT 5859 29 100.0 32 ............................. TTGGCCAGCGCCTCCAGGCCCTGCGCGTAGTC 5798 29 100.0 32 ............................. GACGGCGCGATGCTCTTGAACTCGCCTTCTTT 5737 29 100.0 32 ............................. GGTGGGCGCGGGTTTCCGTTGTTATGTTGCAC 5676 29 100.0 32 ............................. TCTGACCGACTCCCCCTGAGCCCGCCCCATTC 5615 29 100.0 32 ............................. GTCTTCTCCAGCACGGCGTCCGTGTCCGAGCC 5554 29 100.0 32 ............................. ATGCCCAAGCGCCAGGACATCGAGCAGTATTT 5493 29 100.0 32 ............................. TTTGGCTTTCGCCTGGGCCACTTTGGGCATGA 5432 29 100.0 32 ............................. CGCGGTCTTCAGTTCGGCGTCTTCCAGGCCCT 5371 29 100.0 32 ............................. TACATCATCGAGACGTTCACCGACCCCCTGCT 5310 29 100.0 32 ............................. TGACGGTCTACCTCACGCCGGACGCGCTCGCC 5249 29 100.0 32 ............................. ACGCCCTGCTCCAGGGGGATCAGCCCTATCTG 5188 29 100.0 32 ............................. CCCGCCCTGTTCCTCTGACACGGCGTTCACCT 5127 29 96.6 32 .T........................... GCAAACTCGGACGGGGCGACTTTGGTCGGCTG 5066 29 100.0 32 ............................. GGCCTGAACGGTGATGCCCTCATTACTGGCCC 5005 29 100.0 32 ............................. GTTCCGGCGGCGCGGCGGCCCGGCGGCCGGCC 4944 29 100.0 32 ............................. AGAGCTGGCGAGGATCTGGCGCAGCCGTGGTG 4883 29 100.0 32 ............................. AATGGCGTAGAGTTGTGACCCGTTGATACGAA 4822 29 100.0 32 ............................. TTCTCCTCCATGAAAGGGCTGATTCCCAGGTC 4761 29 100.0 32 ............................. GAGCATCCCATGAACCTCAACCTGAACATGCA 4700 29 96.6 32 .....................C....... GTGGAGACTGACAACATCCGCAAACTACGTGA 4639 29 96.6 32 .....................C....... GGGGATTAGTGGGAATGGTTCTCGTCTGGCTG 4578 29 100.0 32 ............................. GACTGCCGCTTCTACCAGATGGTCGAGGAGGC 4517 29 96.6 32 ..A.......................... TTGCTGTCGATGATCGTCTTCCCAGTGCCCTT 4456 29 100.0 0 ............................. | G [4431] ========== ====== ====== ====== ============================= ================================ ================== 53 29 99.6 32 GCGTTCCCCACAGGCGTGGGGATGGACCG # Left flank : CCACCTCCTACTTGGTGGCGACGATATGGACCCTGATCCGACGGCCCCCGGCGACCTGTGGGACCCTTTGGGCGACGTGCAAGGCGGCGTGAACCACGCGTGATTGTTATGACGTTGGAGGCTGTGCCACCGTCGCTGCGGGGTGAGCTGAGCCGCTGGCTGATGGAGGTGCAGCCCGGCGTGTATGTCGGCAACGCGACCGCCTTGGTACGCGATCTATTGTGGGATAAGGCCGTGCAGAACGCGCGCACCGGCCGCTGTACCCAGATTTACCGTGCGAACAACGAGCAGGGCTTCGCCGTACGGATGTACGGCGACCCGCACCGCACATTGGTGAGCCTTGACGGCTTCCAACTCGTCGCCATTCGCAACGCCCGTCATATAGAGTTGCAGGGGGAATACGACCCTCCCGAGGATGATGACAAATTGTAATGTGTATCCGCCTATGGGCCTGCGCCTTACGGCGGATTGACGCTAGGAAAAGAGCGTAGTTCTGAAGT # Right flank : GCTCAGGGTGGCACTTGGGCAGGCGGCACATGGCGTCCCTCACAGGTATGGGGGGACTCTGGGCAAACATGCTTAGGCAGCGACCCCGAATAGCCCCTTGCGAAAGAGACTCACCGCACGGATCTTGTACACCTTGATCGCCAGATTGCTGCGCGTCTGCGACACCTGGGTAAAGTTACGACGGAAGGGGAAGATCGCGACATTCATTACTGGGCATTGACCTCAGCTGAGCCTGCTTGTCTCATGCTGCGTTGTCCTGATGAGTAAGCCCCAGCCTCTATCCCGACATTCGGGCACGGACAGGGGCGGGGCTTTCTTATTTGGCCTACCTTCCGCTGCCCGTGCTGTGCTCTGACTGAGCCAAGTCGTTGCCGCCAAGGCTGGAGGTCACCCCAAGTGCAGGTCCGGTGACCAGGGGATAGCCCCCCTTGGACTGACCAGGATTTTCTCCCTGAGGTTCGCGCTGGAGATCAAGGGCACGAGCGCGTAACCTGGTGCTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCACAGGCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20338-26218 **** Predicted by CRISPRDetect 2.4 *** >NC_017806.1 Deinococcus gobiensis I-0 plasmid P5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20338 29 100.0 32 ............................. GGATGACCACGGACAACTACCAGGTGATGAAC 20399 29 100.0 32 ............................. TTGAAAGAGGCCGAGGGACTTACTAGGGACTA 20460 29 100.0 32 ............................. TTTCCACGCGCGCCAGGTCGGCCCGCTGTTCT 20521 29 100.0 32 ............................. GCTCTTGGTGGTACATGGGATGAGGCATCTAA 20582 29 100.0 32 ............................. TCTATGAAGAATAAAAGAAATTAGTCCCTAGT 20643 29 100.0 32 ............................. CATGCCCCTAGCTTCCGGGGGCGCGTGACACC 20704 29 100.0 32 ............................. ATTGCTGCCGCCGAGGGCTTCCTGCCCACCAT 20765 29 100.0 32 ............................. GCGTCCTTGCAGGTGTTCAACCCGGTTGAGAC 20826 29 100.0 32 ............................. AGGGCGTCTAGCACGCCGGGTAGAGGCACCTC 20887 29 100.0 32 ............................. CGACGGAATGGGCGCAGGGTTTCCCCCCTCCC 20948 29 100.0 32 ............................. TTTTGGAATGGGTGACAGCGTTCCCGATCTCG 21009 29 100.0 32 ............................. GGCGGCGAGCAGCAAACCTATTTCACGAGAGG 21070 29 96.6 33 ............................A GGATTCCTAGTCATCCTACCGTTCCGATGTTCG 21132 29 100.0 32 ............................. CTAGACCATCCGCTCTGTTGGGGCCGTAAAAA 21193 29 100.0 32 ............................. TACAACCGGATGGTGGATTGCGGCCTGGAGGA 21254 29 100.0 32 ............................. TGCTTGCAGCCATTGCGACCATGACGGCAGGC 21315 29 100.0 32 ............................. CCGACGGTCTGGACCTTCACGGGTGCATGTGC 21376 29 100.0 32 ............................. AGAGATCACCCCACCCTGCGAGGTGCCCCATG 21437 29 100.0 32 ............................. CGCTCTTCGTTCTCGATCCGCTGGCCCTTCTC 21498 29 100.0 32 ............................. GTGGTGGCCTTCGTGGTGTCGTTGATGAACCA 21559 29 100.0 32 ............................. TACAGCTATCGCCGTGTTGACATCCTGTCGCA 21620 29 100.0 32 ............................. CCCCCTAGCTCCGTTTCTTAGCTCGGTTCACA 21681 29 100.0 32 ............................. ACCCGCGAGTACGCCACTGCCCCAGTCACCCC 21742 29 100.0 32 ............................. GCCTCGCGCGGCTTGCCCTTCTCGACGTCCAC 21803 29 100.0 32 ............................. TTGCACCGCTGGCAGGCCACCGTCAGGTTGCT 21864 29 100.0 32 ............................. ATGCACCCGCAGGAGCGTGCCCGCCTACAGAC 21925 29 100.0 32 ............................. GCGGCGCGGGCCTTGTCCTTCGCAATCCGGTT 21986 29 100.0 32 ............................. GCAGGGATGGCCCTGGCGGGTGGGAGCAAGGC 22047 29 100.0 32 ............................. ACCGACGCCGGGGGCAACTACCAGGGCGAGAC 22108 29 100.0 32 ............................. CGGGTCACGCTGCTGCGCCCGAGTGTGGCCAC 22169 29 100.0 32 ............................. TCCTTCTGGCCGATAGCGCCCTGCCTGTAGCC 22230 29 100.0 32 ............................. GTGAACGACTTCAGCGCGGGCAGCAGGTCATC 22291 29 100.0 32 ............................. CAGAGCCGCGCGACGTTCGGCGTGGCGATCCC 22352 29 100.0 32 ............................. GTGCCTGAGCAGGCGGTCCCCTCTGTGGCCCT 22413 29 100.0 32 ............................. TCCGCGAGCTGGTCGAGCAGCCCCGACCGGCC 22474 29 100.0 32 ............................. TCGTACTGCACGCCCCCTGTGTCCACCGCGTA 22535 29 96.6 32 ...........G................. GACCCGGCGGCCTTCTCGGTGTTCAGCGAGGG 22596 29 100.0 31 ............................. AGCGCCCCAGTGACCAGCACCTACGCCCCGG 22656 29 100.0 32 ............................. AAACGCCGCGTCGCGCGCATCCCGCACAGCCC 22717 29 100.0 32 ............................. TGGCTCGCCAGCCTGACCCCGACGGAGATCGG 22778 29 100.0 32 ............................. GCCAACAGCGCCGCGCTCGCGCTGGCCCGCAA 22839 29 100.0 32 ............................. CGGGCTGGTTCGTATGAATTGTTGTGCGCCTG 22900 29 100.0 32 ............................. ATGGATTGCGGGGAAGGGGTGGGCACAGAGGT 22961 29 100.0 32 ............................. CCGTTATCTACCGACTCGCCCAGAAACACGCG 23022 29 100.0 32 ............................. CAGGGGTCGTCTACGAAACGGCCCGTCGCGCC 23083 29 100.0 32 ............................. TACGGCATAGACGCGATGGTCATTCTCCAGCA 23144 29 100.0 32 ............................. GCGCTCATGGCCGCGCCCGATGAGGTCACGCT 23205 29 100.0 32 ............................. CAATTTGGAGCCGCCCGCCTAGAGTCGGCCCG 23266 29 100.0 32 ............................. GCCAGGGACCCGATCATGTGATCGGCCAGGGT 23327 29 100.0 32 ............................. GCCACTGAGGCTGACCTGAGCGCCGCTCAGGT 23388 29 100.0 32 ............................. CTGTGTGGGGTCATTCCACATCTCGATCATCT 23449 29 100.0 32 ............................. TTGCGGACGGCTTGCACCAACAGCTCCTGAGC 23510 29 100.0 32 ............................. TCCGGCCGGGAGGGTCAGCGCAGGTCGGCCGC 23571 29 100.0 32 ............................. CGGCAGCCCTGCGGCAACTCTGGCGGCACGTC 23632 29 100.0 32 ............................. GTCATGCCGCCCGCGCTCAGGGTGGCGATCCC 23693 29 100.0 32 ............................. GAGCCGCCACCATGACCGACACCACCACGACC 23754 29 100.0 32 ............................. CCTGCCGCCTGGGAGCTGCACCGCACCCTGGG 23815 29 100.0 32 ............................. TCCACCTCAAGAGTCAGGCGGTGGGCGTGGCT 23876 29 100.0 32 ............................. TCCGACCCTGGCGTGGTACGCCGCCGGATTGA 23937 29 100.0 32 ............................. TGCCCCCAGGCCGCACACAGCGTGCCGTGGTA 23998 29 100.0 32 ............................. TACGCCAGGGCGGCGTAGGCCTTGCTCTGCCA 24059 29 100.0 32 ............................. CCGGGCGAGATCGTCTACATTCCCGGCGTCGG 24120 29 100.0 32 ............................. ATGTCCGACCAGCGGCCATGCTCCACCTCGGG 24181 29 100.0 32 ............................. GCCGCCAGTTGCCGGGATTGATTCGTGACCTT 24242 29 100.0 32 ............................. GAGACTCCCGACCATGTTCAAGATTCAGTACG 24303 29 100.0 32 ............................. TTGTCCCGCCAGTTCACTGTCGCCACCCCGGC 24364 29 100.0 32 ............................. GACTGGAGCGGCACGGGGGCAACCGTGACGTA 24425 29 100.0 32 ............................. ATGATGTTGCGAAGGTTCTTAGTCATATGACG 24486 29 100.0 32 ............................. ACGGCACAATCATAGGTCAACGCTTCAAAAAA 24547 29 100.0 32 ............................. CTCCACGGGTGCGGGATTGTTGCGGGTAATGC 24608 29 100.0 32 ............................. CCTTCGCTGACCGGCGACATCGTGAGCCACTA 24669 29 100.0 32 ............................. TACCGGCGCGGCGCAGGCATGGGGTGTAGCAG 24730 29 100.0 32 ............................. GCGATGGCGAGCAGCACCATGCGCTGGTAGAT 24791 29 100.0 32 ............................. CGAGCTGGCCTACCGCGCCCCCAGCAGCCCGC 24852 29 100.0 32 ............................. GCCAGGGTGCGGTGGGCGGCCTGCGTGGCCGG 24913 29 100.0 32 ............................. ATTTTGACTGGGCTGCCCCAGACGCCTCAGAG 24974 29 100.0 32 ............................. GTATTCGTGAACGGTCAGGACTGGAGTCATTG 25035 29 100.0 32 ............................. GGGGGCGGGAGGGCGTGATTATTGGGTATGGC 25096 29 100.0 32 ............................. TTACCGCCTATTGCACCGACCCGGCCGAGTGG 25157 29 100.0 32 ............................. GTTAATAGAACATTTAGCGTTGCCCGGCGTTT 25218 29 100.0 32 ............................. TCGATGCTGTCCGCGACTTCGCGCTCCCAGAT 25279 29 100.0 32 ............................. ATCAAGATGCTGCCGACCTTCGTCGGGGCACT 25340 29 100.0 32 ............................. GCCCAACCTACAGGACTGTCAGAAATGACAGG 25401 29 100.0 32 ............................. TGGGCGCAAGCAAACGCGCCCCAGCAGTGAGC 25462 29 100.0 32 ............................. CTCATTGGGCGCGCTCTCGGTAGGGTGGCACC 25523 29 100.0 32 ............................. CAACGCAGCTTCCGAACGTTTAGGCCCCCGCT 25584 29 100.0 32 ............................. AGTACCGCACCACCACGATGTGCCACGGTTCT 25645 29 100.0 28 ............................. CCCGGCTAAAACCCCAGCACCCCCGCTT 25702 29 96.6 32 ........T.................... GGCACCGGCTGGGTCTGGGACATGACCCGTAC 25763 29 96.6 32 ......................C...... CCGAACTCGTCGTTGCTGCCGTGCTGTCCACC 25824 29 100.0 32 ............................. CCCGGCACGGTGGACCTGCTGCGCCCCTGGGG 25885 29 96.6 32 ........T.................... CTCAGGCCAAAGCCGCCCATCACTCGGCCTTG 25946 29 100.0 32 ............................. GCCTGCCCCTTGCCTGACCGCCGCGCGTACCA 26007 29 93.1 32 .................A.........T. GGCAACACGGCAGACGCGGCCAATGGCGGCGA 26068 29 93.1 32 ........T.................T.. AGCCGGCAGGTGGCCCTGAGCCTGGGCCTGGC 26129 29 89.7 32 ..............G.......C.A.... GCAACAGAAGTCCAAGATGTGGTGCTGTACCA 26190 29 75.9 0 A......T...G..T..AT.A........ | ========== ====== ====== ====== ============================= ================================= ================== 97 29 99.3 32 GTGTTCCCCACAGGCGTGGGGATGGACCG # Left flank : GATCCGGCTGCTACAGCCGGAGAAGAGGCGGACGAACCTCGCCTTGGCACCCGCCTAGGCGATGAGAGCCTGCGCATCGTACCCTTGCACCGCTATGACACGGTCTATCTGGATGCGAAGGGACGGGAGACGGCCCAAGTCGCGACGCTGCGACGTGACAACTGGGACTTAGCCCGAAAGATTTATGCTCGCAGCCTGCAGATCTCTAGGCATGACGTGATCGCCGCCCTAAAGGCCAATCCAACGGTACGTGGCAATGAGCACCGGGGCTGGGCAGCCCATCCCCTGCTGCGCGACGCTGAACCGCTTGAACTCGTGAACGGCGAGATCCTCCTCGGGAAGACACGCCTCCGCCTCGATCTGGAGCTGGGTCTAGTCTACGAGCGCCTAGAATGAGCTTGGGCAGGGCGCCCGCGCTGGATGACAATGTGAGCTGGATTTAGATGCACAAGGGATACTTCTAGGTCTTGTGTACAAGATTGGCCACGTATTTCTGAAGT # Right flank : GTTGCAAATACCTCTGAAACGGTTGTGAGCCCAGTTCTCCCCTGCAATCGTGGGGAGCCTGATATTCAAACTACTTTGACCGCTTCTGTATCGCCTTTTAGGTCTACCTGCTGGTCTATCATAGGAGGGGTATACCCCTCTCCCCTGTCCTGATCTCGGCCACTCCGACCCAAGATCGTACCGGTACGACCCTATCTCCATATATTCCAACACGCCAGTTCGTACCGGTACGATCTCAAGTATCGTACCGGCATGATCACGCTCACAGTGTTCAACCACGCGGGTGGCGCAGGCAAGACCAGCCTCGCCCGCGACGTCGGCTATGAGCTCGCCCACGGTGGCCAGCGTGTGTTGCTGATCGACCTCGATCCCCAGGCCAACCTTACGGGCTGGTTGGGTGTGGGCGGGATCGAGATCGACCAGACCATCTATCCAGTCGCGGTCGACGGCGCGCCCTTGCCTGCGCCAGTACAGGTCCACGGCCTATCCCTCATTCCGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACAGGCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //