Array 1 122262-119594 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHWT010000006.1 Xanthomonas sp. D-93 D-93_0000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 122261 28 100.0 32 ............................ AGGTCGGCGCGCACATATTCGATTTCCAGGCC 122201 28 100.0 32 ............................ TCAACCCGCAGACCATCAAGTTCGACGTTGGC 122141 28 100.0 32 ............................ TGGCCGTCCACCTCAGCTACCAGCATCACGCT 122081 28 100.0 32 ............................ GATGGGCATTTGATCTCCACAAGGCCATCCAC 122021 28 100.0 32 ............................ GCTACACGCCTTGGTCAAGGTCCGCGCTCCGA 121961 28 100.0 32 ............................ GCGTCACCGCCTCGGTCCAACGCCGGCGTGGC 121901 28 100.0 32 ............................ TTCTGGCGCTGTGCCTGGCGCTTCTGATCATC 121841 28 100.0 32 ............................ ACCTGCAGGACGCAGCAGAAGGCTGCGATGCG 121781 28 100.0 32 ............................ TTCGCATCGGAAGACGCGTCCTCGTTGTTGAC 121721 28 100.0 32 ............................ CGTCCGCAGTGGCACGAATCTCTGCGCACGCG 121661 28 100.0 32 ............................ AGAAGTCGCCGTGGTCGTCCGCGGCGTCGCGC 121601 28 100.0 32 ............................ CACTCGGCAAGGCAACTGTGCGGCAGTTACTT 121541 28 100.0 32 ............................ TCCACCCATCGACAAGGAGAACGACGTGAATG 121481 28 100.0 32 ............................ TGGCTGTCACGTCGTTCTCCCAGCTACTGGCT 121421 28 100.0 32 ............................ TGAGCCGCCGGGAGGGGATTAATGATTCCGAT 121361 28 100.0 32 ............................ ACTACCTGCCGTCGCTTGAGCGCGCCACTCGT 121301 28 100.0 32 ............................ CAAGAGATAGGGATACACCAAGGCCCCGTGTC 121241 28 100.0 32 ............................ TTACGTGGATTCACTGGTGCATCGCGCGAACG 121181 28 100.0 32 ............................ CACGTGCCCGTCAGGCCGTAAGCATCAGCAAC 121121 28 100.0 32 ............................ TGAAGTCGACCGAAGACGCCAGCGAAGAGGAA 121061 28 100.0 32 ............................ AGCCGGTGGGGCAGGAGGCGGTGGCGCTTGGT 121001 27 96.4 32 ..................-......... ATGACGGCCGCGCGCTGCGCTTCGGCTGCGAA 120942 28 100.0 32 ............................ TGCAGCGCTGGACCGCCGACGCCTTCCGCAGC 120882 28 100.0 32 ............................ GCAAGCGGCGTGATGAAGACCATCGCCGCATC 120822 28 100.0 32 ............................ GGTCTGAGATTTGATTTCCAGGCCGATGAACA 120762 28 100.0 33 ............................ TAGACAGGTCACCTCAACGGCCTGCGCCATGAC 120701 28 96.4 32 ...........C................ AAAAGGCCGCGCGGCTCAGCTACTACCTACGC 120641 28 100.0 32 ............................ ATGTCGAACGAACCGCGTTACCTGATCCGCGT 120581 28 100.0 32 ............................ TGGAAAGGATTACCGCCGGGGGACCTGTCACC 120521 28 100.0 32 ............................ GCCACGGATTTTGCGGAGACGTTCGGGATCTC 120461 28 96.4 32 ..........................G. TTAACCCACCACCGCCCCGCATTCCACAGGAG 120401 28 100.0 32 ............................ CGCGGGCGCCTGAGCAGCGCCGGGCCGGCTTC 120341 28 100.0 32 ............................ CAGAACAGCGCTTGATTGCCTTGATGGGGCAC 120281 28 100.0 32 ............................ TCCCGGCCCGGGGCGGCGCGACGCTGCACAAG 120221 28 100.0 32 ............................ GGATCGTGTTCGAGCGGCGCAAGGACATCTTC 120161 28 100.0 32 ............................ TGTACCACTCGCGCAGGCTGTTGAGTTGATCC 120101 28 100.0 32 ............................ AGTGGGTGGCCGAGGCCGAGCTATGACCGAGA 120041 28 96.4 32 ......C..................... AAGAACCGTGTGTGGGAGCAGCAGCCGGATGC 119981 28 100.0 32 ............................ ACTGGGATGCTGCGCATCCGTCCAGTCGCGGG 119921 28 96.4 32 .............G.............. GTAGGCACCGGCCGACACCTCGACCGTTCCGT 119861 28 100.0 32 ............................ ATGTAGCCCACGAACCGATCCAGGGCGCGCCG 119801 28 96.4 32 ....................A....... TTGTTCCGCAGGACCAGCGCAGCTTTGCCGGT 119741 28 100.0 32 ............................ CTGGCTCGCGTAGGCGGTGTGCAATGAGCACC 119681 28 96.4 32 ..............G............. ACGAAGAACTGCTGTTCCAAGACATCCGGCAA 119621 28 92.9 0 ........................A.G. | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.3 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : ACTGCGCAGCCTGATGGCGACGGCCTGGCTGCGGGGCATGCACGATCACCTGCACATTGCCGAGATCGCCGAGGTGCCCGCCACGGCACAGTATCGGCAGGTGACGCGCGTCCAGGCCAAGAGCAGCCCCGAACGCCTGCGCCGACGCGCCATGCGTCGGCACGGCTTGAGCGCCGACGCGGCAGCCGAACGCATTCCGGACACCGCGGCCGAACGATTGCGGCTGCCGTTCGTGGTGCTGGGTAGCCGCAGCACCGGCCAGGCCGCGTTCCCGCTCTTCGTGCGCCATGGGCCCTTCCTGCAGGAACCGATAGCAGGCACGTTCAACAGTTATGGACTCAGTACTGGGGCCACCATTCCCTGGTTCTGACCCTTTTTCCTTGGTGCTTCGAACGCTCCATTGAAATCAAACACTTGGCAGCCGGCTCCAGCAAAGGGGTCGGCTGCTTTTCTTTGCAGGTTTCCTTTCTCCGTCAAAGGCTTGGAGAATGGTGCGGCTA # Right flank : TGATGGCAACCAAGGCACAGCGAAATGGTAGATGTCACTAGCGAAAATCTCTCACTTCCGCTATTGACACGCACGCTAGGCAGTCGCACTCTTGACCCAAGGAGCGTCGAAACTCCTCACGTAGCGGTACCCACCTCCGACAAACCGGTGGGTTTTTTGTGCCTGCATGCTTTGCAAGCGCAAGCCGACGCGATGCCTGCGTCGGGAGGGCGGCTAATACAACACCCTTCGGGGAAATATGCCCGCCGGCTACGTGCGGTTTCGAACCTCCCGACTTCCCGTCCGCCATGCGTGGCGGGCGTACCCCTTGATGGAACGAGGAGGCAACGATGTCGCACGATCGTTTGGACGACGAAGACATGCCCGGCTATTTTTTGCCGGAGGACAGCCAGTTCCGGCTGGCGAAGCTGCGCGATCACGTGCGGTTCCTGACCCGGCTGGCGCAGCCACGGACGCAGCACGAAGAGCGTGCCGCCGAACCCAAGGTGCGCATGGGCGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //