Array 1 16972-16150 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWY01000023.1 Dickeya fangzhongdai strain M074 Contig23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16971 29 100.0 32 ............................. GGCTTGCACCCCGGTTACGGGGAGTATTGTTC 16910 29 100.0 32 ............................. GGAATGCTCGCTGGCACACGGTCGAGAAAGGG 16849 29 100.0 32 ............................. CACAACGCAGATCGCAACGATGGCCGCTATCC 16788 29 100.0 32 ............................. GACGAGGAAACCAACCAGTACCGGCGCTCAGT 16727 29 100.0 32 ............................. TCTGCTACATGGACTCCGACTGGTATGACATC 16666 29 100.0 32 ............................. GAGGTCTATGACGACCGCACTGGAACGAACCG 16605 29 93.1 32 ............CC............... CAACGCCTTGGATGGTTGAGCATACTTTTCAT 16544 29 100.0 32 ............................. TCTTCCGACTCCTGAGCAATTTCGTGACCTGT 16483 29 93.1 32 ............CC............... TGCAAAACGTCCGTTGTCCAGTTTTTGCGCCA 16422 29 93.1 32 ............CC............... CCGGAGGAGAAACTATACAAGGTTTCGGACCG 16361 29 93.1 32 ............CC............... ATGTCCTGCGCCAGAGTGTCGGCATCCCATGC 16300 29 93.1 32 ............CC............... CAGCTTATATCGACGCTGGGATATTCGGGGAC 16239 29 93.1 32 ............CC............... GACGCTGTCACGGATGCATCCAGATTAGCCAC 16178 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.0 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TTGATTGAAGACGTGCTGGCCGCCGGCGAGATCGCGCCGCCACAGGCACCGCCGGACGCGCAACCGCCGGCCATCCCCGAGCCGACGCCGTTTGGCGACGCCGGTCACCGGGGGCATGGCGGATGAGTATGCTGGTGGTGGTCACCGAGAATGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTCTGGCTGCTGGAGGTGCGCGCCGGGGTCTATGTGGGCGACACCTCGCGTCGGGTGCGGGAGATGATCTGGCAACAGGTGGTGGAACTGGCGGAGCAGGGCAACGTGGTGATGGCCTGGGCCACTAATACCGAATCCGGTTTTGAGTTTCAAACCTTCGGTGAAAACCGCCGGATGCCGGTGGACCTCGACGGACTGCGGTTAGTCTCATTTCACCCTGTTGAAAATCAATAGGTTATCGTTCTTTAACAACCGGGTAAAATCGGTGGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : TTTATGTCGATAGCCTGATTGGCGGCGGCCGGTCACGGAAAAAGCCACTACCCAGGTTTGGGTTAAAACGCGTGCCAGTCGTCCTCGCTGCCTGATGCCTTGCCCGATGATGCCGCCGGTTTTAACGCCAGTGTTTTTGCGGCGGGTGGGGCGGAAAGCCGGGGTTTGTTGCCGGGTGCGCTATAAGCGCGGGGGCTGGTTTCTTCCTGATGGAAGATGCTGACCACCTGTTTTAACTGTTCGGCCTGCTGTTGCAAGGCTTGCGTGGCGGTGTTGCCTTCTCTGACCAGCGAGGCATTTTGCAAGGTGGTTTGCTCCATCTTATTGATCGCCATATTCACCTGTTCGATGCCAAGCGACTGCTCCTGACTGGCGACGCTGATTTCCCCCACCAACTCGCTCACTTTGCGCACGCCATCCACAATCCCCTGAATTGAGGCGCCGGCTTTTTCCACCAGTTGGTTCCCGGCGTCCACCGTTTGTACCGAGTGACCGATAAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4247-3558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWY01000045.1 Dickeya fangzhongdai strain M074 Contig45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4246 28 100.0 32 ............................ GGTGCCAGTCGGCGCAAAAATCCTGATACGCC 4186 28 100.0 32 ............................ AGTGAGGCCAGTAAACTTGCCTCGGTAAATAA 4126 28 100.0 32 ............................ GGATGGCCCAGGCGGGGTTAAACGGCTGATTA 4066 28 100.0 32 ............................ ATCCAGATGCGCCATGCGGATCACTTCCATCC 4006 28 100.0 32 ............................ GAGCTTGTTGGCCGTGCGCTGGCAGTGAATGC 3946 28 100.0 32 ............................ TCCTGCGCACGTCGTTTTGCACCCTGCCCGTT 3886 28 100.0 32 ............................ TCATCCGGAACCGTGTAAGGCTGGCTTGCTGG 3826 28 100.0 32 ............................ GCAAGTGCAAAATCTGCGGAGAAAAATTCACC 3766 28 100.0 32 ............................ GTGATGAGCTGGAAGCAAAGTTGGAGAAGCTG 3706 28 100.0 32 ............................ AGTGCCGACACGCTGAAAGTCAATGGCCGGGC 3646 28 92.9 32 ...........GA............... AGCGGTTGTGGTCGAGTCGCCAGCCCCGCCAG 3586 27 85.7 0 ....................A..-..CG | GG [3563] ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.2 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : | # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCCTTGTCGTGCGTGCGATGAAGTAGCAAAGAAACGACACCGCTAATCACGCACGAAACCCTTTTACAGCACCGACATGTTCTCTCTATCCTCATCCGGCAGTATTCCCTCCCCACTCGGGGAGGGAAATATCACTCAGAACGACGTCCAGTCGTCATTGCTACCAGCGGTGGCGGCGGCACGTTTTTCAGTCGCAACCGGGCGAACGGAAGCGGCAGACGGCAGCACGTGGGATAGCGCCGCCGACCGGCGGACCGGCGACGGCACGCCGTTGTTGCCCTGCGGCGTCAGGCGGAACGCGCTGAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 389-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWY01000004.1 Dickeya fangzhongdai strain M074 Contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 388 28 100.0 32 ............................ GTGTCACCTTTGCCCGGATACCATTCATTCTC 328 28 100.0 32 ............................ GGGTGATACACGGTCAGTGTGGTCTTTTTCTT 268 28 100.0 32 ............................ GTTCCGCCAGAAAAAGAATGGGATACGGTTGA 208 28 100.0 32 ............................ CGGTGCCGATGCGGCACATACAGCGGCTCAGA 148 28 100.0 32 ............................ GCAATTTCATCGACACTTGGTTCGCGTCTGCC 88 28 100.0 32 ............................ AGCTAATGTTGCGAGAGCTGTGCTCATTATTG 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTCACCGAGGTGCCGGTGCCGAGCATCACCACGCTGGTATTGGCGATAGGGATATTCCAGTACAGCGACTGATTTCCTTCTTCAGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACAGACTCTCTGCCGCAGTGATAGACAAACACCACCCGCGTAATAAAACGCAGGCTAATAATTCATTGAAAAATACGTAATACACTGGAAAGTAACGAAAATCAGCCTAGCACAGCCCAAACGGGAAAGGGAATGACGCCAGAAACACTTTTCCCGCTTCGATACCCTTTTTTTCAGCCGCCTTTTTCGGTATTGAAAAATCAATAAGTTACCGAGGACCGAAAAAAAAGGGTCTGACGGCGAAAATCGCCAATTGTGGGCCGGGATACAACGGGTTAGAGTCAACGAGCTACG # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9303-10172 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWY01000004.1 Dickeya fangzhongdai strain M074 Contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9303 28 100.0 32 ............................ AATGACCTATACCGCCTTGAGTTTTCCCTAGC 9363 28 100.0 32 ............................ TCATGCACGACCAGATTGAAAAATTTAGAATA 9423 28 100.0 32 ............................ TATACAAGAAGAATTCAATGCAAGGGGATGCA 9483 28 100.0 32 ............................ GTCTTCGCCGTGCTCATCCAACAGCACTTTGA 9543 28 100.0 32 ............................ TGGTGAACCCACTCATAACAGGTGCTCATTGG 9603 28 100.0 32 ............................ AATTCGGATTCTGCTGGGGACGCCATCATCAG 9663 28 100.0 32 ............................ ATACGCCGCTTTCGTGCTGAACACCTCCACGT 9723 28 100.0 32 ............................ GACTGACCGCGACACTGACCCCGCTGCGTGGC 9783 28 100.0 32 ............................ TGTCGCTGCAATAGCCCCAGCACTACCACCGC 9843 28 100.0 32 ............................ AGGCTAGCAAGAGGCGCCTGATGCCCACGGTC 9903 28 92.9 33 ...........CA............... AACACCACCTCGATAAACGACAGGCGATGTTCT 9964 28 92.9 32 ...........CA............... ACTCACGTTCAAACGCATCACGCAGGCGCTGC 10024 28 96.4 32 ............A............... TATTGCCGCCGGGGTCGTCTGCGCTTGAGCGT 10084 28 100.0 32 ............................ GTTTACCACCGCCCGTGCCAAAGGCCGCATCC 10144 28 78.6 0 ...........CA........AG...GT | G [10163] ========== ====== ====== ====== ============================ ================================= ================== 15 28 97.4 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGGAGCTGGCGGCGTTGGAGCAGACTGGCTGGCTGAAAGGGCTGCGCGACTATACCGCCATTACCGAGCCGCTACCGGTGCCGGCGGGGGCGAAGCACCGCACCGTGCGCCGGGTGCAGGTAAAAAGCAGCGCCGAGCGACTGCGCCGCCGCGCGGTGAATAAAGGCCGGATGACGGAGGATGAAGCCATCGCCCGCATTCCCTATGCGGTAGAAAAACGCACCTCGCTGCCGTACCTGCCGCTGCGCAGCCTCTCCAACGGACAAACGTTTTTACTGTTTGTCGAGCACGGTCCGTTGCAGGACAAACCGGTCGCCGGAGCGTTCTCCAGCTACGGGTTAAGCGCCGCCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGATCTAACGTATTGATTTTAAATACTGAACTCTGGCCGCCAGAAAAAAGGGTTTTTTCGTCAAAATAGCGTTTTTTCTTTAACAATCAGGTTATAAGCGATAATTCGCTACA # Right flank : TGACGGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGCTCCGGGAGAGCGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCCTTGTCGTGCGTGCGATGAAATAGTAGAGAGACGCGATTGTCTATCCCGCACGAAACCATCCACCGCCCCCGCATACATTCGACAAACACATTCGCCAGCAATACCCTGGCTGTTTGCCAACAGCCCCATTCCTGCACAGGAATAAAAAAATCCCCCAACCGTTATCGGCTGGGGGAAAAGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCAGCGAAGGCGGCAGCCACGCGCTGCACGTTGTGATGGTTTAAACCGGCGATGCAGATACGGCCGCTGGCGATAAGGTACACGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 15451-14947 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRWY01000004.1 Dickeya fangzhongdai strain M074 Contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15450 28 100.0 32 ............................ GTCATGTAGACCAGAGAACCAGCCGCCGTTGC 15390 28 100.0 32 ............................ GCTCAATTAATGGAGCAGGCAGCAAAAGAGGT 15330 28 100.0 32 ............................ GGGATGAAATCGCCCACACAACCAAATAACTC 15270 28 100.0 32 ............................ GGCTTATGGCGGTTAGCCAGTGTTATGCGGTT 15210 28 100.0 32 ............................ TCCTGATGCCCATCGCGTACAGTTATTGACAG 15150 28 100.0 32 ............................ TATATGCGGTCGCAGAACATCGCCATGACTGA 15090 28 100.0 32 ............................ CGGTCGATAAATACCACAAGTTTTCCCGCAGA 15030 28 100.0 28 ............................ CGACCACTTGGCACGATTGCCGATTACA 14974 27 75.0 0 ............C-.......A..TCCC | A [14949] ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.2 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACGGAAATCCCACCCATAGCGATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTATCCACTCTACTTTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCGTAATCACCATTGGCGCTCAGCGACGTGTACGGCTTATAGTCGCCGGTGGTGCACACCTTCAGCACCCCTTGTTCCTGCACCTGATCGAGATGAGACGCGGCGCCGGCGCTGCCGGCCAGCCCCAGTAACAGAATGAATGAAAACCGTTTTTTCATGATAGTTCCTTGCAAGTCACGCCTGTCTGGCAAAAGCGTCACTGTAGCACGCCCCTTCCTCGCCCGCCGATTTTGACCTTTTTTTTCGCCCGTTTATAACTATCTGATTTTTAAAGGTGGTAACGGTCGGCTTTAAAAAAGGGTTTTCGGACAAAAAACATCGTTTCTCTTTTAAAATCAGCCCACCAGCGATAAATTGCTACG # Right flank : GCTGATGCCGTTGCTCCGGCATCAGCGGATTCAGGTTTATTCTGCCACTAGTGCGCGAACCGCCCCTCTTTTCTTCTTGATGGCATAACCGGCGGCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGGATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGCATGTTAGTGAACGGGTAGCCCAGACTTTTAAAGCGGGTTTGCTGTTGCGCGCGCTGTTTGGCCTGACGGAATTTCAGATGGGTGATGCTGATCATCGCCCAGTTGATCACCAGCGCCGACACCACCAGCGCCATCAGCAGTTCAAACGCCTTGCCCGGCATCAGGTAGTTGAGCAGCACGCACAGCGCCGTCGCCAGCGCCGAGACACCGAGCGATACCAGCGGAATGCCACGGCGATTGACCGTCAGCAGCGCGCGCGGCGCGTTACCCTGCTGCGCCAGCCCGAACAGCATACGGCTGTTGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //