Array 1 110-1640 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZZI01000100.1 Pseudomonas aeruginosa strain HUM-331 NODE_90_length_1733_cov_38.7789_ID_179, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 110 28 100.0 32 ............................ GGTAGTAGGCCTGTCCCCCTGGCTTTCCATCA 170 28 100.0 32 ............................ AGAACGGGCTGGCCTGGTGGGATTCGCTCTCG 230 28 100.0 32 ............................ ATTTGCCCTGATACGGGAAGAGAGGAATCCAT 290 28 100.0 32 ............................ ACCAGCGCACCGCAGCGGCCTCGCAGAGTCCT 350 28 100.0 32 ............................ CGAAAAACCAAGAGTGGTACAACAAGGCTTCG 410 28 100.0 32 ............................ TGGGTGCGCTGTCCCTCGGCGCGGCCGATGTC 470 28 100.0 32 ............................ AGCAGTACGGGCGCACCTGCCGTCGCTACGAC 530 28 100.0 33 ............................ CTTCCGCGAACCGACTACACCGGCGAAACGGAT 591 28 100.0 32 ............................ TTTGTCCCTCCCGCTGCGATCACCTTCGCGAG 651 28 100.0 32 ............................ TGGTCGACAGTTGCCATGAGTTCGGGTTGCTG 711 28 100.0 32 ............................ CTGGAGGGCAAGACGATGCGAAATATCACTGG 771 28 100.0 32 ............................ AGCAGGCCGAGAACGATGTACCCGCGGGGCGT 831 28 100.0 32 ............................ ATCAACGCGTAGGAGAACCATCATGCTGAAGC 891 28 100.0 32 ............................ TGGTCAGCATGGTATCGCGCATGGGACTCCGG 951 28 100.0 32 ............................ TGCAAGGCTGAGGTCGAGGAGCACTCGCTCGC 1011 28 100.0 32 ............................ TACACAACAGCGAATCGAGACATCGAGTTCAA 1071 28 100.0 32 ............................ AGATGCGCTCCTGCAGCGCCGCGAACGGCAAC 1131 28 100.0 33 ............................ CTGGTGCCGGTGCGTCTCGAAGCGCGTGACTTT 1192 28 100.0 32 ............................ TTTGCCGCTGGGCAGCGCGACCCCGCAGGCCT 1252 28 100.0 32 ............................ ACCTCGACGACGGGATGACGCTCGAGGTGACC 1312 28 100.0 32 ............................ TGCTGCGGTCTCGGGCGTAGCCGCCGCTTCCA 1372 28 100.0 32 ............................ ATTGGCGTTGACGGTGACCGCGCGGTAGGTGC 1432 28 100.0 33 ............................ ATACTTACCAGTCGCTCCAGGCCCTTCTTTTCC 1493 28 100.0 32 ............................ GACGCCCTGGTGGCACGCCACCGCGACGAGAT 1553 28 100.0 32 ............................ ATCCACACCACAAGCCCCTGCGGCTCGTTCCA 1613 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : AACTCGCCGCTGTCGTGCTCGTCATCGTGCTCGTTCACTGTAGTGGTCAACCCATCCCGGACAGTGGGTTGAGTTTTTCTTCGGCCACCGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 110-1157 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZZI01000071.1 Pseudomonas aeruginosa strain HUM-331 NODE_22_length_108776_cov_26.3084_ID_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 110 28 96.4 32 .............C.............. TTGACCGAATTGGGCGGAGCCGCGCCGCTTGG 170 28 96.4 32 .............C.............. TGGACGCTGGCGGCACCAACGGTGAGTGCCAG 230 28 96.4 32 .............C.............. ATCTCTTCCTGGCTGTACTCCTCGTCGGGATA 290 28 96.4 32 .............C.............. TTGCTGGCGCGGATATGGATTAGGCGCCCCTC 350 28 96.4 32 .............C.............. AGGCCCTGGAGCAGCACAAAGAGCAGGGCGGC 410 28 96.4 32 .............C.............. GTTGGTTTGCGGGGCTCCGATCTGGCCCCGGA 470 28 96.4 32 .............C.............. CGAACACAGGGGCGCCCCATCCGGCGCAATCG 530 28 100.0 32 ............................ ATCGACGACATCACCGTCCTGGTGCTGCGCAA 590 28 100.0 32 ............................ TTGCGCAGCTCGTTGAACCAGCCCAACGGGCC 650 28 100.0 32 ............................ TCGACCAGTTCCGCCGGCGGCACCGGTCGGAC 710 28 100.0 32 ............................ TGCCGCTGCCTATGTTCGCGACATTCAGGTTG 770 28 100.0 32 ............................ ACGCACGGCGGCTGCGCCGGATTCGAGGTCGA 830 28 100.0 32 ............................ ATCGCGGTCATGTTGGCCGCATAGGTGCTGGT 890 28 100.0 32 ............................ ATTGGCGGCCAGGTCAGCCAGCGGCACCAGGT 950 28 100.0 32 ............................ ATCACGGCCACCCGAACACATCGCCGACCCAC 1010 28 100.0 32 ............................ ACCGAGAGGGGCGTTCAAATCCCGACCTTCAG 1070 28 100.0 32 ............................ GCGATCATCCCCGGAGTCGACGTCAATGCGGT 1130 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ATTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCGATCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10178-9071 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZZI01000088.1 Pseudomonas aeruginosa strain HUM-331 NODE_41_length_46523_cov_24.4253_ID_81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10177 28 100.0 32 ............................ ACAGAGCTTTCAGACTCGACGACGAGAGCGGA 10117 28 100.0 32 ............................ GAGGTAGACGGCAAAGAGTGCCCGATGACCCA 10057 28 100.0 32 ............................ TTGCCCAAGCCCTGAGTCGTTCCGCGCATGGC 9997 28 100.0 32 ............................ TTTATCGGGCCGGAGTTCACGGTCTACGGCTT 9937 28 100.0 32 ............................ GCAGTGGCTGGCCTGGGACGGTGACTCTTGGC 9877 28 100.0 32 ............................ ACCAGCGCACCGCAGCGGCCTCGCAGAGTCCT 9817 28 100.0 32 ............................ AGTCAGGCAGTAGCGGCCGAGCTTCAGCGAAG 9757 28 100.0 32 ............................ CGAAGCTGACGCTAGTTGCGATGTGTCTGGCT 9697 28 100.0 32 ............................ TCACAGGGGCGATCGAGGCTCCCCCCCTGGCT 9637 28 100.0 32 ............................ TGTCGCAGTACGAGGTTCGGTGTGCTGCCCCG 9577 28 100.0 32 ............................ TGCGCGGGCTGGTCGACAAAGCCGGAATCAGT 9517 28 100.0 32 ............................ CATTCCACTCGGCCGGGATCGGCTGGCCGTTG 9457 28 100.0 32 ............................ GCGCCCTGCTGAGCGAGCAGGAGGGAGGGAAG 9397 28 100.0 32 ............................ CAGCAGGAGAACATCGACACCGCCGTGCGGCT 9337 28 100.0 32 ............................ AACGGAACTACCCGCACGGATGCATCGAACGT 9277 28 100.0 32 ............................ ACCAGGATAGGATCGACCTCGGCGCAGTACGC 9217 28 100.0 32 ............................ AATCGCAGTTCCAATGATCGGAACGACAGATC 9157 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 9098 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGCGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //