Array 1 336842-336094 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFJ01000033.1 Photorhabdus luminescens strain HIM3 NODE_3_length_384075_cov_15.9029_ID_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 336841 28 100.0 32 ............................ TGTGGAATTTAGATATGAATGTTTGTCATTAA 336781 28 100.0 32 ............................ TCGGAATAAAGGCGGGCACCACTGGCGACATC 336721 28 100.0 32 ............................ GGTGCGTTTATTATGAAGGGCATTGTTCATAA 336661 28 100.0 32 ............................ ATATATCTGAGAGTGTGCCCCTTGGGGCACGG 336601 28 100.0 32 ............................ AAACGTGGCCGCCAAAACCATGAAATGTTTAC 336541 28 100.0 32 ............................ TTAGCGCTTGCAGCGGCTAAAGCCGCGCCGCT 336481 28 100.0 32 ............................ ATTGGGTACCTGAATGGATGAAAACTGAAACA 336421 28 100.0 32 ............................ GTACATAGGCGGAGCATTCTGCACTGACAGAC 336361 28 100.0 32 ............................ TACAGTCAGTCAAGCAGCAACTATTAACACAG 336301 28 100.0 32 ............................ ACGAGATTACGGCGGATTGCTGACGACAATTT 336241 28 100.0 32 ............................ TTCATAGTTGCTATCCGTGAAGCAATTGTTAA 336181 28 96.4 32 ............G............... TCAGGATGTGATTTTAGAAAAGTCTGATGGAA 336121 28 96.4 0 ...T........................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGTTGATGTATGAAGCTTTACAACCCGCTATCCGTTATATGCAACGTCAACAGGGGATGCATCGGGTTATGGCTAATTATATGCCGGATAACCATCGTAGTGGGAAATTGTTGGAGCGATTGGGTTTTGAGCGTGAAGGCTATGCCAAGAAATACTTGATGATTAATGGAGTCTGGCAGGATCACGTATTAACCGCATTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAGTTAGTAATGATGAATTAAATCACCGTTAAAAATCTGCTTTCTCCACACCTTATTTTTGACCCTTTTTTCAGGACTGATTTTAATTTATTGATTTTTAATAAAATATTATTTCTCTTGAAAAAAAGGGTTTTTTCATTGTTTTATTAAAATATGCTTTGACTGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : TTAGAAAGGATGAATGTATCTGGAATATAAATCAGATCTTTTCTCAAGAGTTCTATCCTGAATAAGTTGCAATTAGTTGACTTATTTGACGCACTGACTTCGGTTGGTGCGCTTTTTAAAGTGGCTATTCGAGCTTTTTGTAGTAAGGCTAGTTGCAAGGTGCTACTAGAGAGAATTTTGAATCTGTAACGTTATCAGTTAAGACAAGCGCCAAATTTTGCTTTTTCTTATGGTAAATAACAGTTAAGAGATTATTATTTTTGGAATTATAATGAGTGATAAAATAATTTAGTATCTTTGGTAAATTCACATAATAAGTGTAATATTGTTACTTTGGAAGTAAATATATCCGTATTTCTTTAAATAATTTATTGGGAATTTTATTATTGTTGACTGATTATTATGAGGATAATTTTAATGATTTTTTTGAATTCATAAAAATAGACGTTATTCTAATTAGTCTGTTTAATAAATATTTAAGTTATATTTCATGATTATTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19629-19062 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFJ01000025.1 Photorhabdus luminescens strain HIM3 NODE_1_length_706123_cov_17.022_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19628 28 100.0 31 ............................ GGTCACATTTCGATGTGGCCTTTTTTATAAT 19569 28 100.0 32 ............................ AATCGTCTGACATAAAGTCACCGGAGTGCTCT 19509 28 100.0 32 ............................ CGCGATAGCAATAAACCCCGCTTTTTTGCAGT 19449 28 100.0 32 ............................ CTACGGAATGAGTTGTGGGTATACCGAAGCGG 19389 28 100.0 32 ............................ CGAGGGTTTTGTCGCAATTGCATTCAGTGGAT 19329 28 100.0 32 ............................ TCCCAATCCCCATCTATTGAGCTTTAAATAGT 19269 28 100.0 32 ............................ AGGATGAAGAAAGATGTTACCCAGATAGTCCT 19209 28 100.0 32 ............................ ATAAACAAATTACAGGGCATGGTAGTAATCAG 19149 28 100.0 32 ............................ ATAGCGTAATTTTTGAGAGCATTCCAGTAGAT 19089 28 96.4 0 ........................T... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTGTACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGGTATTGATAGTGGTCGTGGAGTTTTAACTCATCAGGGGGATGCTATTAGAAATATTCAGGGCTCGTTTCCTGGGGCAATAACATATGGTTTTGAGCAGGCAGCAAAAGGGGTTTTTTATGGTAGTGCAAATTTTGGGGTGGGTACAGACGGCAGTGCTAAATCGGTAGGTCATTTTACCCCAGATGTTGTATACACTGCATACGGTTTTGGGTTCGACGCGTCAAGGGTTGTTCCTGTAGCACCAGAGAACCGCCCCCGCAACATAGCCTTTAATTACATCGTGAGAGCAGCATGATGACTGAACAAAATACCCTTTAAATCAGAAACAGAAGTAGAGGTTGTTCTACTTGGATGGAGGGAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAGTAAATACTATTTGTCTCGTAAAAAAGGGTTTTTTATTTTTTATAATGATTACTCTTCAACATTCAGTAGGTTGGGGTTAATATGTAACA # Right flank : GTCAGCACTCTCATTTACCGACCGTTTTCAGAACTGGCGACTTAAGTTCTATTGATGAGAACAGTGAATGTATGTTTTATGAAGATGGAGAGTTCTGTGGCATTCCAGAATACTGTCGTTTAGATGTTTATGCCTAAATTTCGTAAGATTCATCTTGGAACTTAAAACAAAAGGAGTTGCTGGAATAGATAGAATATATAAGAGAAAAATAGTTTTCAGATGTTAACTATAAATGGTTTGGATATATTTTCGATTCTAAGATATTGAATTATTTATTGCTGACAATTATATAAAAACAGTCAATCTTCTAATAAATAGGAATGATGTATTGCTCTTCTTTATGAACTAGACTCTAATTTGAATAAATTACAGTCGGATTATTTTTATAATTATTAAATATGTTGATTATAAAAAATATTATTTTTCTTAAGGAGGAAGTACATGAGTCAAAAAAATGATTTTAAGGCTTTTTCTATTAGCAATAATGCTAATGTAATTAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 235653-235445 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFJ01000025.1 Photorhabdus luminescens strain HIM3 NODE_1_length_706123_cov_17.022_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 235652 28 100.0 32 ............................ GATTTGCCGCGATTTCAATATCATGCGGTTAC 235592 28 100.0 32 ............................ TTTTTCCACGTACCCCCTCGTTTAAAATAGAT 235532 28 100.0 32 ............................ AGATGCGATGAGAGAAGCGGAATAATCAGTAG 235472 28 75.0 0 .......A............AGGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGCGCTGAATGACTTACAAGCATTATCCTGGTTAAAAGGGCTCAGGGATTATACTGAGGTGACTGATATCCAGCCGGCCCCTCAAGATACTCGATATCGTCGTGTGAGCCGAGTGCAGGTAAAAAGCAACGTTGATAGGATTCGCCGTCGTTCGATTAAAAAAGGATGGTTAACGGAAGAACAAGCCCGGCAGCGTATTCCTATTAGCAAAGAGCAACGTACCAATTTACCGTTTCTATACCTTAAGAGCTTGTCATCAAGACAAAGCTTTCCGTTATTTGTCGAACAAGGGCCAATACAAGACAGCCCAGCGTCAGGCGTTTTCAGTTCTTATGGATTAAGTTCATCAGCTACCATTCCTTGGTTTTGACCCTTTTTTTGCGGCTAATTATAACTTATTGATTTATTTAAGGAATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : TCGATTGAGTGCGCTAGAATAAAGAAGTCTATTTTCTACTTGATGAGCATCAATTCTTATGCTTCTGAGCATACGTTTCACTATTAACCCATTGATGGTCTTTTTCCCAGGTAAATAACCACTTACGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCTACTGGGTGATAGCCTTTGGGGACCATTACTACATCTTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACGCGTTGCATGCAGAATCCTTGAGATGGGTTCAAACGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAACTGGTACAGCCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTGTTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAGCCATTTCCACGTTGTTCTGCACCAATA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 247904-247516 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFJ01000025.1 Photorhabdus luminescens strain HIM3 NODE_1_length_706123_cov_17.022_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 247903 28 100.0 32 ............................ AAACAGTGTTGCAACTATCGGAGACGATGATC 247843 28 100.0 32 ............................ AGAACGCTGACTAACAATACACTTAACTGTTA 247783 28 100.0 32 ............................ TGTTTGATGGGTGTAATTGGGCTGTGAAAGAT 247723 28 100.0 32 ............................ GGAGGAAATTCCGAACGCCTCAATACCACTTG 247663 28 100.0 32 ............................ TATACTGTAGGTAGCTGTATCAGCCATAGGAT 247603 28 100.0 32 ............................ ACTTATCAAAAGTGTATCCAAGTGGGATTATC 247543 28 92.9 0 .........................GT. | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTCTTTGGTTGCAACTTGGTGTTATTAATGAGCAAGCAAAAGCGTTGGCAGAGGAAGCTGGTCTGGATGTTGTTATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTAGGACTCGAAAAATAATATTTTTCAGTTTGGATTGCTTAGTTCCTCATCGGTGGATGGAGGGGACTTGGCAAATATCCAATACAGACTTAAGGGACTGGATATTCAGCGGAACTTACTTCTCTAAACATCTTATAAAATCTATTTTTACAGTTATTACAATACATTAGGTTAGTTTAGTTATTTTAATGACAGCTAAGTTTGCCAGAATCTACATTTTTGTTGCTATGAAGATAAGGCATTTTTGCTGTACTCCAGTTTTGACCCTTTTTTATCATCAAAAATTAACCTATTGATTTAAAAGAGAAATAAAATATCTCTTCAAAAAAGGGTTTTTTCATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAAGTTAATATGTAACA # Right flank : GCTTAAAAACACGATAACTGCCTTAGGTTGTTTAGGTGTAAATGTGGGATTAATTGCGCAGCCTTGGTGCCAGTAACTGATTGCGGATGGATTCTGCTAGCTCATCTAGAGAAGGTTGCTCTGGATGTTCATCAGATGTTTCATAGGCTAATTGTGCTTCAGCTAAATAAGTATGTACAGGTTGGCCGTTGTCATCTTCCATCACAACGTGATACCAAGGAGCGGAACGCAAAGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGGTCCAGAGAGTATTCCACATCAATATCCACGATGACTCCTAAATAACCAAGAAGCTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGATCTTGCATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTGGTTGAAGTCTTTTTTGCTTTAATTGCGAGCGTGACTTCATCTGTTTCAGGTTAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //