Array 1 1888847-1888269 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016000.1 Burkholderia sp. KK1 chromosome II Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1888846 28 92.9 33 ..........T...T............. GTCGTTTTCCTGCGCGGACGGGAAGGCGATTTC 1888785 28 92.9 33 ..........T...T............. CGTCAAGCTCGATCGCATCGACCAGAAGCAGAT 1888724 28 96.4 33 ..........T................. CCACTGCTGCTTGCAGTGTTTGACGTACACCCG 1888663 28 92.9 33 .A.........C................ CAGCCCCGGCAACTGCGCAGCGGTCACGATTCA 1888602 28 85.7 33 ...C......T...T.T........... CGACTGCGTGACGTCTAGCTTGATCACGACACG 1888541 28 92.9 33 ..............T..T.......... CATGGCGCACGATCTGCGCGTCATGCGCGATGT 1888480 28 100.0 33 ............................ TTGTCAAGGGTGTTCAATGCGTTTAGACCCTTG 1888419 28 100.0 33 ............................ CAAGCTACTTGTCGGCTACTTGATCGCGTTCGT 1888358 28 92.9 33 ...........AC............... GTTGCCGTTCAGAATGGGCGACTGAGACTGCCT 1888297 28 85.7 0 ...........C.A.A.........C.. | T [1888271] ========== ====== ====== ====== ============================ ================================= ================== 10 28 93.2 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : CGGCGCGAGGCGGCGCGCGTGTTTCGCAAGAGAGCGGTCATTCCCGCGATGATCGATCGCGTGAAGCAGGTATTGCGTGTTGATGAGAAGCGGGAGGCGGGCGATGGCGCTGGTCGTCGTGGTGACGAGTGATGTCGCGGACCGGTTTCGGGGATTTCTCGGATCGGTGATGCTCGAAGTATCGGCGGGGTTGTATGTCGCGCCGCGTATGAACAAGGGTGTGCGGGAACGGACGTGGTCGGTGCTTGCCGACTGGCACGGGCATGAGCCGCGCGGCAGTGTGGTGATGGTGTGGCGGGATCTGGATGCGGTTGGGCGGATCGGTATCTCGCATCTCGGTGCGCCGTCGAGAGAGCTTGTGGAGGTCGATGGGATGTATGTCGTCAGGCGGATGATGACGGTGGGGTAGGTGGGAGTGGTTTCGTTCTTTGAAAATTTGGATGGTTTTACTGGATGCTAATGGGGTATTTGGCTTTTCTGTCATGGGGTTGTGAGGGAGA # Right flank : CCAACGACTGGCACCTCACCCCACAACCCCAACCCCACCCGCTCCACCCACCTCCCACCGCCCGCGCCCTTCTCCCACCCGCCACAAAATAATCCGTACTCACCCTCTCCAACCCCGCCACACCCCGAATCCGATCCGCGATCTTCTCCGCCAGCATAATCGTCGGCGCATTGAGATTGCCGGTCGTGATCTGCGGCATGATCGACGCATCCACGACGCGCAAGCCTTCCATCCCGTGCACGCGTCCTTCGCCATCGACGACGGCCATATCGTCATAACCCATCTTGCAGGAACAGGACGGATGAAAAGCCGTCTCCGCCTTCGCGCGCACGAACGCATCGAGCTCGGCATCGCTCTTGAGATCATCGGAAGGATGAAGCTCGCGCCCGCGATACCGCGCCAAAGCCGGCTGCCGCATGATCTCCCGCGTGATGCGAATCGCATCGCGGAACTCGCGCCAGTCCAATGTATCGGCCATGTAGTTGAAAAGAATGCCGGGA # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : GGTTCCTCCGTGTGTGCGGAGATAGACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [7-7] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 527348-527558 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015999.1 Burkholderia sp. KK1 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 527348 28 96.4 33 ....G....................... CGCGCGTTTCGCAGGAGGCGCCGCGATCAACTG 527409 28 100.0 33 ............................ TTTGTGTCTCGAATGGGGGTGGATTGATCGCGT 527470 28 100.0 33 ............................ CGACCATTCCCCGACGGGCAGAGCTGTGTCGTC 527531 28 89.3 0 ..C..........AC............. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 96.4 33 GTTTCCTCCGCGTGGGCGGAGATAGGCC # Left flank : ACGTGAGTCCGCAACAGATCGCGGATGTGATCGGCATTGCGCCTCGCTTGCCCGATGGTTCGGATGCGACTGCGCCGAGGGCGTCGGGGACGTTGAAGGCGCATTACGCGCCGAGGACGCCGCTCGTGCTGCTGCCGTTTTCGGCGATGGAGCCGCTGCTTCGTCGTGATGGCGACAGGAAAATCGCGCTGGTGGCGCGGGCTTCGAGCGCGGGGGAGTGGGCGCGTGCCTCGCATGTTCACTTCGTGGCGGCGCCGGAAGATCCGCAGTCTTATGCGCGGGATCTTTATGGTTTGCTGCGCGCGCTCGATCGGGCGAATGTGGAGCGGATTCTGATCGAGAAGCTGCCGGAGACGGTGGAGTGGATTGCGGTCAACGACAGGCTTGGGAGGGCTGCGGCGGCGTTTGAGGCTGAGGAGTGATTCGCTGCGGGTTTTGGGGTGAATGTGAAGATCGGTTGTCGGGATTCCGCTTTTGGATCAGTTGGTTATGATCGAGGG # Right flank : CCCCGCGCATCGAAGTGCGCATTCGGCCGATGCAGTTTCCTCCGCGCGCGGAGTCACCCCCGCCTGACGATTGGGCTCCCCCAACTTCCGCGCAAACCCTCCGCCTCGTAACGGAGCCCTCCAAAAAACAAAAACCGCCCGGACAATCCCTCATCCGGGCGGCTTCCCCATCCTCAAAGAGAATCGCTTACTTCCCCAACCCCGATTTCGCCACCACCTGTTCCGCCGCTTGCGCATACAACGTGCCCAGATGCGTCGTCGGATGCACGGTATCGGCGTACATGTAGGTCTGATCCGCGCCTGCCACAGTCAAAGTCTCCGGCGAGCAAAACAGGGAAGTCGCGAAAGCGGCCGGGTTGGGTTCGCCAAACTTCTGCGCTGCCGCCGCCATCGCCTGCAGATTACAGGCCGTGCCGGTATTCGACACCGTGAATCCGAACTGCCCAAAATTCGCCGTGACATTGGCAAGCACCGGCACGATGTCGAGATAGATCACCTTC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCTCCGCGTGGGCGGAGATAGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 730985-730225 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015999.1 Burkholderia sp. KK1 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 730984 28 92.9 33 .A...........G.............. TCTCTGGGTCTATCAGGACTGGTATCGCGACGA 730923 28 96.4 33 .A.......................... GCTGGATCTCGCAGTCGCGCGCGCTGTCTGCGA 730862 28 96.4 33 .A.......................... GCATCGTCCAGCGCCGCACCACCGAGGCCCATC 730801 28 96.4 33 .............G.............. CTCGGAGTTCCGCCCGGACCTGAGCGAATTGCT 730740 28 100.0 33 ............................ CAGCGCATGCTCTTATTCCCAGCGCGCGACATT 730679 28 100.0 33 ............................ CGATTTGATGGCGCTGAAAGAGCGCGCGGCGGC 730618 28 100.0 33 ............................ CGTCAAGAGCAAGCAACAGCTACTTGACTCGAT 730557 28 96.4 33 .........................G.. GTGGCAACTGTCGCCACACATGACAAAGAGTGA 730496 28 92.9 33 .............G...........G.. GGTCTTCGACAAGATGAATGCGCGCGCCGAGAG 730435 28 89.3 33 A............G...........C.. CAGCGCACGGCGCGCGGTAACGCGCAGTTCATG 730374 28 92.9 33 ..........T..G.............. CGGTTTTGCTCGGCGCGAGTGAGAGCCACGGAC 730313 28 92.9 33 ...........A.G.............. CGGCACCTACACGATGATCCTCAACGACTGCGG 730252 28 92.9 0 .............G.........T.... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 95.3 33 GTTTCCTCCGCGTACGCGGAGATAGACC # Left flank : TTTCGGGGTTGCCGCGCTCATCGCGCGCTCTTGTGGCGAGCGCGCGTTTGTGTTTTAGTGGCCCGTTTTCGAACTTGCCGGAGCGTTATGACCTTGCATCGATTTGCCTTCTTCTGCGCGGCGCTGTCGGGCGCGGCCGCCCTTGCAGCATGCAGTTCGACGAGCGAGCCGGAGTTGCGCGCTTCGAAGCCCGTGATTCACGTTTCGTCGGCGCGGGCGGCGTCGGATATATCGAGTTGTCTGCAGCGGATGATTCCATCGGCGCAAGCGAGACGCGATCAAGGCTCGACGGAGTTGATGGTCGGATCGAATGCATGGCTCGTGACGCTGACGCCTTCGGTGTATGGATCGGTGGTGAAGGTGCAGCAGTCGTCGAGCGACGATGGTGGCGTGCCGGAACCGGAGCTTCGGTTTGATATTGCGAGGTGTACGACTTGAGGGGTGTTTTCTAGGATGGGTTGGGTGATTTGGTGTTTGGGATCATGAGGTTATGATCTAGG # Right flank : CTAAGTGATCTGTTCGCCCCACTTAGTGAGCGCGCTTCCTCCGCCCCCCCCGCCGGAGCCCCAAAACAAAAACCCCGCAAGCCTGACGACTTGCGGGGTTTTCAGATTTTGGCGGAGAGGGTGGGATTCGAACCCACGGTACGGGAAAACCGTACGCCTGATTTCGAGTCAGGTACATTCGACCACTCTGCCACCTCTCCGGCTACCAGTTCATTTGACAACTTACTGGCCTTCGTGAGCCGGTCGTTGCTCAACGAAGAACGAAAGTATATCGAACTCTTCCGACCTTTCCAAGCCCCTTTTTGCAAATAGGTGTCAAACGGAAGCGGTGACTTCGATCCGTTCCGCGCCGCGCATGTACGGGCGCAACGCGGCGGGAATCGTCACCGAACCGTCCGCGTTCTGGAAGTTCTCCAGCACCGCGACGAGCGTGCGCCCGACCGCCAGCCCCGAGCCGTTCAGCGTATGCACGAACTCCGGCTTGCCCTGCGCGTTGCGAA # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCTCCGCGTACGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //