Array 1 37777-38643 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSRF01000024.1 Pseudomonas aeruginosa strain DUN-003B IPC995_24.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37777 28 100.0 32 ............................ TTCGAGGATCAGCACCGTATCCATCTTGCAGC 37837 28 100.0 32 ............................ AGCTATACCCAGCCGGACAGCCAGGGTCGTTC 37897 28 100.0 32 ............................ AAGAGTCGCGGCGACAACTACCAGACGTCCGC 37957 28 100.0 32 ............................ CTGCCGAAATATCGACATCATGAGGGCGAAGT 38017 28 100.0 32 ............................ TTGCTGAGTGCATCTTCGTATCGCTGGATGCG 38077 28 100.0 32 ............................ AGGCCGCCTGGGGAGCTGGCTCGCGACTGTAC 38137 28 100.0 32 ............................ ACCAAGCATCGGTGCTCACTACGTGAACACGA 38197 28 100.0 32 ............................ TGCCCGGCGTGCTGCTGCCGGAGCTGGCCGGC 38257 28 100.0 32 ............................ AAGCGGCTGCATAAGGACCCGGACAATCCGGA 38317 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 38377 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 38437 28 100.0 32 ............................ AAGACGAGTACCTGAAAGACACCACCGGCAAC 38497 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 38557 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 38616 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCCGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCTTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48034-47165 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSRF01000024.1 Pseudomonas aeruginosa strain DUN-003B IPC995_24.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48033 28 100.0 32 ............................ AGCAGGTCGCTGCGGAAAAGCGCGCGGCGGAA 47973 28 100.0 33 ............................ AAGCGGTGTTTCCTGCCTGGACAGCGGTATTCA 47912 28 100.0 32 ............................ ACCAAGCGCAACGCAGACGCCGAAGCCCAACA 47852 28 100.0 32 ............................ TGCTCGTATCCGTCGCCTGGGTTCCCGTTGAC 47792 28 100.0 32 ............................ TGGACCGAGCAGCGGCGACTCAGGGAGGGCCA 47732 28 100.0 32 ............................ TTTCTGGGAGTCCAAGGAACTGGCCAAGGCTC 47672 28 96.4 32 .....................C...... AAGTACGCTTTGCCTTGGCAATCGCTTCCGTG 47612 28 100.0 32 ............................ TGAGCCAGGCCCTGAACATCGCCATCGGCGTG 47552 28 100.0 32 ............................ TGCCCGACGTGCTAGTAAGGCTCACTAGCTGG 47492 28 100.0 32 ............................ AATGACCTGGCCGACATGGTGGCGGCTGGTGC 47432 28 100.0 32 ............................ TTGATGCCGGCATACACAGCGGCCAGCAGCGC 47372 28 100.0 32 ............................ ACCCGTAAGACCCGAGCCGCCACCAGTACCAC 47312 28 100.0 32 ............................ ATCAGCCACGCCTTCACCGGTAAGCCCGGCCG 47252 28 100.0 32 ............................ TTTGAGTGAGCGGTAGTGCGCTATGCGTGAGC 47192 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCATCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 218-1385 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSRF01000017.1 Pseudomonas aeruginosa strain DUN-003B IPC995_17.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 218 28 100.0 32 ............................ CTCGATTTCGGGCATTGGGGCAAGCCGGAGCA 278 28 100.0 32 ............................ AGGAAAAGCTCGCACGCTGCGCGGATGAAGAG 338 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 398 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 458 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 518 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 578 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 638 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 698 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 758 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 818 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 878 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 938 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 998 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 1058 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 1118 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 1178 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 1238 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 1298 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 1358 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCCTCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //