Array 1 76664-75668 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHOC010000044.1 Bifidobacterium longum subsp. longum isolate B.longum_ssp_longum, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 76663 36 100.0 28 .................................... TTTTCTAAGGCCCGGCCTGGCTTCATGC 76599 36 100.0 28 .................................... AGTGGTATGTATTGGGATGCTTTTTTGT 76535 36 100.0 29 .................................... AGATATCGTCGAGCGTGTCATAGTCTCCC 76470 36 100.0 28 .................................... CATAGTGTAACCTGTAGTTACAGGCAAA 76406 36 100.0 28 .................................... TCGTGTCGGTGCCGGCCATCCAGCCGAG 76342 36 100.0 28 .................................... TTCTTGGTCGTTCCGACTACGCGAAGCC 76278 36 100.0 28 .................................... CACAGTCCACATAGTGCCATATATGGGA 76214 36 100.0 28 .................................... TGGACTTGATAGGGGTAGCCGGTTCTAC 76150 36 100.0 28 .................................... GCATGGGAAGACTTGCAACGAGATGGCT 76086 35 97.2 28 ..........-......................... ACATGACAGTAAATGAGCTCCTCAGGAG 76023 36 100.0 28 .................................... GACGCACCCAAGACGAGCGTATCCCTGA 75959 36 100.0 28 .................................... CGACTGTCGCCGCCTCGCCGAGTCCGAA 75895 36 100.0 28 .................................... ACAGAAACGCAAAGAAGCTTGCTGGAGA 75831 36 100.0 28 .................................... TCGTCCACGCATGCGTGCGGCCGCCCAT 75767 36 100.0 28 .................................... ACCTTGACGTAGCCATTAGTGGTGTTGG 75703 36 97.2 0 ..........................G......... | ========== ====== ====== ====== ==================================== ============================= ================== 16 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAAAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : ATGTCCACCTGATTACCATTGCGACAAGTGCGGACTGTCCATCGACCGTGATTTGAACGCGGCCATCAACATCCAAGTCGCCGGGGAGTGCCCCGGAGACGTTAAATGCGCGTGGAGGAAGCGGAAGACAGACCCGTCCCAAGGGCGGGACAATGCGGCATCCGGCGAAGCGTGAACCAAGCGGCGGCGAGAGTCGCGTGAGACTTGGAGCATGGCCTCGGCAACGAGGCCATGCAGATGACTTCGCTCTAGCGACAAGCTAAAACAAAGTCATCTACAACGGTGCGGAAAACAGAGACATGACGGCGAATGGCAGTGCGCACATTGCGTACAGTGTGGTGGCTCTGAGCGGCAAGGATTGTGCCGAGCCTTTTTCGTTGCTGGATTCGTGGGCGGCGGGTTGATTGCTGTCTGTGTTTGCGGTCCGTGACGCATCAGGCATATGCGCTGCAATCAAGCGCAAAACATATGCCGGCGCAGTAATCAGCAAAATAATGATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 227-8869 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHOC010000007.1 Bifidobacterium longum subsp. longum isolate B.longum_ssp_longum, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================== ================== 227 29 100.0 32 ............................. ACGTCGCTTGTGCGGCAGATGGCACGTCGTGA 288 29 100.0 32 ............................. TATTGGAATATGCCAAAAATATGAAAACGCAT 349 29 100.0 33 ............................. TAATTCAAATCCAACGGGCCGTACCCCGACACG 411 29 100.0 32 ............................. GTATCCGAACCGGCTGATGAAACCACCGCACG 472 29 96.6 32 ............................T TATTGCATTAGCCGGAAGGCACGAAGCCAGGC 533 29 100.0 32 ............................. CTCACACTGACCAGCGTTTCCAAAAAGGTTGA 594 29 100.0 32 ............................. AATGGGAAGGAAGCAAAATGAGTTTTGAGTTT 655 29 100.0 32 ............................. AATAGCACACTTGCAACATGATTCACAACGAC 716 29 96.6 31 ............................C CTTGCGCAAACGCAATGTTTTCGGCAGTGTC 776 29 96.6 32 ............................T GAGCTGATGAAAAAAGCCGAGGAAAACATTAA 837 29 100.0 32 ............................. CAACAGAGCTTGCAACCGATATCGCAAACGGC 898 29 100.0 32 ............................. TGCCCGGACACTCAGTGGCGGAAAAATCACGG 959 29 100.0 32 ............................. ACCGTCAACGAGCTTGTTGATATGGTCGAGAG 1020 29 100.0 32 ............................. GAGTTTCAAGGATGACCGACATCTACGGATAC 1081 29 100.0 32 ............................. AAGCTGGAACTGCTTGTAGGTGCGGTCACCCG 1142 29 100.0 32 ............................. TACAAGCTAGTGTATCAAGCCCTCGAAACCGG 1203 29 100.0 32 ............................. ACCAGTAATGCCGAGCATTTGTATACGCTGAT 1264 29 100.0 32 ............................. GGCGTGTCGCTGCCTTTGTAGCTGTAGGACCA 1325 29 100.0 32 ............................. AAGTGGCCACGCCAGCGCAGCCGGGACAATAC 1386 29 100.0 32 ............................. TACTAGCACGGTCAAAATCAACCGTGATGTAA 1447 29 100.0 32 ............................. CACGTCGCCCGCCGCAACGTTGTCGGTCGCCG 1508 29 100.0 32 ............................. GTGACGGGCACCGCGACATACATTAACCCGAA 1569 29 100.0 32 ............................. TACCGCAGTTGCAATGCGGCCGGCCTCCCCGC 1630 29 100.0 32 ............................. AAGTGGTGAGCTGGGGGTGGGGTCACAGCTGT 1691 29 100.0 32 ............................. CGTCCGAAGACACCGCGCGTGCTGTACACGTA 1752 29 100.0 32 ............................. CACAGGACGTCATGAAAGCCGATTACCACGTG 1813 29 100.0 32 ............................. GTCGCCTCCTGCGGCTGGGCTTGAACCAGCGA 1874 29 100.0 32 ............................. CGCGTCCCCGCGAACGATGCCGAAGGCGAACG 1935 29 100.0 32 ............................. TCGCTGTGCCGACTTCTGATTTTGATGGTAAC 1996 29 100.0 32 ............................. GGACCAGAAAGGGCAATGCGAACGATTCACTG 2057 29 100.0 32 ............................. TCGCAGGCGTCATCACCGCCGTATCCTCCGCA 2118 29 100.0 32 ............................. TTGCCGGTGTACGCGCCGTTGGCGAGCATGGC 2179 29 100.0 32 ............................. AATCCGATGATGTTGTTCACGCACGAGCCGAT 2240 29 100.0 32 ............................. TCGTCGCCGATGGTGCCTTCCATCGTCCATGT 2301 29 100.0 32 ............................. ACGTTGGCAATTCATTTACTTACGTCGGACTG 2362 29 100.0 32 ............................. CACTACCACGGGATAGTGCAGTTACCGGCAGA 2423 29 100.0 32 ............................. GGTAGCGTTAAAGCGCCTAGCAATTCGGACGG 2484 29 100.0 33 ............................. TCTGGGGGGTCGTATGACACTATTTTTGGCGAC 2546 29 100.0 32 ............................. GACGCCGAGAACAGGTCGGACGGTATCGTCAC 2607 29 100.0 32 ............................. CAGTTTGGTGGTGTCGTCCTGCTGGAGCTGGA 2668 29 100.0 32 ............................. CAAGGCCCTGTATCGTCGGACGCACGATATGC 2729 29 100.0 32 ............................. TGCCTTCCACCTTCGCGAGCATCAACGACGCC 2790 29 100.0 32 ............................. GGTTTGCCGGGACGCATCACCAGCGCCATCGG 2851 29 100.0 32 ............................. GCCAGACGCCGTCCATGTCGACCTGCGTGACC 2912 29 100.0 32 ............................. AACGCATCGTTGAAATGCACTCTGACCTGTCC 2973 29 100.0 32 ............................. AGGGCGCATAGAAGCCGGAACCGTTGTAGGTG 3034 29 100.0 32 ............................. AAGGCCGTGGCGAAGATGGGCGCGACCTATAA 3095 29 100.0 32 ............................. CGAATGATAAAAAAACTCGCCCGAACGAATCG 3156 29 100.0 32 ............................. CGAATGATAAAAAAACTCGCCCGAACGAATCG 3217 29 100.0 32 ............................. AAGGAATAGGAATCCGCGCCGACTTCGCCCGA 3278 29 100.0 32 ............................. GTCACCGACAATATGGCCGAAGACCTCTCCTA 3339 29 100.0 32 ............................. GATGATTTCACGCCCGAATTCATCGAACCATT 3400 29 96.6 32 ............................T GATCGAGACGTTCGAGAAAGGGGAAAACGCAT 3461 29 100.0 32 ............................. CGAACTCACCTTCGTCTCGAGCAGGTGGGTCT 3522 29 100.0 32 ............................. ATTTCCCACGATAAGGCAGAGGAGGTCGTCAA 3583 29 100.0 32 ............................. TCCTGACTCACGCCACACCTCCTATACCACTG 3644 29 100.0 32 ............................. AATTGCAGTACCGTTGGTATTGAATCTTGTTT 3705 29 100.0 32 ............................. CCGCCACTGGCATGTATGCGAGTGACGCCAAG 3766 29 100.0 32 ............................. TCAGGTAAGACTTCACAGGCGCACGCCACTGC 3827 29 100.0 32 ............................. GAAATTTATGCAAAATTATATAGCACCATTTG 3888 29 100.0 32 ............................. GACGGCAGTGCAGATTACGATAATGTACGCGA 3949 29 100.0 32 ............................. TTCACTATCTCCGCCAAAGTCAGCCGCACTCT 4010 29 100.0 32 ............................. CCACGTCGCCTTTTTGCGGCGTGATGCTGGGC 4071 29 96.6 32 ...................C......... GCGTGTTCGAGTCGGGGACGACGGTATGGGCC 4132 29 100.0 32 ............................. CGTTCATTACTGTAGCTGAGAGACAAGGGGGC 4193 29 100.0 32 ............................. GCGCCGACGTGCGTGACAGCTGGATCAAACAG 4254 29 100.0 32 ............................. ACCAAGCCAACCGATACGGGCTGGCCCGCAGT 4315 29 100.0 32 ............................. CCGCCACTGGCATGTATGCGAGTGACGTCAAG 4376 29 100.0 32 ............................. GTCACGTAGTTCTCCTACCGTATACTGTTGCA 4437 29 100.0 32 ............................. ATAAGTTCGACCGTAATCTGTCATCTGGTTTT 4498 29 100.0 32 ............................. GAGATATTAGTATGATATACAATGACGCGACT 4559 29 96.6 32 ............................T TTGAGACTGTCTGCCCAAGAGCGAATCTGACG 4620 29 100.0 32 ............................. TAGATGCAGTTGCGTTCCACCCGTTCGCCCTC 4681 29 96.6 32 ............................T GATTCGCTGCATGTGCAGATAGTTATTAACGC 4742 29 100.0 32 ............................. CGCGGAAGCTGGTCGGTGGAATCCACCATCGG 4803 29 100.0 32 ............................. GAGGTGCGAAATGAGTGGGATTTCTCTTAGGG 4864 29 100.0 32 ............................. TAGGCTTCGGCGATGTCCTGACGGCATTCGAT 4925 29 100.0 33 ............................. GATAGCAATACAGATTACGATAATATACGCGAA 4987 29 100.0 33 ............................. GAATGAAAATGGCTCGTTATTATTATATTGATT 5049 29 100.0 32 ............................. GCGCGAGACGTATGAGGCACAAGTATCAACTC 5110 29 100.0 32 ............................. GAACAAAAAAATGAAACAAGATAAATGGTTGG 5171 29 100.0 32 ............................. TCGAGCACCACGGCACCTGGCCCGCGATGCAG 5232 29 100.0 32 ............................. CTCGCCATGTACGGCGAGGGTGCGACCACGCC 5293 29 100.0 32 ............................. TGCGCAAAATCAAGACGGTGATACAGCGAGTC 5354 29 96.6 30 ............................A GCAATACAAGTCTCTTATTGACATGGATGG 5413 29 100.0 32 ............................. ATTGTCACCCTGTTGCTGTATCCAGTCATTGC 5474 29 100.0 32 ............................. TCATAAACCCCATTCCTATACAACCAATCAAC 5535 29 100.0 32 ............................. TTCGACACCGACTACGCCGATTACTCCATTAA 5596 29 96.6 32 ............................T TATGAGTCTCTCTAATGACGATATCGCTACTT 5657 29 100.0 32 ............................. CAATCCTTCAACCCCTCCAGATCAGTCACATA 5718 29 96.6 32 ............................T GCCTCACGTTCGACCGAGTACAGGACGCACGC 5779 29 100.0 32 ............................. TGGCCTAAGCAGGAAATTAAATCGACGTACTG 5840 29 100.0 32 ............................. ATCTGCGGCTACGTGCCTCCGGTGAGGAAGGA 5901 29 100.0 32 ............................. CGTGAGGAAGCCGGCGTCGAACCCGTACCGCC 5962 29 100.0 32 ............................. TAACCGTGATACACAGGCTTGTTCACAGGCAA 6023 29 100.0 32 ............................. CAGTGCGATGGTCTTTTTCATGGGTTCCTTCT 6084 29 100.0 32 ............................. CGTGGTTTTGTGCGCAAGAAGGATGCGGTTGA 6145 29 100.0 32 ............................. TCATGTCATCCATTGAACTCAGTCTAATCGGG 6206 29 100.0 32 ............................. CCGCCAGTTCGAAACTCAGATCCTCGTCCGAC 6267 29 100.0 32 ............................. GAGCAAAAAATGCGTTACATAAACCAAATCAA 6328 29 100.0 32 ............................. GGGATGTTTAATGGTATCTATGGTACTCAGGC 6389 29 100.0 32 ............................. TAGCGGTGGTTTTTGTCATCCTTTTCGAGTAC 6450 29 100.0 32 ............................. GCGGGTAAGGCGGTTCAGGCGCATGCCACTGC 6511 29 100.0 32 ............................. GAACGCGAAACGAAAGGAGCGAGACCATGAGC 6572 29 100.0 32 ............................. GCTTCACCCGCCTACTCCACCTCAACCACGAC 6633 29 100.0 32 ............................. TTCGTGAACGCTTCGATACTGGTGTCGCCAAC 6694 29 100.0 31 ............................. CGGGGGGAGATTGCTGACAATCCAGCTGGCG 6754 29 100.0 32 ............................. CCCCGGAATGGGGCCGATATGAGGCCGACGGC 6815 29 100.0 32 ............................. TCATTGTTGACGGCGCATGTCGTTCTGAGGAA 6876 29 100.0 32 ............................. CCGGACGCAGGCCGGGGAGATCCGCGAACTCC 6937 29 100.0 32 ............................. GCTGAAACCACCCACGGACCCGGACGACCGGA 6998 29 100.0 32 ............................. CCTACGCAGCCGATGACAGCGAGTGCGGCGTC 7059 29 100.0 32 ............................. AACTGGGCCTCGGCCTCCGGGTTGCCGCCCAT 7120 29 100.0 32 ............................. ATAATGCCATCTGGTGTTTTGACGGTGATTCG 7181 29 100.0 32 ............................. TTCATGTCGTCGACGGCCATCCGCTGGTCGGC 7242 29 100.0 32 ............................. CTCGCCAGGACCACCGGCAAGACCGCCGGCCC 7303 29 100.0 32 ............................. GACGCGCTCAACTGGGTCAAGGACAAGCTCGG 7364 29 100.0 32 ............................. GCCGGCGTGGAACCGGTCTCAACGGGGGTGAA 7425 29 100.0 32 ............................. GCTTCAAGCTCCTTGATGTGCTTGGCGGTCTT 7486 29 100.0 32 ............................. TAACCTCAGTGGCGCGGGATATGTTTTGTCGA 7547 29 96.6 32 ............................T GGGGTTTATGATTTGGGTTCTGGGATTGGGTA 7608 29 100.0 32 ............................. GCCACCGCCTCCTATGTCAATCCGGGCGGTGC 7669 29 100.0 32 ............................. CTTGTTCCTTTGACTCGCCGGCGCGCCTTGCC 7730 29 100.0 32 ............................. TTTTTTGTTGACACCTATAATATAAGGCGTGT 7791 29 100.0 32 ............................. CCGTGCAGTATGCCAACTATCTGGTCGTGTCG 7852 29 100.0 32 ............................. CTTTGCCTCTGGCGTCCAATAAATCCACGGTA 7913 29 100.0 32 ............................. CCCAAACGCAGGCAACCCGCGTTCAAACCCTA 7974 29 100.0 32 ............................. GAGGCGCTCGACATGGTACGGGGTTTGTATGA 8035 29 100.0 32 ............................. GTTGACGGGCCATGAGCACGTCAACACTGACG 8096 29 96.6 32 ............................C AGGCCAGTGTGCCGTATTTCAGCGATGTCGAC 8157 29 100.0 32 ............................. CCTCGGATACTCTCCAGTTCGCTGTCACTCAG 8218 29 100.0 32 ............................. GGCTGCTGCGTAGTCCTTCCAAGAGTCTCGTA 8279 29 100.0 32 ............................. GAGGAGATGTGAGCGGACTGATACTTCCGTTC 8340 29 100.0 32 ............................. CTAGGTGATATGACGAAGGGTTCCTCCGTCAG 8401 29 100.0 32 ............................. AGGACACCCACGGAGTTTTCCCAGTAGATCGT 8462 29 100.0 32 ............................. AGGACACCCACGGAGTTTTCCCAGTAGATCGT 8523 29 100.0 32 ............................. TAAACCACCACATGACATCCCCTACGCCATTC 8584 29 100.0 32 ............................. CCAACAAGCTAGCCATCGGCAACCGCAACGCT 8645 29 100.0 32 ............................. TCGAAACCATGGCCCGCGCACTCTACCTCGGC 8706 29 100.0 106 ............................. TCACCGGCTACGAGCGGGGATGATCCGACGGGGATAACCCCCCGACTGATGTTCCGGTCTAAAGAGCCGGTTGCATGGGATCCCCGTTACTTTAATTCTACCATAC 8841 29 96.6 0 ...............A............. | ========== ====== ====== ====== ============================= ========================================================================================================== ================== 141 29 99.7 33 GTTGGCCCCGCACGAGCGGGGATGATCCG # Left flank : ACAGCAATAGCGCCGTAAATGATGACCCCCACAAAATCCTGTATATTGCCAATATATGTGATTTCGGCACACGATTGGCAATAGAGCTTGCGAAGGGGTGAGTATGCGTATTACCTTTCAACACATCACCCAGTTTCTGCTTGCGATTCCCCTATTGCCATATACCACTGCTGTAATCAAATATTTTTATTTGACTCAACCCGCTTTTTCCTCGTAAAATCAGACTG # Right flank : GCCAAAACGCTCGAAATTATCCGTAGGTGTTCCGGGCCTCGCATAGCCGCATCCCCGAGATCGTCGAGCTTTCCAAAAAAATCAGGAGACGCCGCCCCGACATCCCACGCACCATCGAACCGGGCTGCTCCAGCGCCAGGCTCGAGGCGTTCGACAACAGGATCAAGGTCACCATCCGCATGGCCTACGGCTTCCACCGCGTCACCAACCTCATCGCCCTGATCATGCTCCGATGCAGCGGACTCGACATCCGACTACCACAACCCACAATCTAACCCACAAAAACAGCAGAAGCCTCTCAGATAATCGCGGATGTTGATTCCTCAGCTCAATAGGCATCCGGAATGAGGCATCGGTATAGCGGCAGGGAGGCCATTGGGACTAGATATCCTCATCTCGCATGAAACCAACCTCCGTCACCGTACACGGCATCACTATCTTCTTCCATATCTCCGATAACGTGAGGCCTTACTCCAACCAGTTTTCTTTGCCTCGTTCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCCCCGCACGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //