Array 1 390483-387736 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH976535.1 Thermaerobacter subterraneus DSM 13965 ThesuDRAFT_TSB.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 390482 30 96.7 36 A............................. TGCCACGTATGTTCGAACCCGACGAAAGTAAAAATT 390416 30 100.0 35 .............................. AACCGTGGCCTGTCCATTCGCCATCCGGAGTCCCC 390351 30 100.0 37 .............................. GGTCTCCCCGGTCGCTTCCGGGGAGCTTCGACCGTTT 390284 30 100.0 36 .............................. CACTCCCCTCGGGGCTCGTTGGATCAGCCACCACCC 390218 30 100.0 36 .............................. AGGGGCGGGGAAAAGTCACCGCCGCCGATGTCCGGC 390152 30 100.0 37 .............................. GAACTATCCACGAAAAGGCAACTGACTCGAAAGGAAC 390085 30 100.0 37 .............................. CTTCGTCTTTGACCTCCGGCTGGAACAAGACCGGGAG 390018 30 100.0 37 .............................. ACGAGCGTTGGGGAGCCGTCGCCTCGACCGTAGCAAA 389951 30 100.0 38 .............................. CGATCAGTTCCATGACCATCCGGCCGGAGGCGGTTCGA 389883 30 100.0 36 .............................. TCCAACCCCATCATCGCCGCCCGGCCCGTCGACTGC 389817 30 100.0 36 .............................. CGTGGATGGTCCCCAGGATCGGCACCGGGACGACTT 389751 30 100.0 35 .............................. GATCTCAAGGCGCAGCGGTACCGGCCGACGGGCGA 389686 30 100.0 36 .............................. GCGACTGCAGCTTCCTCATCAGACGACCACTGGATC 389620 30 100.0 36 .............................. GGCACTCGGCGCAAACGGGTTTTCACTCACACACAC 389554 30 100.0 38 .............................. TATGTCGTCTCGATTCGCGGCGCAATATGCCGGACGAC 389486 30 96.7 35 ..........C................... CCACGCACCCGTCTCCGTTGCACACCTGCAGCCGG 389421 30 100.0 38 .............................. GTGTCTCAGACAGCTTCACGCAATGAGACACCGGCTTC 389353 30 100.0 37 .............................. TCATGAAAAACCGAAGTAAGCAATTCGGCCAAACCGA 389286 30 100.0 35 .............................. CGTGCTCGACCTCTGCATCCGGGCCGGGTGGCGCG 389221 30 100.0 35 .............................. CCCCGCGTCCCCGCGTACTTCGCCTCGATCCGGAC 389156 30 100.0 38 .............................. GGCGACGGTCAAGGGCTTCCGGGCGACGGGAAAGTCGT 389088 30 100.0 37 .............................. GCGAGGCCGCTCCTCGCGAGCCGCTCGGAAGCCGCCA 389021 30 100.0 36 .............................. TCACGATCCCGCCGGACCCTTCCGGGCGCGCCCGTT 388955 30 100.0 36 .............................. AGAACGCGACGCTGGCTCTGGCGTGGGCAAAGCGGC 388889 30 96.7 36 ........C..................... GCCGCCTCTTTGAGACCAACCGTCTCCACCAGCCTT 388823 30 100.0 36 .............................. TGGCACCGATTGCGGTCGCTGTGTTCGCGGTCGTGC 388757 30 100.0 35 .............................. ATACGATCATCAAAGAGCTCGCTCGGCGCGCCAAA 388692 30 100.0 36 .............................. GGCTGGATGCGCGGCGACGGCCGCCCCGACAGCGGC 388626 30 100.0 35 .............................. TTCCAGCAGCTTGGCCCAGCTCTTCCAGCGGCCCT 388561 30 100.0 35 .............................. ACGATCGCGGGGGCGCCGTTTAGGGCCCTCGACGC 388496 30 100.0 36 .............................. CCCAGCTTCACCACCGCCAAGAAAAGCGCCAGGGCT 388430 30 100.0 37 .............................. GCGACACTCGGGGAAGAAAGGGTGCTGGAGCAGATAA 388363 30 100.0 35 .............................. CCGGAAAGCACGGCGGATGCTACCATGCACACAGA 388298 30 100.0 36 .............................. TCGGGCAGTGGGTCGTCTCTCAAGAGACGCCCAGAG 388232 30 100.0 36 .............................. CCCCCATCCACCGCCGAAGCACGACTGCGGAACCCG 388166 30 100.0 36 .............................. CGGAAATACGTGGCGGTCATGGAGCGCCAGGCGCGA 388100 30 100.0 35 .............................. TTACCACGTCATCAGGGAAACGGCTATGCCGGGCG 388035 30 100.0 36 .............................. CCCCGAAGCGGAGGCCCGGAAGGCCCAAGGGGTCCA 387969 30 96.7 38 ...........T.................. GTCGAAACGACTTTCACGGTGACCCATGCCAGCAATAC 387901 30 100.0 38 .............................. GCTCGGTGCGAACCCGACCGTGGCATGCACGGCATGGC 387833 30 100.0 38 .............................. GATCGGCGGCCGCCCAGATAATGTCTTCCAGCTGTCGC 387765 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 42 30 99.7 36 GTTTGTAGGGTGCCTATGAGGAATCGAAAC # Left flank : CCCAGGCGGCCGTCAGAGGGAGGAACGGTTCGGGCTGCCGACCGCGGACCTGGCTGACAAACCGCCGGACCGTGGACTCACCGCCTTGAAAGCCGTACTCCTCGACCAGCCGTTGGTAGATCCGGCGGGCGGTGTGACGCTGCTTTCGCGGGGCTGTGGCGTCTTGTTCCAGCCACGTCAGGATGACGTCCCGGTAGGGGTCGAGCACGGGGCTGGGACGTGGCGCCTTGAGCCGGTAACGAGGCGGTTCCGCACTCGCCAGGGCTTTGCGAACCGTCTGGGGCCAGCCCGAGCTGCCGGCTGATCTTCCGGATGGACCAGCCATCGACGAAGTGGCGCTTTCGGATAAACTCAATATCGACCATCCCGAGCACTCCTTCGGCCTCCTGTCCCTGGAAGGTCTGGACACCCTCCCAGCATACAGGGGCCAGGTCTCGGGGTGGTCAATTTTTCGGTTAGCACAAGGGCCCTACGTGGGTCACTTTTCGATTAGCGTTCAC # Right flank : CTGGATCGGCCGAAGGGGGCGCCAGCGAGGTACCCTCAAAAGGTGTGTGCATGATTGAGGTCAAGCCCCCGGCGCAGGAATCGGTACCTTCAAGGGATAACCTTGTGCCGATTCCGTGGGCGGAGGCGGCAGCGGAGCGCAGGCAGGAGGGTGCGCCGCCATTTTACATGGGCAACCAAGCCCGCAGTGGTGTGTGGAGTGGCCCCCTCCTGCGCACCGCCCACATGGGCCTGGGCATGTGTGCCCGTGAGCCCGGACAAGTGTATGCGTGCACGCTGTCCCATTTCGCCGCCCCTGCGCTCGATGGCCTGAGGAGGGAAGGTCGATGCCACGGTATTGGGGGCTTGACTTGCACGCCCAGTACGTGCACGTCTGCGAGTGGCGACCTGAAACCCAAAAAGAGAAGCATTCCCGGTTCCCCAACACCCCGGACGGATGGGCGCGTTTCCTCCAAAGGCTCAGCCCCGACGACCGGGTGGCCCTTGAGGTCACCGGGAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGGTGCCTATGAGGAATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: R [matched GTTTGTAGGGTGCCTATGAGGAATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 398021-392939 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH976535.1 Thermaerobacter subterraneus DSM 13965 ThesuDRAFT_TSB.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 398020 30 100.0 36 .............................. GGATTTGGCGCGGCGGCTGGCACGTGCGGCGGAAGA 397954 30 100.0 36 .............................. CCAACTACACGCCCACCCTACAGCACCGTCATCACT 397888 30 100.0 37 .............................. GTGTGTCGTGGCCGCGGGAAGGGCGCGGCAAGGGGGG 397821 30 100.0 36 .............................. TCGCCGGACATGGCGAGGCGTCTGGAACAGCAGTGC 397755 30 100.0 36 .............................. TGAGTGCCAAGGCACCGGCGTCGTGCCAGAGTGCAA 397689 30 100.0 37 .............................. ACGCGTTCTGACTTCACGTCTGCGGCCGCCCAGATGA 397622 30 100.0 37 .............................. CGGCCGCCCAGATGATATCTTCCAGGACCCGCCAAAT 397555 30 100.0 36 .............................. CTGCGAGCCGAATGAGGACCACTATCCACCCGAACC 397489 30 100.0 36 .............................. CGCGAGCTGGACGCCCTGGTGGTGCCCGACACGGCC 397423 30 100.0 36 .............................. ACCGTCTCAAAACGTGGCTGACCCGAGGCCACCTGC 397357 30 100.0 35 .............................. AAAATCGCTCCCTTCTGTTATTTTTAGTGTGTGCG 397292 30 100.0 38 .............................. TGGCCGTCGAGGCCTGGCCGCATTCGTAGAGGCCGTGT 397224 30 100.0 37 .............................. CTGGCCAATGTGAATGTGTAACCCACAAGCACCGTCG 397157 30 100.0 38 .............................. ATGGGGAGTTTCAGACTGGCCGCCTTGAGGGCTTCCAT 397089 30 100.0 38 .............................. TGTTGCGCCGGTGTCTCACTCAGCTAGCTTCACTCAGA 397021 30 100.0 36 .............................. ACCCTTTACGCCCGCAAGGACGCGACGGAGCAGCTC 396955 30 100.0 35 .............................. TGGAATTCGACCGAAGACGCCGACTATGTAGCCAT 396890 30 100.0 36 .............................. TTCATTTGGTTGTGTGGCAGGCCTGCAACGTTGCGC 396824 30 100.0 39 .............................. CCGGCTATCCTGTCTACGACCAGACGGATGCTCCTGGTA 396755 30 100.0 37 .............................. ATGATATCACGACTAAGGCCGCTAGCGCAGGCCGTGA 396688 30 100.0 36 .............................. CGGTAGCAATAAACGCGGCGGAAGGGTTCCGTTGTC 396622 30 100.0 36 .............................. GGCACTCCAGGTAAGTTTGGAGACCCGTCGGACTGA 396556 30 100.0 35 .............................. GCGCTACACCAGGGCGCTTGCGTGGGTGAGTCACA 396491 30 100.0 37 .............................. TGTTGCGCCGGTGACTCAGACAGCTTCACGCAATGAG 396424 30 100.0 37 .............................. GACGCACCGCCCGCCGGGGTCAGCATCACGGCGGCCA 396357 30 100.0 36 .............................. CTCCAACACCCTCATCGGCCCCGTCCGCATCTCCCG 396291 30 100.0 36 .............................. CACCAGGAGCAGGATGCCCATTCGGATTCCGTTTGA 396225 30 100.0 36 .............................. CGACCTCTTCGCGGGCCGCGCCGACATCCGCCACCT 396159 30 100.0 37 .............................. ACAAGGGTCAAAAGGACATGCTCAAAAACTACTGCAA 396092 30 100.0 36 .............................. CCAGCATGTCATCGCGGAAGGCTTCTTCCGTTGCGT 396026 30 100.0 35 .............................. CGCTTGCGCTTGCCATTCTCCTGCTCCTGTCGCTC 395961 30 100.0 37 .............................. CGGCCTTTCGTGCTAGGCTTGCGTTACACTTCGATGA 395894 30 100.0 36 .............................. GCGGCACAAGGCCTGGAATGTTGGGCGGCGCGGCCT 395828 30 100.0 36 .............................. AATGCTCTGCACCAGCGCCGCCATGGCGCTTTCCGG 395762 30 100.0 37 .............................. GTTCGCCTCCCGTGACTTCTGGTCCCGTGACTTCTGG 395695 30 100.0 37 .............................. CAGCATAATTTCTGTTTAGCCATTTCGCGGGTGGCTA 395628 30 100.0 37 .............................. AGGCCGCACACTCCAGGCCTGGGCGAAGGCCTTGCGC 395561 30 100.0 36 .............................. AGTGCGAAGTGTCGGATTACGAATTCGGCGATGACG 395495 30 100.0 36 .............................. TCATTCGGTTCGCAGTAGTTCATCCGTTCTGACTTC 395429 30 100.0 37 .............................. AGGTTACGGGACCAGAGGATTAATTCCTCTGGTCCCA 395362 30 100.0 39 .............................. ATGATGAATTTGACTATCAGTCGTGCTGTTCGGTATGCG 395293 30 100.0 38 .............................. AGGCCGTCAACGAAGGCCGCAAGGCCGCGACGGCCCAC 395225 30 100.0 36 .............................. CTGTCAACGTGTACACCTACGGGATTGAGTTCTACT 395159 30 100.0 35 .............................. CCGGATCCCGAGACCCCGAAAATGCCGATGTGCGG 395094 30 96.7 36 ..........................G... GGACTTCGGATCAGCGGCCGCCCAGATGACATCTTC 395028 30 96.7 38 ..........................G... ATGCCCGGCCAGATGGTGACGCTCGGTGTGACGCCTGA 394960 30 100.0 39 .............................. CTTCCAAGGTAACCGACACGGATTATGATGATGACCAGG 394891 30 100.0 38 .............................. CTCCTGCTCCTGCTCCTGCTTGCGCTGGCGCTTGCGCT 394823 30 96.7 36 ....C......................... CCCGTCGTCGTGTCCGATCTCCAGCGCCGGCTGAAC 394757 30 100.0 36 .............................. AGCAACTGGCGCTTATCCTTAGCGATAAATACCAGG 394691 30 96.7 38 ............................T. CACTCCTGGCGCGGAAGGGTGGTGATGGCGAGCAGGGC 394623 30 100.0 40 .............................. ATCGGCTCCAGAACGGGCGGAACGGATAGGGTGCGTAGGG 394553 30 100.0 36 .............................. AGCATGCCCCGGGCCGTCGGCGCCTCACGCCGGACC 394487 30 100.0 35 .............................. TAGAGCCGTTCGCCCCACGGCGCGGGGGGATAGCG 394422 30 100.0 38 .............................. CCGCTTCTCGTGCCTCCTGTGCCTCCTCCCACGCTTGT 394354 30 100.0 37 .............................. CGCCTTGTTGGGCGCCACCGTCCCGTTGGGCCGGTGC 394287 30 100.0 35 .............................. TGCCGTCGGTACAGCACCGCGTAACCTCCAGCGTC 394222 30 100.0 36 .............................. CACAAAGTGCGGTAGGCCCTTCGCCGTTTTCCCGGG 394156 30 100.0 36 .............................. GCGGTTGAAAAGTTGCGCGAGTACGCCGACATGGAC 394090 30 100.0 36 .............................. CCCTTCCTCGGCATCGTCCGCGTATACAACCGCCAC 394024 30 100.0 37 .............................. GGAATCGAGGCATGGCAGGGGTCGGTATACGAGTGGG 393957 30 100.0 36 .............................. GGATTATAAGCCTCCAGCGTGCTTAGTGTGGTGAGA 393891 30 100.0 36 .............................. TTGGGACCAGAAATTCGCCCGTGATAACGCCACTGC 393825 30 100.0 36 .............................. ATGAGCTGTTCCGCTTCGAGTAGCCCCGCCGCTTTT 393759 30 100.0 36 .............................. GGTGGTATCCGGCGCGGTGATTCCTCCCGCGCCAGG 393693 30 100.0 36 .............................. AAGGCGATCATCGAGAGCTACGACGTCGCCCGTCTC 393627 30 100.0 36 .............................. AAATTCCAATTCCAACGGAGCCAAAGGCCTACGGCC 393561 30 100.0 35 .............................. AACCATGCCTGGATGACTGCGCTTTCCTTCGGTGA 393496 30 100.0 35 .............................. GCCGAGTACGTCTGGCCCCCCATGGTGTAGTCCGC 393431 30 100.0 36 .............................. ATGAGCCGCGCCGAGCTCGCCGACCGGCTCCTCTCG 393365 30 100.0 36 .............................. CAAGGACGCGCCGCAATAACCCACCGCAACACGGGA 393299 30 100.0 37 .............................. CGGCCAACTGGTCTGCATACTGGCGCAACTGTTCATC 393232 30 100.0 36 .............................. CCAGATTCATAACCTGCGTCCGCATTTTTATGATCC 393166 30 100.0 36 .............................. GGCGTGTACGCCGTGACGGCCCGGGCGACCACGCCG 393100 30 100.0 36 .............................. ATCCGCTGCAGCTGTTCGCGGCTGGCCTTGGCCTTG 393034 30 100.0 36 .............................. ACCAGACTGGCAATCTCCAGCCCGACGCGGATCTTC 392968 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 77 30 99.8 36 GTTTGTAGGGTGCCTATGAGGAATCGAAAC # Left flank : ACGAAGCGCATTGAGCATCCCCCCGCCGATGTGGTCGGTACTGGCAGGCTCGCCTTCGGCGCCCCCATGGTGGATGGGGCGCCTTCCGCCGGCGGCCGACCCAGCGGTACCGCCGGCCGGCTTCGGCGCCCCATGGTGCATGAGGCGCCCGGCCATCCAGGCCGGTTCTGGCAAGCGCGCAATGGCAGGTTCGCAATGAAGGGCCCGTCCTCCTGGAGGGGGGGCTGGGACTTGGGGATGGGATGACGGCGGATCGGACGATCGAGCATAGCCCGATGGATAGGTGGCCGGGGGAGGAGGCAAGGTGGCCCTGCTGTCGACCTCCGATCACGGCAAAACCCCGGGAGGTCGACAGCAGGAGGTAATTCCACCCAGTTGGCGCCACGCCTGCGTTTTTGGCTTGCCCGCATCCTGTTTTGCCCAGTATCCCTGTATCTGGATCGACAGAAAGCGGGCGCAGGAACCGTTGAAGGAGAACGGTTTCTTCGGTCGAAGATGGG # Right flank : GCGGCGCAGATTGATGTGTGCGTGCTAATCGAAAACTTGACCACCGTGACAACCTAATTGTTGACCACCCCGGTGTCGGATTTAGAGGTTCGTCAGTGTGAGACCCCCTCCTTCCGCAACCGCTGCTGGCTTTCGCGGAACCGGTAGGACTCGCCCTTGAAGAGCAGCACGTGGGACCGGTGGGTGAGCCGGTCGAGCAAGGCCGAGGTCAGGGTGGCGTCGCCAAAGACCTCGACCCAGCGCGAGAACTCCAGATTGGTCGTGATGAGCAGGCTGCCACGCTCGTAGCGGTGGGCGCAGAACTGAAACAGCAGCGGACCCGCGGGGCCCAGGCCGAGGTACCCCAGTTCATCGAGAATCACGAGGTCGAAGCGATCCCACCCCTTGAGGGCCTTGGGCAGCCTGGCCTCGTTGTGGGCCTGCAGCAGCTCCTGCCCCAGGGCGACGGCCGTGGTGAATCGCACCCGCCAGCCGGCATGGATGGCGGCCACCCCGAGAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGGTGCCTATGAGGAATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: R [matched GTTTGTAGGGTGCCTATGAGGAATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1089517-1091868 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH976535.1 Thermaerobacter subterraneus DSM 13965 ThesuDRAFT_TSB.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1089517 37 97.3 34 A.................................... TCACCTGGCTCCGCCAGTTCTACGCTGAGCATCG 1089588 37 100.0 35 ..................................... CCCGGGGCCAGGACGAGCTCGGCAAGGCCACAAAG 1089660 37 100.0 35 ..................................... ATTTGAGGCCCAACCTCCGGCGCAGCTCATCGGCC 1089732 37 100.0 36 ..................................... GTGGACCCCGTGGCCCGCGAGCGGAGCGCGAGCGGC 1089805 37 100.0 36 ..................................... GAGGCGAACAGGCTGCAGCACGCCTCGATGCGCTCG 1089878 37 100.0 36 ..................................... GCCGGCGGCCGTGGCGAACGCCTGCAGCGCTCGCAG 1089951 37 100.0 34 ..................................... CAGATCGAGGACCAGCAATGGACGGCGCCGGAGC 1090022 37 100.0 35 ..................................... CCCTGCGCACAAGCGACTTCGCGCGTAAGGCTGCC 1090094 37 100.0 36 ..................................... CCTCGGTGGAGTTGGTTCCTGGACCGAGCTTGGCGT 1090167 37 100.0 37 ..................................... ACGGCGACACCCCCTACAGTTCCACGCCGTTGGCTAG 1090241 37 100.0 37 ..................................... CCCCCGCGCCGTGGGGCGAACGGCTCTACGCGGGCAG 1090315 37 100.0 34 ..................................... CGCTACGAGCTGCTGGATTCGGCGAACCGCCACA 1090386 37 100.0 36 ..................................... AACGCCTGGCTGCATGACGTGATTGCGAGGGTGCTG 1090459 37 100.0 36 ..................................... GCACGGTACCTGGCAAGGGCCGTGCTTGAGGCGAGG 1090532 37 100.0 36 ..................................... TTCACGCGGCCCTTCAGGCGGCGGTCGACCAGGGGC 1090605 37 100.0 35 ..................................... CAGACCCGCTCGACGGCCGCCGGGGTCTCTTCGTC 1090677 37 100.0 35 ..................................... CGCCTGGCGCCGGAGGCTGGCCGCAAGAGCGGCGG 1090749 37 100.0 37 ..................................... GACACGCTCGCCAGCTTGCCGTCGGGGGCGTAGTTGA 1090823 37 100.0 34 ..................................... GGGGCCAGCATCTTCTCCTCGGCATAGTCGCCGT 1090894 37 100.0 34 ..................................... GGGGCCAGCATCTTCTCCTCGGCATAGTCGCCGT 1090965 37 100.0 36 ..................................... AACATCGCACTGCTGGCGTCGACGACGCGGTTTGTG 1091038 37 100.0 34 ..................................... TGATCCCGCTCAACCCACACGGGCCCGCTCTGCA 1091109 37 100.0 34 ..................................... AAGCCCCTCAGCATCGATTGGACGCCCCTGAACC 1091180 37 100.0 34 ..................................... AAGCCCCTCAGCATCGATTGGACGCCCCTGAACC 1091251 37 100.0 37 ..................................... GGCGAGGCGTACAACGCCCTGCTGAATCACCTGCACC 1091325 37 100.0 38 ..................................... GCAAGCCACCGTTTCCGTCGTAAACAAAGGCGACATAC 1091400 37 100.0 34 ..................................... ACGGTACGAGCGCGGGGAGATCCCCGTGCCGGAT 1091471 37 100.0 34 ..................................... GCGTTGGCACCGGCGTACCTCCGGCCACCTTGCG 1091542 37 100.0 36 ..................................... CCCGTAGCCCTCCCGCTCCCCGGACTCGGGGATGGT 1091615 37 100.0 35 ..................................... AGGAGCACGACGCGCCCCATCACACGACCCTCCCG 1091687 37 100.0 35 ..................................... CGGTTGCTCAAGCCGAACCGGCGCATCAAGGCGTG 1091759 37 100.0 36 ..................................... ATCGCCCGCTGGCAGCGCCAAGCTCGCCTGCTCGCC 1091832 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 33 37 99.9 35 GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC # Left flank : CGTGAACACGGAAACGAAAGAGGGACAACGGCGGTTGCGACGTGTGGCCCGCGTTTGTACCGGCTTTGGGCAAAGGGTGCAGAAATCCCTCTTTGAATGTCGCGTAACACAGGCCCAGTTGGAAGAACTCGAGGCAAGGCTGGTGAAGATCATCGACGGGAAGAAGGACAGCCTGCGCATTTACATTCTACCGGGGGGTCGGAACCGCCTTGTAAGGGTTCATGGAATCGACCGCTACATCGATTTCGAGGATCCGCTCATTGTATAACCATGTGGGGATCTCCGGGGCATCAGAATCGGTCAGCGTGGCCATGATGGGGTGCGCGAACCCCTAGTGATCACGGAAAACCTGGGAGGTTCGCGGGGCGCGAAAAGCCTTGTGAAACAAGGGTTTGGGACGTGATGGGTGAGGACGGGCGCTTCCGATATAGAGATTCCAGACGGGGTTCGCGCAATTGGGTCGAGAAGTTCAAGCACGATGGGCGTTTTTACCCCGCGCC # Right flank : CCCTATGCCGGCGCCCGCTCTCGCATGGCGCCGATCGTCACACACCTGGACTTGCCCCGGTTTAGTGGACACCCCGATACTTGGGGCGTAAGCCCCGGAAAGGGTGATCCCCATGCCGGCTACCAAGCCGCCGTATCCTCCCCAGTTCCGGGCCGAAGCCGTCCGCCTCGTCCGGGAAAGCGGGAAGAAGCTCCAGCAGGTTGCTGCCGATCTCGGCGTTTCGGAAGCCAGCTTGCGGAAGTGGGTCCGCCAAGCCGAGATCGATGCGGGGCAGCGCCCCGGGTTGACCACAGCCGAGCGGGAGGAGCTGAACCGGCTGCGGCGGGAGAACCGGATCCTGCGGGAGGAGCGTGAAATCCTAAAAAAAGTCCTCCATGCCGCCTACGGCGGCACCACGAAGGACGAAAATGGCGTCCAGCCAAAGTTGTATGTGCCACCGGTTGCATGAGATCGAGCTTGCTTGGTGCCGGCAAGCCCGCAAAAAAGTCTGATCCTGGCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-18.20,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.01,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1096462-1095305 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH976535.1 Thermaerobacter subterraneus DSM 13965 ThesuDRAFT_TSB.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1096461 30 100.0 36 .............................. TCACTTCCTTCGTAGCAACCGCCGCAGCTACTTCCG 1096395 30 100.0 35 .............................. GCAAGAGAGGAGGATAGAGCTAACTGCCATGTCGC 1096330 30 100.0 36 .............................. GACACTTCGCACTCAATGCCGAGGGAGACCGTCGAC 1096264 30 100.0 37 .............................. GGCGAGATGGCGAGCCGCGACGAGTTTGCGCGGGCTC 1096197 30 100.0 38 .............................. GTGCGTCCACCTCGTACCGCACCCCCAGGCGCGCGCAG 1096129 30 96.7 36 ............T................. AATTCCCTATCGCACTCAATCGCAATCGCATTCTTG 1096063 30 100.0 37 .............................. TCCGGCACCCGCTGGCAGCCGGGCGTGGTGGAGTGGG 1095996 30 100.0 36 .............................. AAGTCGGGGCGGAAAAGACGATCACGAAGAGCAACA 1095930 30 100.0 38 .............................. GGCATTCCGCCACGAATCCGGTGCCATGGCACTCAGGA 1095862 30 100.0 36 .............................. TCAGAAGATTCAGCGCATTGACCAGCTTATGCAAGT 1095796 30 100.0 36 .............................. ATGTCCACGAGCCGAAATCCGTTGGTGTTCGAGGCC 1095730 30 100.0 35 .............................. TGGGACCGAATTCACCGGCCGCTTTTTGCCCACGT 1095665 30 96.7 36 ....A......................... TACACCACGAGCCCGTTACCGTCGATGTAGACCCAG 1095599 30 100.0 35 .............................. CACGGGTGACTCAGATGGCTTCACTGAGTGAGCAG 1095534 30 100.0 37 .............................. GCAGGACCGGAATCGGCACCAACACCAGGACGCAGGA 1095467 30 100.0 36 .............................. TTCCGGCGGCTCCGGATCCGGGCCGCCGAGCGCGGC 1095401 30 100.0 37 .............................. AAGAACCTCCGAACGCGGCTCGTGTCCCGCACCTGCG 1095334 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 99.6 36 GTTTGTAGGGTACCTATGAGGGATCGAAAC # Left flank : ACTTCCGCCGGATCCTCAAGGTCCACGTGCTCGAGCGCAGCGAGGACGTTGACCGCGTCGGCCGGACTTGTGGGAACTCCCGCGGCCCGCAAGCGACGCACCAGGTGGATCACGTGGTCCCGCAAGGTCTTGGCCGGCGCCTCCAAGGGATCATCCCCCCCGCGATGTTTTCGGCGATGTTTTCGGCGCTCTTTTCGGTGCTGGTCCGTAGGATCGGCTTTTCATGCAGCTGTTTCCGGTTGTTCGCGCAGCCGCGCCCGTAGGCGTCTCTGTAACCGTTGCCGCAGTCAGTGTCCACCTACCCTAATGTTTTCTGTCGACCTCCGAATTCCCCCAAACCCCCGGAGGTCGACAGCAGGACCCACGTTTTTCCACCCCTTGGCCAGCAAGGCTTTGTCGCCTATTTGCATACATGAGGACCCAGTTGACCATTTTCTGGATCGACAGCACTGCCGTCGGTGAAGCCAAGAAGGACAAGGCTTCGGCGGGGCGAATGACGG # Right flank : CGGTGTGTCCCCCATGTCGCGTGGTAGGCTGTCACAGTTTGTAGGGTACCTATGAGCCTGTTTCACTGACCCTGACGAGATCAGAACTGGGGGAACGTACCGGGTCGATTCGGCCATGTCCCGTGGGCTGACGGTCAGGACGGGGTAGGCCGGCGGCCCGGTCGTTACCCTTCTACGCCAACCCCCCCGCCATCCAACCCAAGGGCGAGGATGAGGACGCCTCCGTGACCCTTCGCCAGAGCTTCAGCAAGTTATGGGTCAGGCAGAGCAGCTTCCACTCGCTGTCACACGCCGCCAGACCCCGACGGAGGAACCGGTCGGCGCCTCGCACGGTCTTGATCTGCCCGAACACCGGCTCCACGGTCTGGCTGCGCTTGGCGTAGATCGCCTGCCCTCGCCGGGTCCGCAGCTTGCGTTCCATCCGCTCCCGCAGGCTCAGCCCCTTGGGGATCCGGCCCCGCGGAGGGGGTGCATCCTTCCAGGCTTGGCGCTGCTTCCAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGGTACCTATGAGGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: R [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //