Array 1 164129-162231 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTY01000005.1 Salmonella enterica subsp. enterica serovar Infantis strain inss42 scaffold_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 164128 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 164067 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 164006 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 163945 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 163883 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 163822 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 163761 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 163700 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 163639 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 163578 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 163517 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 163456 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 163395 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 163334 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 163273 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 163212 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 163151 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 163090 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 163029 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 162968 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 162910 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 162849 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 162788 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 162727 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 162666 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 162605 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 162544 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 162483 29 100.0 11 ............................. CGGCCAGCCAT Deletion [162444] 162443 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 162382 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 162321 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162260 29 93.1 0 A...........T................ | A [162233] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182027-180411 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTY01000005.1 Salmonella enterica subsp. enterica serovar Infantis strain inss42 scaffold_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182026 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 181964 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 181903 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 181842 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 181781 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 181720 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 181659 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 181598 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 181537 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 181476 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 181415 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 181354 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 181293 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 181232 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 181171 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 181110 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 181049 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 180988 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 180926 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 180865 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 180804 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 180743 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 180682 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 180621 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 180560 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 180499 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 180438 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //