Array 1 22097-21531 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDSV01000032.1 Pseudomonas psychrotolerans strain SB11 contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 22096 28 100.0 32 ............................ ATTCCGGGTCGCAATCCAGGACGCGCGCGAGT 22036 28 100.0 32 ............................ AGGGTGAAGCAGACGTCCTGGGCGTCGATCTC 21976 28 100.0 32 ............................ ATTCGGCAGGCTCTCCAGCGCAACCTTGAAGT 21916 28 100.0 32 ............................ AGCAGCCACAGGAGCGGAGGCAGGCGGGGCAG 21856 28 100.0 32 ............................ CGAGTCCCACGCGGCCAGCTTCGCCCTGCTGA 21796 28 100.0 32 ............................ AGCTGATCAAGGAGCGCCGCGCACTGCCAGAC 21736 28 100.0 31 ............................ TGGATGCGGGTATAGCGGGGCTCGCCCAATG 21677 28 100.0 32 ............................ TGCTCCCAGCGGCGCGGGTGCTTGATCGGGTC 21617 28 96.4 32 ......................C..... ACATCGTCGGCAGCGTCTGGATAGCCAACCCC 21557 27 89.3 0 ....................-..C...T | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : GGCCACCTCCACGTCCATTTCGTTGGCCGCATACAACGGCGTGCCGCCGCCACCACAGAAGCCCACCAGCACCCCGGCCCGGGCCAGCTCGCGCATCGCCGCCTGGGTGATGGAAGTCCCCGTGCCGAGCAGCAGGGTAGTGGTGTTGGCGATGGGAATGTTCCAGTACAGCGACTGCTGGCCCGCCTCGGTCACGTACTCCACCCGGCCGCCGTTCACCAGCACGCGGCAGTGCTGCAGGTAATAGAGGTTGGCGCGCTTGGAATGCAGGATCGATTTGAGATCGGAAGGGCTGAAATCGTCCATGACAGCGTCCCTGATGTCGGTGGCGGGCTAGCCGTCATCTTGGCGCGGCGGGTGGCTGGGCGGAACCCTTTTTTTGCGGCGCTTGGCGGGGCCTTTGAAATCAAGGGGTTAGGAAAGGGGGCAAAAAGAGGGGCAGGCGGTAGAAAAGTGGGTGGAAAGCTGTTGTATCAAGGATTTGGGCGAGAAATACTCTA # Right flank : AGTCCGCTTGCGAGCCAGTCTTCTCGACCGACATCCCTGTAATCCCTCGGCCCGTGGCCGTTCCACGTGAAACCTACCCCCTCCCCACATAGGGCATCTTGGTCGCCATCACGGTCAGGGTCTGGACGTTGGCATCCAGCGGCAGGCTGGCCATGTAGCGGACGGCGTCGGCCACGTGTTTGACATCCATGCGCGGCTCCACCGCGGTGCTGCCATCGGCCTGCAGGACGCCGTTGGCCATGCGCTCGGTCATCTCGGTGGCGGCGTTGCCGATATCGATCTGGCCGCAGGCGATGTCGAAGGCGCGGCCGTCCAGGGCCAGGGCCTTGGTCAGGCCGGCGACGGCGTGCTTGGTGGCCGTGTAGGGCGCGCTGAAGGGTCTTGGCGTATGGGCCGAGATGGAGCCGTTGTTGATGATGCGACCGCCGCGGGGCGATTGCTCGCGCATCAGGGCGAAGGCCGCGCGGCTGCAGAGGAAGACGCCGGTGAGATTGGTGTTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30669-31115 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDSV01000032.1 Pseudomonas psychrotolerans strain SB11 contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30669 28 100.0 32 ............................ CAGAACAGCAGCAGGAAGCCCTGGCGGAATTC 30729 28 100.0 32 ............................ TCGGTGGCGGCCTGGAGCAGGTTGGCCAGCCG 30789 28 100.0 32 ............................ TTGGGGATGCGCGGCGTGGCCGGCATGTGGGC 30849 28 100.0 32 ............................ ATGAGCACGAAGCCAGGCGAGATCTCCCGCAA 30909 28 100.0 32 ............................ TTGAAGTACGGATCCCCCATCTTGAGGCCCAG 30969 28 96.4 31 ...........................G TTGGCCACGTCTCGGACGGCGCCAGCAGCGT 31028 28 92.9 32 .G......................A... TTACCTTTAAAGGGTTTCAATAGTCCTTTGTA 31088 28 75.0 0 .T..C.......AC.......CC...G. | ========== ====== ====== ====== ============================ ================================ ================== 8 28 95.5 32 GCTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : GGCCCTGGACCGGCTGCTGGCGCTGGACTGGCTGGTCGGCATGCGCGATCACCTGCACCTGGGGGCGCCGGCGCCAGTACCGGCCCAGGTCCGCTGGCGCCAGGTCAGCCGCGTCCAGGTGGACAGCAACCCGGATCGCCTCCGCCGCCGCCTGATGAAACGCCACGGCCTCAGCGAAGCAGAGGCGCGCCAACGCATCCCCGACAGTGCCGGCAAACGCAGCACCCTGCCCTTCGTTACCCTACGCAGCAACGGCAACGGCCAACGCTTCCGCCTCTTCATCCGCCACGGTCAGCTGCTGGATGCGCCCCTCCCAGGGACCTTCAACCGATACGGCCTGAGCACCACGGCTACAGTGCCCTGGTTTTGACCCTCTTTTCAGAGCACCTAAAGGCACCTTTTAAAATCAAGGGGTTACGAATAGGGCAAAAAAGAGGGTTGGTGAAGGTAGTAGACCACCTAAGTCTTTTGGATAAAGGACTTGGGTGGTTTTTGGTCTA # Right flank : ATCACCACAAAACAAGCTAAGCCTCCAACGCCGCCAGCACATGCACGGGATCGTTCCTGAGCGCCATCAACAGGGCCCTCGCCGGACCAGTGGGTTCGCGCCGACTTTGCTCCCAATTGCGCAACGTACCGACGTCGATATTGAGCTTCCTGGCGAACTGCGCCTGGCTAAGTCCGGTGCTCTTGCGGATCTCCTTGATCTGCAAGGCATCGACGTGAAACTCACGGGAAGGTTGCCGCTCACCCCGGACGATCTCGTCCATTTGGGTAACGCTTTCCATGAGGTCATCTAGGAACTTGGTCATGCTGTCTATCTCCACTTTTCGAGCCTGACCTTCAAGGCTTTCCGGTCCTCGATGGAGAGGTCGTACTTTTCCTACTCTCTGATGCTGTAGAAGGCCTTGGACATCGAAGAATCGATAACTCGTGCCCGAATACCTGCCTGCTTCACCGCGTCCTACAGCCATTGGCCGGATAGGGTGAAAGGATCGACTGGAGAAA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 32342-32609 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDSV01000032.1 Pseudomonas psychrotolerans strain SB11 contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32342 28 100.0 32 ............................ TGACCACGCCGCTGGATCAGGTGCTGCAGCGC 32402 28 100.0 32 ............................ GTGTAGGTCGGATAGGGCTTCTCGTAGGTGGT 32462 28 100.0 32 ............................ TCGACATCGACAAGCATTTGCAACGGCATCGA 32522 28 100.0 32 ............................ TTGGGGAAGGCTAGCTCCAGCCAGGTGAATAG 32582 28 78.6 0 .....................AA.CCCC | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCACGCCTTCGCCACTGACGCCCTGGCCCTGCATTACGCCCGGCAGGCGATCGATGCCGGCCTGGATCTACAGATCGAACCCGAGCTGCGCGCCTTCTTCTATCTGCCATTCGAACATTCCGAAGCCGTGGCCGATCAGCACCGCTCTCTCGAATTGTTCGAAGCCCTGGGCATCGAGCACTACCGCAGCTATGCCCAGGCGCATCTGGACGTGATCGTCCGCTTCGGGCGCTTTCCACACCGTAACCGGGCGTTGGGCCGGATCAATACAGCGGAAGAACAAACATGGCTGGATGCAGGCGGCGGATTCTAAGCAGGCAGGGCTCAGGCTAGCATATGTCCAGTCTTGGTGAATGACGCTGCATTCACACCCTCTTTTTATACACCCGCCTTACAACTATAAAAATCAATAACTTGGAAAAGGGCGCGAAAAAAAGGGTTTTGCGAGGAAAATCCGGTTAGTCTTCGATATATCAAGGTGTTATGTAGAAAACGCTCTA # Right flank : CCGTATCTCTCTCGACCTACCCGTTCCCCGCCCCATCCCGCCACTCCACCACCAGATCCGCCCGCGCTCGGTCGCCGTCGATCAACCGCGCATTGGGCTCGTCGGTGCTCGCCACCCAGGCCTCGGCGGCTTCCCGGCTACGCCCGAAATGCATGTGCCGCGCGACCAGGCGCTCGCGGCGCTCTTCGGGGTCGACGCGCACGTACCAGCATTCGTCGAACACCTCGGCCACATCGCTCCAGGGTGCCTGGGTCAGCAGCAGGTAGTTGCCCTCGCTGATCACCAGCTGGGTATCGGCATGGACGGGAATGGCATTGGCGATGGGCTCTTCGATCTCGCGATTGAACAGCGGGGCATAGACGGTCTCTCCCGCTACCGGGTCTTTCAGGCGCTGCAGCAGGGCGCGATAGCCGCGGGCGTCGAAGGTGTCCGGCGCGCCCTTGCGTTGGGCGCGGCCCAGGCGGACCAGTTCGCGGTTGGCCAGGTGGTAGCCGTCCATG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //