Array 1 127203-126565 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJVA01000001.1 Escherichia coli strain MOD1-EC1635 MOD1-EC1635_1_length_396442_cov_44.5579, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127202 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 127141 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 127080 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 127019 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 126958 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 126897 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 126837 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 126776 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 126715 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 126654 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 126593 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154090-152902 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJVA01000001.1 Escherichia coli strain MOD1-EC1635 MOD1-EC1635_1_length_396442_cov_44.5579, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154089 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 154028 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 153967 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 153906 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 153845 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 153784 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 153723 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 153662 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 153601 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 153540 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 153479 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 153418 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 153357 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 153296 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 153235 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 153174 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 153113 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 153052 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 152991 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 152930 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //