Array 1 2878-1447 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXY01000101.1 Salmonella enterica subsp. enterica serovar Montevideo strain 12TTU13-1-65-1 NODE_101_length_8095_cov_17.3592, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2877 29 100.0 32 ............................. CCAAATGGCTAAGTGGGGCGTTGGTGGGCGAA 2816 29 100.0 32 ............................. GCCGCTCCGATACGCATTGCGGCGGGGATAAA 2755 29 100.0 32 ............................. GCAAAATAGTCACCTTGCAGGCTGATGTCAGT 2694 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 2633 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 2572 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 2511 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 2450 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 2389 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 2328 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 2267 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 2206 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 2145 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 2084 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 2023 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 1962 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 1901 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 1840 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 1779 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 1718 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 1657 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 1596 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 1535 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 1474 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33905-31923 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXY01000042.1 Salmonella enterica subsp. enterica serovar Montevideo strain 12TTU13-1-65-1 NODE_42_length_43231_cov_17.962, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33904 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 33843 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 33782 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 33721 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 33660 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 33599 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 33538 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 33477 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 33416 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 33355 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 33294 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 33233 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 33172 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 33111 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 33050 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 32989 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 32928 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 32867 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 32806 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 32745 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 32684 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 32623 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 32562 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 32501 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 32440 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 32379 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 32318 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 32257 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 32196 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 32135 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 32074 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 32013 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 31952 29 96.6 0 ............T................ | A [31925] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //