Array 1 525164-524034 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NYFW01000007.1 Listeria monocytogenes strain CFSAN049292 CFSAN049292_contig_0000007, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
    525163	    29	 100.0	    37	.............................	CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC	
    525097	    29	 100.0	    36	.............................	ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 	
    525032	    29	 100.0	    35	.............................	ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG  	
    524968	    29	 100.0	    36	.............................	CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 	
    524903	    29	 100.0	    36	.............................	AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 	
    524838	    29	 100.0	    37	.............................	TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC	
    524772	    29	 100.0	    35	.............................	GTAACAAGTAGTGTTATACCTGCAACAATACCAGT  	
    524708	    29	 100.0	    36	.............................	TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 	
    524643	    29	 100.0	    36	.............................	GTCCACATCGACAATAAAAAACACATTGTATCACTT 	
    524578	    29	 100.0	    36	.............................	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 	
    524513	    29	 100.0	    34	.............................	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG   	
    524450	    29	 100.0	    34	.............................	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC   	
    524387	    29	 100.0	    37	.............................	ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC	
    524321	    29	 100.0	    34	.............................	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA   	
    524258	    29	 100.0	    37	.............................	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG	
    524192	    29	 100.0	    36	.............................	GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 	
    524127	    29	 100.0	    35	.............................	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT  	
    524063	    29	  93.1	     0	.......................C....C	|                                    	A [524038]
==========	======	======	======	=============================	=====================================	==================
        18	    29	  99.6	    36	GTTTTAACTACTTATTATGAAATGTAAAT	                                     	       

# Left flank :   CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG
# Right flank :  GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAACTACTTATTATGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:82.76%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,4.91   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//