Array 1 9554-8795 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LT838852.1 Collinsella vaginalis strain Marseille-P2666, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
      9553	    36	 100.0	    30	....................................	CCGAACTCCAATCATCCGGGGCCGATTCGG	
      9487	    36	 100.0	    29	....................................	ACGCGCGCGCATAATCTCCAACATGGATA 	
      9422	    36	 100.0	    30	....................................	TGACGGTATTTGGGTTTACACCGGGCCGCA	
      9356	    36	  97.2	    30	........G...........................	GGCAGACTCCTACCTCCTCATCGACCCCGA	
      9290	    36	 100.0	    30	....................................	TGGTGGCAATTACGTTACTCTTTTTGAGTC	
      9224	    36	 100.0	    30	....................................	GGCCGTCTCAGCGACCGTGTACGCCATCTG	
      9158	    36	 100.0	    29	....................................	ATAAGGAGCCGAAATGGCAGCAGCAGACA 	
      9093	    36	 100.0	    30	....................................	GGCGTACGAGAGCTCGCACAGCACCGGGTC	
      9027	    36	 100.0	    30	....................................	CACAGACACCGGCGACGACGCCACGCCGGA	
      8961	    36	 100.0	    30	....................................	CCATCATGATGCAACCCATGAAACCAAGAA	
      8895	    36	 100.0	    29	....................................	GGGACGGTCCACCTCCGATGCCCTACAGT 	
      8830	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        12	    36	  99.8	    30	GTTTGATTACCAGTCAGGACGTCACTGCTCCAAAAC	                              	       

# Left flank :   GATGTCCAGCGCCCGGTCCACCGACGCCTGCTTGGTCATGGTCACGATGTGCCTGCGCATCACGGTGTCCGGCTGCTTCCGACACCCGCTGGCGTAGTCGACCACGCGCACCCCGCGATCGGCTCCGCGCCGCACGGCCTCCGCCACGGCCCGCTCAACAGGCAGTTCCTCAGTCCGCATGCCAAAAAACTCTAGGTGTCTCTAGAACAGGGTCG
# Right flank :  CATTGGTGCAAATCCCTCGCTGCAAGAGGGCGGAAATCCTGACTGTACTGGAGCGCTATTCTTCTAATAATTGCAGGTTAACATATGTCTTGACTTCGCGAACGAATCTTCTTGTATCGTGTTCGCGCTCCAAAAGGATCACATTCAATTCATGAAAAAAGATGCGCTCATACGCCTCTATAAGCTCATCTGTCCCTAGAAAATTCTTCAGTCCGATGAAAGCGAGGATACCTTTGAACTTCATATCCGAAACAAAGTCAAGAAACGATATAAAGCTTTCAAGGTACGGACCGTCCTCGCAACGATCAATAACATATGAGTAGGTTTTCAAAAACCTACTCATGCCCCATTCTAGATCGAAATGGTATTCACCATCGATATGAAAACTCGCACGAGAAATGAGACCTCTCATTTGTTTCTCGGTGTTTTCAATTCGAAGCCTCAGTTCCTCATCCTCATTGATGAGAGCCTCTATGACCGAGTGGAGCTGTCCACCCAAT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTGATTACCAGTCAGGACGTCACTGCTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:52.78%AT]
# 	Reference repeat match prediction:         R [matched GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.90,-2.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.78,4.5   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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