Array 1 200845-202664 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCMG01000001.1 Schleiferilactobacillus silagei JCM 19001 strain IWT126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 200845 36 100.0 30 .................................... CCACCGCATAGTCCACAGCGCATTAGACCA 200911 36 100.0 30 .................................... AAAATGATAAGGAGAACAACAATGAAACTA 200977 36 100.0 30 .................................... TTACATACATATAAATTGAACGATAAGTCC 201043 36 100.0 30 .................................... TAGCGATATTGAGGGGTGGTTAAGTTGACG 201109 36 100.0 30 .................................... TTTGTCATACGCTATAAACGCATTCAGCGC 201175 36 100.0 30 .................................... CGGCGTGACCCTAACACCGGTAAAGCGCTT 201241 36 100.0 30 .................................... AACCAACTACGAAATGATCTTTTTGCGATT 201307 36 100.0 30 .................................... TTGAAAAACTATCAATATTGTTTACAACAG 201373 36 100.0 30 .................................... CGGAACACTACTTAGAATTAATGAATGAGG 201439 36 100.0 30 .................................... TTAATTTTTACACCAGCATTAACAGAGCGC 201505 36 100.0 30 .................................... TCTTGATTGGCATTTCTAACGCCTCCTGTA 201571 36 100.0 30 .................................... ACGATCAACTGGTTACATGGTACTGATTTT 201637 36 100.0 30 .................................... TGGCTGTTAGCCCTTGAACTTGACCTTAAG 201703 36 100.0 30 .................................... TGCCATTTTTGACGGCATTGCCCTGGACCT 201769 36 100.0 30 .................................... AATGACCTTTTCTTGAACCTGTGGAGTACC 201835 36 100.0 30 .................................... AGGCAGTGGCAGCGTTTCATCAAAAAATAT 201901 36 100.0 30 .................................... ATTCCACAAGCATACTGGGACGGCTTAAAG 201967 36 100.0 30 .................................... ATTCTAGAAGATTTATATAACTATGCTTTA 202033 36 100.0 30 .................................... CTAAACAGGATGCACCTCAACCAGTTGAAA 202099 36 100.0 31 .................................... AATTAAGTAGTTTAATGACCTGCTCAGGTCA 202166 36 100.0 30 .................................... TGATCCCTTTTAGTGCGTATTGCAAATTAG 202232 36 100.0 30 .................................... CAGATCAACTTTAGGTATGGCAGCAATTGC 202298 36 100.0 30 .................................... CAGAGAAATTGCTCGGGCCTGTTCAACTGA 202364 36 100.0 30 .................................... ACTCATCAGGTTTTAGATCAGTTTGAAAAG 202430 36 100.0 30 .................................... AACAGCGCCAAGAGTTTAAGGGGCATTGAT 202496 36 100.0 30 .................................... TTACAATTGGCTGATGGTACCTATATCAGT 202562 36 94.4 31 ....................T...A........... TTTGGAGAAATGACACACGACCTATTTTTTT 202629 36 80.6 0 ......A.G....A..........A.A......G.T | ========== ====== ====== ====== ==================================== =============================== ================== 28 36 99.1 30 GTTTTAGAAGTACGTTAAATCAATGAGGTTAAGAAC # Left flank : GAATGATTTAGATGCTTTGTTTAAATCCAAAGTGCAACGTAAGTTAACGACTTGGATAGATAACAATAGTAGAGAGGATTTGATTCAACTAACAAATCAAATGAATGATGTCATGACAGATGTTTTGTTTGGCATGGATCTACCGATTACAGTTTCCAAAGAATGGGATTTGTTAAAATGTCTTAAGTTTTTAGGAATTCAATTTACTGAGTTAGCTCGCAACAATCCATATGATATAATTGAAGCAATTTTAAAAATATCACATGATTTAAAAGATTCACAAGTAATTTGTTTAACCAATGTATTTCACTATCTTGACATGGAGCGGTTCTCCGAATTAGCCAATTTAGGGAAGACGTTTGGCTCAAAAATATTTCTAATTGATTTCTCAGAAACTAACCAGCGTGATAAATTTAAAGATTACTGCTATTACTTTATTGATGACGACTTAGTAGAATGGCATGATTGAGTAATTATTAAAATATTATGTTGAAAATACG # Right flank : TATCGATAACTTTATAACTTTTTTAAGCTATAAGCATAATTATATTTTAATGTAGGAGAGAAAAATGTTTCTATCAAGAATTAAAATAACCGACAAAAAGCTACAGCAAATCCAAGAGCATATCACCGTAGAGCCTTCTCACAACTGGGATAAACACGTTTTGCCCGGAGAACTGCAGCCGTCAGTTCCGCGGGAGCACTACTGGCAATTCGAACGGATGAACAAGCACTGGTATCTATATATGTTGAGCGAGGTTGCGCCAAAGGGTGCGAAGGTGGGACCAACTAGTATGGCAACTGGGTTAGCTTCTAAAGCAAACGAGCATTTACTAGATTCTTTACTAGCAGATCAACCCATCAGATTTCGGATTACCGCCAACCCACCGCGCACTGGTGAAAGTGATGAAAAATTAGATCCGCAGGTAATCGTTGCAGAGCAACGGGAATGGCTGCTTAATCAGCAAGCCCAAAATGGTTTCCAGATTCTGAGACAGATTTCGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTACGTTAAATCAATGAGGTTAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 219847-221339 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCMG01000001.1 Schleiferilactobacillus silagei JCM 19001 strain IWT126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 219847 28 100.0 33 ............................ TAACAGTAGTTTTACATGCAGGGGTATTATTAA 219908 28 100.0 33 ............................ CATGAGCCGGTTTGCTACGGTCTACGCCGTGGA 219969 28 100.0 33 ............................ CACGACAACCAGACGAATAACTGCACCCGAACT 220030 28 100.0 33 ............................ CAAAATTGTCACGCTGCTAAAAGATGAAACCAT 220091 28 100.0 33 ............................ CTAAACTGCCAGGCGCTATGCTTTCCCGCGGGC 220152 28 100.0 33 ............................ CTTGCGTGGTGGTTATCGTTGGGTCAGCCAGTG 220213 28 100.0 33 ............................ CGGCGCTGGGACGATTGGGTAGTCTTACTCGAA 220274 28 100.0 33 ............................ CCGTTTTTAACTTGGTTGAGGTCTATTGCTGTG 220335 28 100.0 33 ............................ CTACTACGAAGACTGGGAGTATGCCCTGTTAGC 220396 28 100.0 33 ............................ CTTGATTTGATGTTGAGCGACTTTTCCGTTCAG 220457 28 100.0 33 ............................ CTCAAACCGGTATCATCGGCATACTCAAGGTAG 220518 28 100.0 33 ............................ TGAAGTGAGACTAAAATAGAAAGTGAGATCTTG 220579 28 100.0 33 ............................ TGTAAAACGAAACAAAGCGGCTGTAAAAAGCGC 220640 28 100.0 33 ............................ CATTTGGGCTAAAGCAGTCCATCTGAATTGTCC 220701 28 100.0 33 ............................ CACAGCCCATATGCTCACCAGCAACGCCCATCC 220762 28 100.0 33 ............................ TGAATTTATAAGTAATGAAAGTGACGGGGCTTA 220823 28 100.0 33 ............................ TCGCCTACAAGCTCACCGGATGCCAAATTGTAC 220884 28 100.0 33 ............................ CTTGTCAATTTCCTTTTGCATTTGTTTGACCGT 220945 28 100.0 33 ............................ TTCTTACGCGATGGCCGAAAGCCAAACTCATGA 221006 28 100.0 33 ............................ CAAGGGACAAGAGTACGCGACTTTCACAGAGAC 221067 28 100.0 33 ............................ CGATCAGGATGTGCCGATCACTACGGTTGATAA 221128 28 100.0 33 ............................ TAAGTAACGTTAGTAGCGCACATGATTGTAATG 221189 28 100.0 33 ............................ CGCCGGGAAGCCTTTAGACTTTTCCAAGGATGT 221250 28 100.0 33 ............................ TATTGGCGAGGGCAGAACCATGAACCTTTACAA GC [221265] 221313 27 82.1 0 ..............-..A...T....TT | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.3 33 GTATTCCCCGCGTATGCGGGGGTGATCC # Left flank : TGCCAGCAAAACGTAACGCGGAGATTCAGCAACCGGATGAACCGATTGATTTTATTACATTATTAGAGGTTAGGGCCGATGAGCTAGAAACTTTCATCGAGGACTGGAAACGACGATCGGTGATTATGGAAAAGGCGGATGGCTTCATTTCGGATACCTTGGAAAAATCTCAACTTAGTGACAGCGCCTACCAGATCATTAATATTTCCCACTGGTCGTCTTACAATAAGTGGTTAGCAGCTACGAATAATCCAACGTACGCTGCTCAACTGGCGGCTGACCATAGTCGGGCAACACACGTAAAAGTTACGCGCGGTTTTTATCGGCCGGTAGCGGGCGGGATGCATTTTTATGATTAGGAAAGATGGCGTAGGTGAGAGCAAATCCTAGAGATGGGGATGCTCTTTTGTTTTAGGATTAACATTTAATTAAAACTAAAAAGTGATGGAAAACGAAGAAAATATCATGTAAGATTGTTGTAGTGACGGGATTTGTTTAGT # Right flank : TCTTTAGTACACTATGTACTTATTCAGAATTAATGTATTTCTTGCATATTTAGGGGCGATATTCCATACATAGTATTATAATAAGAAAATAACCGAGAAGATGAAACGATTAAGGGCTTTTCAAATGATAAAAAGATTTGTGAAAAGTAGATTTGTATAATCTGTTTTACAACTACGTTTACAACGCTTTGAAAACATAAAAAAGAATTTGATCATTTTGTTGTATGTTTTACCAAGTGCTTGATTATGACCGCATAGGTATGGGTCACTGTATGTATTATAGGTTGAAAGAATTAAGTAGTTGGATAATTAGCTAACAGTCGGAATGTAAGAAAACTTATGAGTATCTTGTGTTTTAAGCGAGTGGTAATGTTCACGATAGTCTATGTTATCAGCACCGTTTACTGTTGGAGATACACCTTTTTATTACTGCTATTAGCTATAATGGGGTTATTTTGTTTGTTCGTGGGCAACTGATGGATTATGGGAACCAAAGGAGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 232377-233848 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCMG01000001.1 Schleiferilactobacillus silagei JCM 19001 strain IWT126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================== ================== 232377 28 100.0 33 ............................ CGTCTACTGGAATCGATTCGATTGAAGCAGACC 232438 28 100.0 33 ............................ CATGCACATCTCAGGTGGTTCAGTATCCGACCA 232499 28 100.0 33 ............................ TGGCGTTTGGCGCGTTTAGTACCAATGCCCAAG 232560 28 100.0 33 ............................ CTGAATCTCACTAAGCCTAGTAGATCAGAAACA 232621 28 100.0 33 ............................ CTCCACGTCCGTTATTAACGTCTGTTACACTAA 232682 28 100.0 33 ............................ TTTCACGTCCGGCTTAGCCTTAGATGATACCGT 232743 28 100.0 33 ............................ CATATCCAATTTTAATTTTCGACTCAAATTGTA 232804 28 100.0 33 ............................ CACCGGGGAAGCATAAAAACTTTTATGGCCCGG 232865 28 100.0 33 ............................ TCACAAAATTGATTTAATTAACTCGCTTTCAGT 232926 28 100.0 33 ............................ CACGTGGAGCCTGATTCACTAGATGAATTTTTT 232987 28 100.0 33 ............................ CGAATCCGAAACAACTAGATACATGAAAGAAAA 233048 28 100.0 33 ............................ TCAACACGAAACAGGGCGAATTTAAGATTTCTA 233109 28 100.0 33 ............................ TAGAGAGCATCTTTACCTAAATCGGTCAGTTTC 233170 28 100.0 33 ............................ TACCACTATCGAAAAAATTAAAGTTTCAGTTAC 233231 28 100.0 33 ............................ TGCCTTGCAAAAACACTATTGAAAGATGAAATA 233292 28 100.0 33 ............................ TGGGACACGTGAATACCCGAATAGCCTTGATGA 233353 28 100.0 33 ............................ TGCACTTGTAAGCAAGCGCACGGGTTGGAGCGT 233414 28 100.0 33 ............................ CGCACTATTTCGGTTAAGTGACGACTATGAAGA 233475 28 100.0 74 ............................ CAAACTTTACGTTTTTGCTCAAATTTAAAGTACGTATTCCCCGCGTATACAAGTGACAGCGTTATAGACTTATT 233577 28 100.0 33 ............................ TAATTTGTACTCGACTTTTAATTTTAAACGACA 233638 28 100.0 33 ............................ TTAAAAATGATTGATACTATGGAAAAAGTCGAA 233699 28 100.0 33 ............................ TCTAAGATCAGAATAAATCTTAGGTTGGCTTTT 233760 28 96.4 33 .......................A.... CGTTGATCAAACACCCAAGATGGTCAACAATCC 233821 28 89.3 0 .........A......T.........T. | ========== ====== ====== ====== ============================ ========================================================================== ================== 24 28 99.4 35 GTATTCCCCGCGTATGCGGGGGTGATCC # Left flank : GTGAAGAATCAAATTATTTCTATTGCTGCTTTTAAAAGTATTGGGATAAAAGAATGTCAGCATTTTGATGCCTATATTAGTATTGATCAACCAGTTCCTGAAAACATTGTTAAATTGACGGGGATTACGGATTCAAAATTAAAGGATGAAGGCATTGAATTAGTTGATGCACTAAGAAGCCTGAAAAAATTTGTTGGGAATTTACCAATTGTTGGTTACAATTTAGAGTTTGATGATAAATTTATTTCACTGGGATTTAAAAAATACAATCAAAGTGGAATAGATAATAAGATGATTGATTTAATGCCCTTAGTGAAAAAAGCAAATCGGTTTTTGGATAATTTTAGATTAAATACAGTTTTGAAAAAGTATGACATTTCTAATGAGCATCCACATGAGGCATATGCAGATGCACAAGCAACCTTGGCCCTTGCAGAAAAACTCATAAAAAATGGTGATTTAGTAATTTAAGAATGTTGATTTATAGGGATTTATTTAGT # Right flank : CTATTAAAGAACGTGCCTAACTACGTATTTCCGATTATTTTCCACTGCCTTTAATATCCATTTAAAGCGACATATTACTTATGTGTTTCCAGTATAGAAAATTTCGTGTTCCCCATACAAACGGGAGTAATCTTGTTCAGATGAGTCGGATGAGCAACAAATCTGTTATTCTCCGCGTTTTTACCTAGTTATTAAGACGGCACGGATTATATTTTTTATAAATATAAGATTTTTTCGAAATAAGGTTAATAAACGGATTCCAGGACTGAAAGAGGTGACTTAATGATAAACGATAATCAATTTCAAATTTCTTTAAATGAAAAATTGTTGATAAGTATACAAAGCTATCAAAAAAAGCTTCAGTTAACGAATCATGCTATCCTAAACATTATTAGTTATGAACCCACAAGAGAGAATCAATTTTTCGCTGGGGAGGCTAGTCATACTAGCTATGTAAAAGCCGCATACGTCTTAGATTCAATTTTTCAATTTTTAAAACA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //