Array 1 41939-42632 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROR01000070.1 Clostridium coskatii strain PTA-10522 CLCOS_contig000070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 41939 30 73.3 36 GCAAGTG.....G................. ACATACAATTGGTCAACAATTGGATGCAGGGGTATA 42005 30 100.0 38 .............................. TTTCATACTGATAATTCGCCAGTTGTTTTTGTCTTTCT 42073 30 100.0 37 .............................. ACAAGAAATACATCTGCAGCATGTTGTAAATCAACTC 42140 30 100.0 37 .............................. AATTTGTTGCAAGAACAAAATAATCAGACTTGGCAAA 42207 30 100.0 36 .............................. GCCCATTAAGTGATTCAGCTAACTATATGCCAAATA 42273 30 100.0 36 .............................. ACGAGCTTCTATAAAAGGAAGTGAGATACTAATGTT 42339 30 100.0 36 .............................. CATTAGAAAAAGGGAATAGAAGTGTTTTAGATTATG 42405 30 100.0 35 .............................. TTTCAAAAAGCAATAGATGATGGATATACAAATTT 42470 30 100.0 36 .............................. GCGTAACTAATAATTCTACTGCGGTTACAGGATCAA 42536 30 100.0 37 .............................. TTTATATACTTACAACTAAATAAATTACAATAATTTA 42603 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 97.6 36 ATTTAAATACATCTCATGTTGAGGTTCAAC # Left flank : TCATTCTTTCATCTCCCAAAAATAATTTTCACTGTCTTCATTATATTTTATAAAACCATTCTTTTGCAAAACTTTTTGGGATGCAGTACGAATCAGATAACCTCCAAAATTTTTCAGAATTAAAAAATTGCCTTCAGCTTTCTGCCAAAGACGATTTTAATTATTTCATTTTTGATAAGATTTTTTGTATGGTTTTAGGAGATAGATAGTATGTTTCAGAAAGGTAGTCTATAGATGCTCCCTTTCTGTATTTGCTGTAGATTTCAAGGTTTCTGTAAAATAATATATTTCTGCTGCCATTTTTCTCTCCCCAGGTTTTTCTGTTGCATTGTTTTCTCGGTATATAGATATATTCGCCGTCAATATAATCCTGAATTTGAGATACAAGTTCTGATGGTAATACATCTGCTGCTTTTTTATAGCCCAATTCCGTGCTCCTCCTAATATATATTTTTAGGATTGTGCATAGGCTAATACATCACTTATATAAATAATTTTCT # Right flank : CCACAGTAAAATAGCCATTCCTTATTCTCATTATAACCCTAAAGCCCTTAACAATAAAGGCATCCGCTGAAAATTTTCCAACCGTTTTTGAATTTTCATAAACTTATAAAAAAAGTGCCTCAATCCATTACATATCAATGCATTGAAGCACTTCAAAGCTTCAAAGAGGTTGGAAAAATCAAAGTATTAAATTTTCAGTATTATTTTCATTTATCCCTAAAGTATCCTCCTCAAAACAGCTGTCATTCATAAGCTTTATTATTGTGACAAAATCCTTATCCTTTATAATCTTATTTAATTCACTCTTCAACTTTATCATTTTAGAAGTCGTTATAGCGCCTCTAAAAACAGAATTCTGATGGTGGTGGAAATATTTTTTGCATACTTTAAATACCTTATTTACCCTTTTCTCATTTACATCATAAAACACAAAAGCATAGTTGAAATTAAAATTTTTCCCCATAAAGCTCCTCCAATTATCACATCATATTTTTCAGGCT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTGAGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 51469-52163 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROR01000070.1 Clostridium coskatii strain PTA-10522 CLCOS_contig000070, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 51469 30 100.0 36 .............................. TTTTCTGTTGTTGTCCATAATTGCATTGCTAATTTT 51535 30 100.0 36 .............................. GAAATTGAAAGAAGGAAATCAGGAAAGCGTTATTGA 51601 30 100.0 36 .............................. ACCACGGATAGTAGGAATGGTAAAAGCTACATATGA 51667 30 100.0 36 .............................. TAAATTTGGGGGATATGAAAATGAAAATAAAAACTT 51733 30 100.0 37 .............................. TAATTCAAAAAGCAACACAAGGACTTACAAAAAATGA 51800 30 100.0 36 .............................. ATCATCATAAGGTCCAAAACTTCTATAATATAAATA 51866 30 100.0 40 .............................. ACTACAAATACGGGTTTAGTCTGTTCTATATGAACCTTTA 51936 30 100.0 36 .............................. GAACTATTCAGAACTATAAGTACACAGTTCAGAACC 52002 30 100.0 36 .............................. TGATTTCACTGTTTGTGGGTATACCGCTGGAACAGC 52068 30 100.0 36 .............................. AGAGTAAGTATTATCATAATACTGTGTATTCACTGC 52134 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 11 30 100.0 37 ATTTAAATACATCTCATGTTAAGGTTCAAC # Left flank : TTAAGTTCATAATATCTCATAAAATCACGATCCTTAATAAATGTTTATGATATACCAAATATACAGATTGGTTTACTAGTAAAAGTTATTAAAAATGTGTTTTTATAACTTTCACATTTGTTACATATTCCAATCTAATTATACTATTATTTATCAATTTTTGTAATATATTTTATAAAATTACAATCATTTTCATATAGCAACCTAACTATACTAATTGCCTTACTAAGGCTTACTCATATTGCACCACTTTTTTAATATACTTATTGATGAATTTAATATAATTAAATCAAACTAATAGTGAAGTTTACTGGCCTCTTATTTCTAATTTTTAAAAATAATTATTATAAATAACATAAAATTATAACAATAAAACAAAAATCTCCATATAAAACTATATTGGAGACATTGATTACACTACATGTATGTTTCAATATTTATAAATTTAAACATCGTATGTTACGGTTAAAATATTTTTAAATAAGCAAAATACTTATTCA # Right flank : CCACAGTAAAATAGCCATTTCTTATTTTCATTATAGTCCTAAAACCCTTAATAATAAAGTCATCAACTGAAAATCTTCCAACCGTTTTTTCAATTTTCACAAACTCAGCCAAAAAGTGCCTCAATCCATTACACATCAATGCATTGAAGTACATTCTATCTTCAAAGAGGTTGGAAAAAATCTATCCCGGATATTTAGTTTAAAACACACCATAAGTTTTTGCCACAATTCTCTAACCATTTTTTAATTTCAAATAAAAAAGCATCCTTAAAGCTCACTTTCAAAACTTTAAAGATACTTTATTATTAAATTCCATATCTTTTCAAATCTTTTATGGTTTCTATATCAAATATGTCCTCTATAATTGAATTTAGGCTGTCACTGTCTAATAATTTTACCTTTTCTATCACAGGTTCATCTACATTCTTAAACTTTTTGTTTAGTAATTTTATAACTCTTTCAATATCCTTCAACCTAGATTGCTCTCTCTCTTCTTCTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAAGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 53910-53616 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROR01000070.1 Clostridium coskatii strain PTA-10522 CLCOS_contig000070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 53909 30 100.0 36 .............................. ATGACAAAGGAAGAAGAAAACGAAAGGCTTAAGGGA 53843 30 100.0 35 .............................. GTAAAACTTCTTTGTGTTGCTGCTTTAGGATTAGT 53778 30 100.0 35 .............................. TGTAATGAATAAAAGAATTAGTATGTTCAATTCTA 53713 30 100.0 36 .............................. TCTCTTTCAAATAGTTTTTTCTTAACCGTTTGGCTG 53647 30 80.0 0 ............T...GC..A.T...G... | C,C [53621,53628] ========== ====== ====== ====== ============================== ==================================== ================== 5 30 96.0 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : CTTTTCTTAACGCAATACATCCTACAGAATTATTGTCAATACTTGCAATATATAATCTTCCTTCTGGCAAACCATACTTTTCTGCTATTCCATTTATTTCATCACTATAATGCTGCGATTTCAAACACGCAATAACTTCTTCACCTTCCGCTAATATACTTTCCGTATATTCTTTAAATAATTGGATTAATTCTTCTTTTTCCTTATATGCCAATCTAATCGTTACATCCATATTGGGTACCTCCCTAAATTACTATTTATCTGTATGCTGTACAAATAAATTATACTATTTTATACAATATGTTACTATATTTTGTTGAGTATTTTCCAACCAATTTGAGGGATATAGGTGCTTTAAGCCATTTGAATTCAATGGATGAGGGTACTTTTTTTATTGAGTTTGTGAAAATTGAAAAATGGTTGGAAAATTTTCAGCGGATGCCTTTATTATTAAGGGTTTTAGGAATATAATGAAAATAGAGAATGGCTATTTTACTGTG # Right flank : AAAAATAATAATCTGTAAATATTTAAAAATATGTTGGATAGAAAAACATAAATGCTTTATAATTAGTACTAAGAAGGATAAACATAAGAGGATGTGGATGAGATTTGGCAAAGAAACACGATTTTGATGCAGCGTGGAAATCAATTTTGGAAGCCTTTGAAGTAGAAATAGTAGAACTGCTTTTCCCGGAGATATTTAAAAATATAGCATGGGAATATGGAACAGAATCTTTAGATAAAGAACTTCAAGAAATACAAAGGGAAATTTTTGATAGAGATAGCAGTGAAAAGGTAATATCGGATAAAATAATAAAGGTAAAATTAAAAAATAATAAGAGTAAAATATTGTTTATACATGTGGAAGTACAAAGTTATGCCAGCTGTGATGAAGTATTTGGAGAGAGAATGTTCAGATATTTCTATAGAATCTGGGATAAATTCAGGTATAGGTATGAGGACAAATCGGAAATAGTGGCAGCAGCGATATATACATATAAGGGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 4 68430-67472 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROR01000070.1 Clostridium coskatii strain PTA-10522 CLCOS_contig000070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 68429 30 100.0 36 .............................. AATGAAACAAGCTAATGAGGACGGACCAAATTTGGA 68363 30 100.0 36 .............................. TCAACGCCTTCCATCCAATAATCCATGGATTTTCCA 68297 30 100.0 36 .............................. GAGGAATTATGCAGTGTTAACGGTGAGATAGCTGAT 68231 30 100.0 35 .............................. AAAGAAAAATGTAGCGTTTTTGTTTACTCAGCATG 68166 30 100.0 36 .............................. CAGCAAATAACTGACGATGCTGATGGTTCTAAAAGG 68100 30 100.0 36 .............................. TTAATAATGATACTGCTGCTATTTGTGGAGGCACTG 68034 30 100.0 36 .............................. CTCCTTAACTATTGTGTTTTCACAGGTTTCGTTGAA 67968 30 100.0 36 .............................. TTTGTTTTTACATCATATTCTTTAAAAAACGATTTT 67902 30 100.0 36 .............................. TAGTTGCGTATAGATGTATCAGGAACTATCCGTAAT 67836 30 100.0 38 .............................. TAATAAAACTTTAAATACATCCACTTTTTCTAGATATT 67768 30 100.0 36 .............................. CATCTTTTATGTCGCTTAGTGCTGATTCTATTTTTT 67702 30 100.0 37 .............................. AGGTGCAACATCTAATACAGAATATACAAAATTTACT 67635 30 100.0 37 .............................. TATAATCCCTTCCTTATAAATTTGTATTTCCGCATAA 67568 30 100.0 35 .............................. TTCTTGGTTATAATTGTATTAGATGCATTAGGACC 67503 30 83.3 0 ...............A....C..AA....A | AG [67476] ========== ====== ====== ====== ============================== ====================================== ================== 15 30 98.9 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : ACCGTTATATTTGTTTTTGATAATAATAAATTAATTGGTTTTGGTCGTGCAATTTCAGATGGAGTTTATCAGGCTGCAATTTATGATGTAGCAGTATTACCTGAATATCAAGGTAAAAATATTGGAAGAACAATTGTTAATGGTATTTTAAATTGTATTCCACAGTGTAATTTTATATTGTATGCTTCACCTGGTAAAGAAGCTTTTTATGAAAAATTAAGTTTTAGAAAAATGAAAACAGGAATGGCATTGTTTTGCAATAAAGAAAAAATGCAGACAAAAGGATTTATTGAATAGATCCTGGCAAGTGAAAGTCAGAAACGTTTTTCCAACCAATTTGCAAAGCACAAGTGCCTTAATCCGTTTAAATTGAATGGATGAGGGCACTTTTTTGATTGAATGTAGAAAAGTGAAAAATGGTTGGAAAAATTTCAGCAGATGCCTTTATTATTAAGGGCTTTAGAGATATAATGAAAATAAGAAGTGGCTATTTTACTGTG # Right flank : GATGACAGTAAATATGAACTTTAGTATGATAGAATATATGGAATAAAATGTTTATCATATATAAATGGAGGAATGATGCTATGGGAGAATTGTCCACCTTGCCCAATATTGGAAAAACAGTTGAACAACAATTAAATCAAGTTGGGATAGAAACAATAGAACAATTAACTGATATCGGAAGCAGGGAAGCTTGGTCTAGAATAAAAAGCATTGATCATTCTGCGTGTATAAATAGGTTGTATGCTTTGGAGGGTGCCATAGAGGGAATTAGATGGCATAATCTTTCAGAAGGAGTAAAAGAAGAATTGAAAGATTTTTACAATACATTTAAATAATTGTGCAATTAGTTGGATGTATGAAAAATTGATTATTGACTGATGCCTTGGGTACTGGTTTATACTATGAATAGTATCTAAGGGGCAATTTTTATATGTTATCTATAGTATGTAGTATATATAATCCTTAATACAACAAGTAAATATAAGAAGTAATGTAGAATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //