Array 1 37705-38692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFEQ010000028.1 Pseudomonas aeruginosa strain 16048 scaffold28.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37705 28 100.0 32 ............................ TGACGGCCGAGCAGGTCGGGCAGATGCTGAAC 37765 28 100.0 32 ............................ AGCTGATGGCGGATCGCGACCTGACGGCCGAG 37825 28 100.0 32 ............................ ATAGACCTGAAAGAGGCTGCCCAAGTCCTGAT 37885 28 100.0 32 ............................ TGAGGATCGATGGCCACCACGCACCGCTTGCG 37945 28 100.0 32 ............................ TGGTCGCGCTACACGCAGTGATCGAGCTAGCG 38005 28 100.0 32 ............................ TGGCGCAGGATCGCGTCGATCTCAATCTCGAA 38065 28 100.0 32 ............................ TGCCCCTACGGACTGCACATGCTCTATGAGCG 38125 28 100.0 32 ............................ GTGAACGGCACGCGGTATTGCTCGCGGTCTGC 38185 28 100.0 32 ............................ CCTCAACGCAGGTGATGGAAAAGAGGGGGCAA 38245 28 100.0 32 ............................ AGGGTGTTGCGCGTGCGCGGATGCACCACGGT 38305 28 100.0 32 ............................ TTCGACACGACGGCTTGCTGGTATGAGCATCC 38365 28 100.0 32 ............................ ACCACCTCCGGCCGCTCCGCCTCTGCCTGCGC 38425 28 100.0 32 ............................ TTCCACGGCTCCTTCGAGGACGCGGTATCCGA 38485 28 100.0 32 ............................ AGCGTGACGCAGCCGTGCCCGGCCTGCTCGCA 38545 28 100.0 32 ............................ ACCTGGGGAATGTCGAACGGGAAATCCTGATA 38605 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCCTAGGGCGA 38665 28 78.6 0 T.........AC.....TC..C...... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGCCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTCTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAACCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGATTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCTCGAAGGTCTTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48206-47217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFEQ010000028.1 Pseudomonas aeruginosa strain 16048 scaffold28.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48205 28 100.0 32 ............................ ATCGCCACCACCAGTTCCACCGCCATCACCAC 48145 28 100.0 32 ............................ GTGCTCGCTTACTGTTCTGACCAGATGAACCT 48085 28 100.0 33 ............................ AATCCGCCGCAGAGGCCGTGCCCTTGGCAAGGT 48024 28 100.0 32 ............................ GAACTGGGCGCCGCATCGCGGGCCATCAGCAT 47964 28 100.0 32 ............................ TACTGGGGAGCGAAAGAGTCCCGTCTAAAGCG 47904 28 100.0 32 ............................ CAGGATTACCCGAATCAGCCGCACACGAATTA 47844 28 100.0 32 ............................ TGAGAAGGAGGGCGACATGCCCCTGACCCCCG 47784 28 100.0 32 ............................ TTGACGGAGAACCGCTGGAGCGGCATCCGATC 47724 28 100.0 32 ............................ TGGCATCTGGCGTTGTGGTACTTCTGGTCCTC 47664 28 100.0 32 ............................ AGCACTAGGGCCACCCACGCGGCCAGGCACGC 47604 28 100.0 32 ............................ TATTCGAGAACGATTATGGCCGACTTCTACGG 47544 28 100.0 32 ............................ GAAGGCCTCGCTGTGGATTGCGCAATCCACAT 47484 28 100.0 32 ............................ TGGAACGTGGGCGCTGTAGCCGTAACGCGGGC 47424 28 100.0 32 ............................ AAGAGTCGCGGCGACAACTACCAGACGTCCGC 47364 28 100.0 32 ............................ GTGGAGCGGTTGAACGCAGCCAACCGCGCCTT 47304 28 100.0 32 ............................ TCAACTAAATGGGTCGTACGTGGATTGGTGCG 47244 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGCGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGCCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGGCTCTGGCAGGAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGTTTCACTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTCCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCCTGGAAGCTCACGCTCCTCATACAGACGCAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGTATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATCTCCCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGATGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38158-37889 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFEQ010000029.1 Pseudomonas aeruginosa strain 16048 scaffold29.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38157 28 100.0 32 ............................ CGCTTCCACCGCCGCCGCTGCCTTGGCACTTG 38097 28 100.0 32 ............................ AACTGGCGACCGGCTTGTCGCACTCGCTACAA 38037 28 100.0 32 ............................ AGCCACAACGGCGAGGCACCAAGAAGGATCGA 37977 28 100.0 32 ............................ ACGGTCCCTTGCTCGCGCCGACCAAGCGCCCC 37917 28 82.1 0 ......................G.CTTC | C [37891] ========== ====== ====== ====== ============================ ================================ ================== 5 28 96.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCGCTTCCCGCACAACGCCACGCTGTACCTCGACACCCAGGCGCCACCCGGCCAGTTGTTCGAAAGTGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCACATCCCAGGCGCGACGCCCCCGGCTTGGCCGGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTCGCGCGCGAACGGCGAAGCTCACCGCCCGTCCCGCTCATCACGAAATAGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : CACTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGAAGACAATGCCGTTCACACCCGGCTTTCCCCTGACGAAACGAATAGCCTGTCCGTCTCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGTATGAGTGGGATGGACCTCAAGCGCCGTCGCGTCGTGCAAGGCCTGGGCGCTGGACTGCTGTTGCCGGCGCTGGGAGCGCCGGCGCTGATCGCCTCGCCCAGGGCGCGGCCGAAGCTGACCGATGGCGTGCAATCCGGCGACGTGCAGGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGCCCGGCGCGGATGATCGTCGAATGGGACACCCGTAGCGTCTTCAGCGAGCCGCGCCGGCTAGTCTCGCCGGTCACCGACGAGCGCCTCGACTACACCGCGCGCATCGACCTGCGTGGCTTGCCTGCCGACCAGTCGA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 53715-54042 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFEQ010000039.1 Pseudomonas aeruginosa strain 16048 scaffold39.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 53715 28 100.0 32 ............................ AACTACCGAATTAACGTTATCGTCGATCCATC 53775 28 100.0 32 ............................ GGGTGCGCTTCGGCGTTGCGCCGCGATGGAAC 53835 28 96.4 32 .....T...................... TCCGGCCCCACTCGGTCCGGACTGTGCAGCGC 53895 28 100.0 32 ............................ AGCTCGGACCCGAACTTGATCGGCAACGCTCC 53955 28 100.0 32 ............................ AGTCAAATACAGCCTGTAAGAGAACCCCCATT 54015 28 78.6 0 .C..........A....TG..C.G.... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 95.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACCGCTTCCCGCACAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCAGTTGTTCGAGAGCGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCTTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCCGTCCCAAGCGCGACGCCCCCGGCCTGGCCAGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTTGCGCGTAAACGGCCAGGCTCACCGCCCGTCCCGCCCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGCTTCTTACGCCCTTTAAAATCAATAACTTACCAAGACACGAAAAAAGAGGGTTGCAGACCAGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : AGCCGGCTGCGTATCCCAGTGATGATGGGGGTTCCAGAGTCCACACACTGGAAGTTCCGCCTCGCCGACTTCATTGATTGCGCCCCACCGTGCCGATGATTTTGCCCCCGGCAGCGGCAAGGAGCGGCTACTCCGCTCGCCCCATCATCAATGAAAGTTAAAGAATCGTGCGGTCTCGTATCTACGACAGCAGTAGTCGAAGTGCACAGGAAGTTGCGCCTTTCATCTCCATTACTTTCGCGCGAGATATATCGCGCATGAACGAATGCAAGGATTCGCACATGAGTGGAAAACCCGCCGCCCGCGCCACCGATCCCACGGCCTGCTCTCTGCCGGGTCACGACACCAGCCCCATCGTTCAAGGCTCTCCCGATGTCATTTTCGATGGCCTGCCCGCCGCACGACAAGGCGACGCCTCGGCATGCGGAAGCCCGATCGCCTCGGCCGTTTCATCGACGGTCTTCATCAACGGCCAGCCCGCCGCCACCCTGGGCAGTGTG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //