Array 1 285863-282527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBFI010000019.1 Leuconostoc gelidum subsp. gasicomitatum strain A.21.4 NODE_5_length_285826_cov_69.754494, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 285862 36 100.0 30 .................................... CCTTGATAATGATAATTTTACTAACGTTCA 285796 36 100.0 30 .................................... AGTTGTCATGTACTGTTCACAACCAACGCA 285730 36 100.0 30 .................................... GCTTGACAATAATTGTAGGCGTGCTATACT 285664 36 100.0 30 .................................... ATGGTTAAAATCTATTGATGAGAAAGATGC 285598 36 100.0 30 .................................... GGCTCACATTTCCAATTAACATTATTGGTG 285532 36 100.0 30 .................................... CAGATAGTGTGCTAGTAGACTTACCTATTG 285466 36 100.0 30 .................................... TATGGAAGGCTACCAATATGCTATCACTAT 285400 36 100.0 30 .................................... ATCTTTCTAACGCTTCAATCGTTCTAGGGT 285334 36 100.0 30 .................................... GCTGTTGGCGAAATATTACACTAACGTGGC 285268 36 100.0 30 .................................... CTCAGCGGTCAACTGCTGCATACCCGATAG 285202 36 100.0 30 .................................... TCATCTCGTCTTTCACGTCAACGTTTTTCA 285136 36 100.0 30 .................................... GTTAAACAAATTCGGTGCCACTAACAACAC 285070 36 100.0 30 .................................... CGTCCGGTCTCCACACTTTCAATCATGCTA 285004 36 100.0 30 .................................... CGACGATGTTAATAATCATTACTACTTAAT 284938 36 100.0 30 .................................... ATCTGTATTCGGCATGATGTTCGAGGAGGG 284872 36 100.0 30 .................................... AGACTATCCGTCTTGTCTGGCGATGTCATG 284806 36 100.0 30 .................................... AAGCTACATGATTGGCACCCAGAAGTGAAA 284740 36 100.0 30 .................................... TTCTTGATAAGATTCAAAATGGGAAGTTAA 284674 36 100.0 30 .................................... CGCATTCCAAACCCACAAACAGAATGCCAG 284608 36 100.0 30 .................................... AAAATCAACCATTGATGATATTGATGACGA 284542 36 100.0 30 .................................... GTCACTAACCGCAGCATCAAGCAAGGGTTG 284476 36 100.0 30 .................................... CCGTCATGATGATATTGTTTGCAACCACCG 284410 36 100.0 30 .................................... GCAAGTATTCAAGATGTGGTTTGAGGAGTG 284344 36 100.0 30 .................................... CAATGGGGAATTAATTCGTTATGGCGGGGC 284278 36 100.0 30 .................................... GGATAATAATGACACCTATAAAATAGCCTA 284212 36 100.0 30 .................................... TACCAATACATTAGAATCAACACCATTTCC 284146 36 100.0 30 .................................... TCTGGGTACTGCTATCATAGCTAGACCACG 284080 36 100.0 30 .................................... GTTAGGTAAGGATAGGTTAGGTAAGGATAG 284014 36 100.0 30 .................................... TATTACAACAGGTGATGTTAAATGAGAGAT 283948 36 100.0 30 .................................... TCGTCACACGACCGTGGCGGTTGTCCATAA 283882 36 100.0 30 .................................... AAAACACGAACCTAAGCCTTCTACTATTGA 283816 36 100.0 30 .................................... AACTATTTATGTTTAAGAGCAATTTTTCCT 283750 36 100.0 30 .................................... AGCTATTTGTTGGGTAATTGTATCAGCAAG 283684 36 100.0 30 .................................... TAGACCAAAATTCAAACCAAAATTGTTTTT 283618 36 100.0 30 .................................... AGAATAAAGAAGTATATGCTTGGGCATATT 283552 36 100.0 30 .................................... AACTATTTATGTTTAAGAGCAATTTTTCTT 283486 36 100.0 30 .................................... GCAAACAGCTAACTTGTCGAACGCTTCTAT 283420 36 100.0 30 .................................... GTTCGTAAGCTGCTTAACATTACAGATGTT 283354 36 100.0 30 .................................... AAGATTATGCGAGATCTAACTGGAGTATAG 283288 36 100.0 30 .................................... GTACATGATATTAAATATATCTCTGCTGAT 283222 36 100.0 30 .................................... GACAACCTTAATGGACGCGTACAGGCTTAT 283156 36 100.0 30 .................................... CAATTTCATCAACCCATGCCGGTATCTGCG 283090 36 100.0 30 .................................... CCTCCTATGCTGTTTTCAAAAACTTGTTGA 283024 36 100.0 30 .................................... AATCAAACTTAAACTTACGATTAAGCTGTT 282958 36 100.0 30 .................................... GAAAAGCTAAAAAGAGCCGAACAATATGCA 282892 36 100.0 30 .................................... TTGTCAAGCATGAAGAATACGGAATATTAT 282826 36 100.0 30 .................................... GCGTTGCCTTATCTAACTGACCTTGATAGC 282760 36 100.0 30 .................................... TTACTTGTGTCAGTACTGCAAGGTTGATGG 282694 36 100.0 30 .................................... GACAAATACATCTGGTTTGTTAGTCTTGGC 282628 36 100.0 30 .................................... TAAACTCATAGCACATTGAGTATCCCAGAC 282562 36 94.4 0 ..............................C...A. | ========== ====== ====== ====== ==================================== ============================== ================== 51 36 99.9 30 GCTTCAGATGTGTGTCAGATCAATGAGGTTTAAACC # Left flank : AACCTTCTGGTATACGTACCAACCCAATTATAT # Right flank : TTATATACATGGCAATCTATATTGAAATTAAATACCATATTAATAAGATGAAAGCGCTTAGGCGCTTTTTATATGCCATATATGTCAAAAAAGAAGTTTACGCGAATAACGATTATGGTATGATATATTATGTTATAAATAATCACGTCAAACGTGAGATGGAGAAAGGGAGATTTTCCTGTTTTGGTAAATAAAAAATTGCGAGTGAAAGAACTACTTGTTTCAACAATAATTATTGGTGGCGTTCTGGGCACCATGTCTACGGTTAATGCTGCTGAAAATACAGCGCATGTATCGACACAAGTGCCAAGTACAATAGCATCAGGTTCGAGTGGTACATCACAAGCGCCAAGCACTAAGACACCAAGTTCAACCATAAATGAGTCGAGACAAAATGATAATTATAATGTCACGCCGTCAACAAAGTCTATTCAAGTACACCAAGCTAAATTTAAAACCGGTTCTGTAATCACATTGACTAATTCAGCAAAAACGTCCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAGATGTGTGTCAGATCAATGAGGTTTAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 8430-9257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBFI010000012.1 Leuconostoc gelidum subsp. gasicomitatum strain A.21.4 NODE_7_length_9220_cov_74.380913, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8430 36 100.0 30 .................................... AAAAGAACACCGTTGTACATAATGTTTGTC 8496 36 100.0 30 .................................... AGAAGAATGAGCCTTGTTTAGTATAATCGT 8562 36 100.0 30 .................................... ATTTTCTTTTGACATTAAATCACCCCTTTG 8628 36 100.0 30 .................................... CGAACTGACGACATACGTCGTACCAGAAGA 8694 36 100.0 30 .................................... ACGTGGCAGAGTTTATTGCAGTTGAGTTTA 8760 36 100.0 30 .................................... TATGGGGTTATGAAAGGGTTGACGAATGAT 8826 36 100.0 30 .................................... TATATTTAACATATGCTATGAACACAACAG 8892 36 100.0 30 .................................... TGCGATGGTTTCATTCTCTCCAGTTACTAT 8958 36 100.0 30 .................................... ATATGATAGTGATGATTGCCAACGACCAAA 9024 36 100.0 30 .................................... TAAAGATTTGAAACAAGCCGTGGAATTAAA 9090 36 100.0 30 .................................... ATTAGGGATAACCGACAAACCAACATATCT 9156 36 100.0 30 .................................... TGCCTTACGTGAGGCACAAGCCAAGAACCC 9222 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GCTTCAGATGTGTGTCAGATCAATGAGGTTTAAACC # Left flank : GGTGCGCAACTTGATGTGAATAAGTTGTATCAAAAAAATATCGTTAATACAATGAAAAATTATGCAGATGATCAAGCGTTAGAAGTGTTTTATAAAATAAATTCCGAATTAAATCATGTCTTAGAAAACATTATATTAGAGAACAATCTGCCCTTTTATTTTCAAACAGAATTCAATATTGTCGAATTAATAAATGAGAAAAAAATTAGGATAGAAACACTGACAAACAGCTCTGGATTTGGTAAAATAGAAGATGTAGTAAGCGTTGCTGGTGAGTTCTTAGAGCAACGTTTAATCGTTTTTACGAATTTGTATTTGTTGTTATCGGTTGATCAGATTGACTATCTGAATAATCTAGCGAAGACAATGAATTTATGTTTAATTTCTCTTAATTTGACACAAAACCCTGTTATGACTAAACAGGGTCTACCTCCAGAAATCTTTATTGATGAGGATTTCGTTCAATTTGGTGCTGACTAGCTGATGCGAACAGGCGGTCT # Right flank : TTCTGGTATACGTACCAACCCAATTATATCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAGATGTGTGTCAGATCAATGAGGTTTAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //