Array 1 461185-462737 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWY01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4518 NODE_2_length_717430_cov_58.810209, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 461185 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 461246 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 461307 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 461368 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 461429 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 461490 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 461551 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 461612 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 461673 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 461734 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 461795 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 461856 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 461917 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 461978 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 462039 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 462100 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 462161 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 462222 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 462283 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 462344 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 462405 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 462466 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 462527 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 462588 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 462649 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 462710 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 479052-479569 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWY01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4518 NODE_2_length_717430_cov_58.810209, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 479052 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 479113 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 479174 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 479235 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 479296 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 479357 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 479418 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 479479 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 479540 29 93.1 0 ............TC............... | A [479567] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //