Array 1 166409-165299 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDS010000001.1 Salmonella enterica isolate 1177_07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166408 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 166347 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 166286 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 166225 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 166164 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 166103 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 166042 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 165981 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 165919 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165816 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165755 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165694 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165633 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 165572 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 165511 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 165450 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 165389 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 165328 29 96.6 0 A............................ | A [165301] ========== ====== ====== ====== ============================= ========================================================================== ================== 18 29 99.6 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184583-182541 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDS010000001.1 Salmonella enterica isolate 1177_07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184582 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 184521 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 184460 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 184399 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 184338 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 184277 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 184216 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 184155 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 184094 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 184033 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 183972 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 183911 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183850 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183789 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183728 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183667 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183606 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183545 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183484 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183423 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 183362 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 183301 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 183240 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 183179 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 183118 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 183056 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 182995 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 182934 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 182873 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 182812 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182751 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182690 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182629 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182568 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //