Array 1 61809-62324 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSVS01000016.1 Corynebacterium diphtheriae bv. gravis strain 822 contig_23, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 61809 28 100.0 33 ............................ GGGTCGGGTCTGATGGCATGCCGGTCGCTCGCG 61870 28 100.0 33 ............................ TTCGGCAGCGTCACGCGCAGCGACCTCGCTTTA 61931 28 100.0 33 ............................ AAAATGTGGGGAGAATCCCCGCAATCTGAGCTG 61992 28 100.0 33 ............................ TCAGCAAATAACACCCGTGGATGGTGCTTTAAG 62053 28 100.0 33 ............................ CTGCGCGGTCATCCGAGGACCCTCACAAGATTG 62114 28 100.0 33 ............................ TTCGGCAGCGTCACGCGCAGCGACCTCGCTTTA 62175 28 100.0 33 ............................ TCAGCAAATAACACCCGTGGATGGTGCTTTAAG 62236 28 100.0 33 ............................ CTGCGCGGTCATCCGAGGACCCTCACAAGATTG 62297 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 GAAATACCTCCGCGTGTGCGGAGAAGAC # Left flank : CCGGTGACGATCACGCGCATGCCCTTGGTGAGGGATTCTGCAACGTTTTCGGCAGCTTGGTGCCAAATGTTGCACTGCAAGAAAACCGCGTCACCATCTACCCACTGGTTCGACCGGGAGTCGTACTTCTTGGAGGTAGAAGCAACACGGAAGCTGGTTACTGCTACACCATTAGGGGTGAAGCGAAGTTCTGGGTCTGCAACGAGATTACCAACAATGGTGACGTTGACTTCGCCTTGTGCCATTTTCTTTGTCCTTTGATCTAGTGCGCGTTGAAGGTATGCGCGCCCCACCACGCAGCACTTACACTGCTTCTTCTATAAGTTCCCGCACTTGCCCATCTTCAATCACAATGCCATGTTCACCGGTTTCATCAACCAGCTCAACCCACACCTGGAATCCTGTTTCTGTCGCAATATCGGAGAGAATCTTCTGAGACTCGGAGTCCATGAGCGAGCCATCAGACACACGCATCACACGAATATTTGGATTGCCTGCCG # Right flank : GCACAATGGAAACCCGTCGAATCCTCGAAGACGGAAATACCTCCGCGTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAATACCTCCGCGTGTGCGGAGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 116089-117217 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSVS01000037.1 Corynebacterium diphtheriae bv. gravis strain 822 contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 116089 29 100.0 32 ............................. ACGTCGGTGAGTAAAACTCCGAAAGTTACCGG 116150 29 100.0 32 ............................. CCAAGGAAATGTTTCTTAAACTCCCCACCATC 116211 29 100.0 32 ............................. AGGTGGTTACCGTGGCGAACCAGTGCGCTGGG 116272 29 100.0 32 ............................. CCGCGGCCGATGTGACCGCAGCACGGGGCGAC 116333 29 100.0 33 ............................. AGTTTCATATCCCTGAAATAAACTGTTCCAGTG 116395 29 100.0 33 ............................. ATCGAAGTACCGGTCTGCCATGAGGTCGTTATA 116457 29 100.0 32 ............................. TTCCGTTGCTCCAGGGGCAAGATTCTTAGTCT 116518 29 100.0 32 ............................. GCCCGCAGGTCAGACCACCGTAGTGTCCGGCC 116579 29 100.0 32 ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 116640 29 100.0 32 ............................. GACGAAAAAGGAGGCGATCGCCGGTTCTATCG 116701 29 100.0 32 ............................. CTACGGCTCCACAGGGCCAAAAGTTCGAGAAA 116762 29 100.0 32 ............................. AGGCAAGCCGCTGGAGGAGCTTACTCGCCAAT 116823 29 100.0 32 ............................. GCCATCATGGTGGCAAACGAGACGATCGAAGA 116884 29 100.0 32 ............................. AACGAATAGCCCCTGTAAATGCTACATATGCT 116945 29 100.0 32 ............................. GAAAGCTGTTCACCTGATCCGGCTCCAAACCT 117006 29 100.0 32 ............................. CTGTTTTGGTTGTGCAGTCCCCGAACATATCT 117067 29 100.0 32 ............................. GATGACCGCGGCCTTGTGCAGGTCAAGATTAG 117128 29 100.0 32 ............................. ATGGAAAGAAATCGCTGAACGCCGACTCCGCC 117189 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 100.0 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : ATACTTAGGATGTCCCAAAGCTAAGGTAGCGGGTCTTCTCCGCACACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 153081-152663 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSVS01000007.1 Corynebacterium diphtheriae bv. gravis strain 822 contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 153080 35 77.8 27 .GACAC.C..-...................A..... TCCTACGGCTCATCTCCGCTGGCGCGG 153018 36 97.2 28 G................................... CAGCAGCACCTAGCGAGGCTCGCGCCGA 152954 36 100.0 28 .................................... GCAAAAAATTTAGCAACTGTTAGACGAT 152890 36 100.0 28 .................................... TTCTATGGTACGTGGAAGCCGCTCGCGC 152826 36 100.0 28 .................................... GTGGACGCCGACACCACCAAAGCCCGCA 152762 36 100.0 28 .................................... CAGCACTCGCTCAAGGCTCAGGCAGCGT 152698 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 7 36 96.4 28 ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : AGGCGCTCTTGTTGACTACGTGGCCACCATCACGGACTTTGATACGCAGCGCGTCGAGGAAGATCACGGGGTAGAACTCGTCTAACTGGCGGTTTTGCCACACCATTACTTCATCAAGTACTGCATCTGTTACTGCAGAGATGGTATCACAAGAGATGTCCACCCCCGTCGTGTCCGCCACTGGTCAGTTTCTCATGTCCGCTAACAATCCCACCGGCATACAAACTCACGATCAAGCCATCGACATCCGTTAAACGCCTCGAACCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCCGGGTACCGTTGCGATAATTGTCGATCCCAGCAGCAGCTTTAGCTTCCCGATCACCGGATTGATAGCCAAGGTTAGCAAGCAGCTTTTCCTCAGGTCGTGCCAATCTTGGCCTTATCGGCTGGGTCTCGTCTTGCCACAGTAGCCATTCTGACTTATCTCCTTATGCGGAATGGAATCCCACACACAAACCATC # Right flank : AGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //