Array 1 17-446 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXTM01000135.1 Staphylococcus warneri strain SNUC 3172 contig135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 17 33 100.0 35 ................................. AACTTATTATTTCCCCGATTATTGCTATTGCAAGT 85 33 100.0 33 ................................. AACATAAATCTACAGATTCATTAGGCAAGCTTT 151 33 100.0 33 ................................. AACGAATGGCATAAAAACAGCATCTTTAATTGT 217 33 100.0 32 ................................. AACAATGCCTATTTTTGAAGGTGTTAAACGAG 282 33 97.0 33 ...............A................. AACTCTTTGTTCATTCTCTCGGTCTGGGTCTGA 348 33 97.0 33 ...............A................. AACGGTGTTTTTAACAAGTCTAATCCCGTATGC 414 32 75.8 0 ...........T...A....G.-A.....AA.T | T [440] ========== ====== ====== ====== ================================= =================================== ================== 7 33 95.7 33 GTTTTAGTACTCTGTGATTTTAGGTATGAGTGA # Left flank : GTTTTATATGCTAGAGG # Right flank : TATAATATTTTAGTTGCAATGCTATTGAATAACAATTATAATTTAATTACAGAGAACAAGTTTAGCTAACTTGTACTCATACCTAAAATTACAGAATCTACTGAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGATTTTTTGTGTTTTAGTACAACTTCTGTAGAAAAAATATAAAAAGTAGTGCCACGTTTATTGGTTTTAAATTATAATAAAATAAAACAAATAAGGTGGGTGTAAACTATGAAAGAAAAATATATTTTGGGTTTAGATTTAGGTATTACATCAGTAGGATATGGAATTATTAATTTTGAAACTAAAAAGATTATAGATGCAGGCGTTAGGCTTTTTCCAGAAGCAAACGTAGATAATAATGAAGGTCGTAGAAGTAAAAGAGGATCTAGACGATTAAAAAGGAGAAGAATTCATAGATTAGATCGAGTGAAATCATTACTCACAGAATATAACTTAATAAATAGAGAACAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTGATTTTAGGTATGAGTGA # Alternate repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 9350-8062 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXTM01000073.1 Staphylococcus warneri strain SNUC 3172 contig073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 9349 33 100.0 33 ................................. AACATTATGTAAGATTAGAAAGAAACATAAAGT 9283 33 100.0 33 ................................. AACTGGAAGCATTTATGAGTTACATGGATGTAG 9217 33 100.0 33 ................................. AACACCACCTATGGGGACGCCGAGACCTCGTAC 9151 33 100.0 33 ................................. AACAAAAAACCATTGATAACGAAAATGCGCGAA 9085 33 100.0 33 ................................. AACTTACATTTGAACAGTCTGAATTTGTACCAC 9019 33 100.0 33 ................................. AACATTCGAAAGGTTTTGTCGCAAGTGTTCCGT 8953 33 100.0 33 ................................. AACAAGAAAGGTTGATGAACAGATATCAATTGA 8887 33 100.0 32 ................................. AACTAAAGATGAAGATTTAAGCCTACATTTCG 8822 33 100.0 33 ................................. AACTCCTTCAGCACCATTAAAATCAAAAGCTAA 8756 33 100.0 34 ................................. AACTTATAATTTTTAAACCACAAGCCTTAAGCCT 8689 33 100.0 33 ................................. AACTAGTTAGTGTGCTTAGTTTGTTTGGTATAC 8623 33 100.0 33 ................................. AACTTCTGCCATCTTAACTAGTTGTCGTGGTTT 8557 33 100.0 33 ................................. AACTACGTATCCTTAAAAATGGTGACTATAGTA 8491 33 100.0 33 ................................. AACGGTTTCGCAAACGATGATTCGTTAGGTTAT 8425 33 100.0 33 ................................. AACATACAAGAAGGAAAAGCACTTAGGTTTCAT 8359 33 100.0 33 ................................. AACAACTTCGGTAGTAAATCATGCAAAAGGTTT 8293 33 100.0 33 ................................. AACTTGTGCCAAATGGCTATACGTTAGATAAGA 8227 33 100.0 33 ................................. AACTAACATCTCATTCTGTTCCAGGTACTTATA 8161 33 100.0 33 ................................. AAACGTTACTGAACGTGGAATCGACTTCGAGGA 8095 33 100.0 0 ................................. | A [8063] ========== ====== ====== ====== ================================= ================================== ================== 20 33 100.0 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : ACAATACGGTGGCAAGTTGCTATTAATATATTTGTATCCTGAAGCAAATTTAAGTCCAAAAGAACAAATACGTTTGAAAGAGTTAATAATATCACTTGGAATTGATATTATAGTATTAACAGGGTCATTGCATTTTTTAGCTAAGGATTGGAAGTATAATAACTATATTAGATGTGATAATCAAAAAATATCATCTGAATTGGTAGATAATCTACTTTGGAATGCCCCATTAAATTTTGAAAGAAGTGAAATAGAGCAGAGTTTAAATCAATTTATATTAGCTTACCAAGATAAAATCGAAATAAAACCGATTATCTCTAATTATCAAATTGCTCAAATTATGTTATTTAGTTCAATTGATTTATATGTAGGAGTTTCATATATGCAACATTGCAATCATGAATTTATATTGAATATAGATGAGACGAAATTACCCTTAAGTATGGCTAAATATTTAGAACAGTTTGTTAAAGAAAATTAACTATAATTTTGCGCTAGAG # Right flank : ATTGGAGGATATTTATGAGTAGCATGAGGAAGCCGATTATAAAAAATATTAGTTATTCTAATGAAGAGCTAGTTAATTCATTAGGCGAGTGGCAACAGAGTGATGATTCCAAATTTTTACTCAGATATCCCACCGTCTATATTATAAATGATAAAAATAAGTCTGATCATTTTAATTTGTATGTTGGTGAAACAACGGATATCAAAAATAGAACAATTCAACATTTGAAAAATGATGTGAAGCTTAAAGACTATTGGAAATCATTTTACAGTTCTGATACGTCTTCGATGTATGTCATCGGACATCCGTTCTTTAATAAGTCTTTAACTTTAGATATAGAAAACAAGTTTATGCAATATTTGTCTAGTGTAGATGCTGTGACTTCAATATTTAATAGTAGAACAAATCAGCAAAATGAATATTATACTTCTGAAAAATTAGATGAAATATTCACAAATATTTGGCAACAATTACATAAAGAGAATTGTAAACTTTTTCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //