Array 1 1749085-1749713 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT596221.1 Yersinia pseudotuberculosis isolate NZYP4713 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1749085 28 100.0 32 ............................ TAATCTGGCTGGTGAGAACATGATTGCGATTC 1749145 28 100.0 32 ............................ CTAACCCACTTTTAAACGCGGAAGGTAATGCA 1749205 28 100.0 32 ............................ AACAACGCGCGGAAGACAAGAAGGCGGCTCTT 1749265 28 100.0 33 ............................ AATTCCGCAGCTAATTGAACGTTACTCATTTCT 1749326 28 100.0 32 ............................ GGGAACATTTGGCGGAAGAATTGCGAGGTGGT 1749386 28 100.0 32 ............................ CAAGAAAAGACACGCCAAATATCTGAGCAGTA 1749446 28 100.0 32 ............................ ACACGGGGCGGGAAAATTGGATATATTGATTC 1749506 28 100.0 32 ............................ GCTAATGCTAATAAAGAAGTTGAGCAAATGCG 1749566 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 1749626 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 1749686 27 85.7 0 ...................-A.A.C... | T [1749710] ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2741333-2740341 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT596221.1 Yersinia pseudotuberculosis isolate NZYP4713 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2741332 28 100.0 32 ............................ TGTCATCAGTTACATTTGCATCTTCTATAGAA 2741272 28 100.0 32 ............................ AATGCTGGGAGACTAAGAGATGAAGAATTAGC 2741212 28 100.0 32 ............................ GCAAAGAAGACCACTCAGATGAGGTAAAGCAT 2741152 28 100.0 32 ............................ TAACCCACTGTTAAATGCAGAGGGTAATGCTG 2741092 28 100.0 32 ............................ AACCTACATTATGGGTTCGTCTGGATTATGGC 2741032 28 100.0 32 ............................ AACAACAGCTACGCTCCATTAACTCTGTATGT 2740972 28 100.0 32 ............................ GGTTGCCACAAAGTATTCAACCAGCCATTTTA 2740912 28 100.0 32 ............................ AAGTAAGGCACAGAAGGTTGTCACAATGACAA 2740852 28 100.0 32 ............................ ATTTCCGCCAGATTCCATAGCGCTATTACTAA 2740792 28 100.0 33 ............................ CAAACGGATTACAAAAATGGGGTGTATTTAGCA 2740731 28 100.0 32 ............................ ATCTTTAAACATATTTAAATCTATTGCTAATT 2740671 28 100.0 34 ............................ CCGATGGTCCGGCAATACCGATAACCACTTTTGA 2740609 28 100.0 32 ............................ AACAACGCCGCAGACGCAACCAGTGCCAATAC 2740549 28 100.0 33 ............................ CCTGCCTGAATAGGGTGCATCAGCAAACCAAAT 2740488 28 100.0 32 ............................ TCAAAAACCTGATGGCAGTGGCCCGGCAATAT 2740428 28 100.0 32 ............................ TCAGGCTGGCGGCGAAATCACCACCTTTGCAT 2740368 27 89.3 0 .....................CC.-... | T [2740343] ========== ====== ====== ====== ============================ ================================== ================== 17 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //