Array 1 33188-34296 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLKT01000019.1 Moraxella canis strain HAMBI_2792 CBFNKHCI_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33188 28 100.0 32 ............................ ATGGTTTCTGTGTGCGCTCTGATTGCTCGCTT 33248 28 100.0 32 ............................ TTGTATTTATACTTTAGAAACAAGGGAACTAT 33308 28 100.0 32 ............................ TGTCACTAGCTTTAGGTAGTGACAGGTGCAAA 33368 28 100.0 32 ............................ TTGTATTTATACATTAGGGATAACTGGCGGAT 33428 28 100.0 32 ............................ GTGGCGAGCATTGGGAATATCGCGAGCAACTT 33488 28 100.0 33 ............................ TCCAGATAGTCTCCGAATTCGCTGATGTGTAAT 33549 28 100.0 32 ............................ ATGATCTTCTCAATCTCCTGTTTACCGAATGG 33609 28 100.0 32 ............................ ACCATCTTTCGCGCATTGGGGATAGCGTAGTC 33669 28 100.0 32 ............................ TTTAGTTTAAAAAAGATCTTTACCTTGTTCTA 33729 28 100.0 32 ............................ AACTCTTCGCCTGTCAGTTCATTTAGTGCAGA 33789 28 100.0 32 ............................ TACCATCATTTTATGGCAAAAATACGCCAAAA 33849 28 100.0 32 ............................ ACTAAGCGATTTCATCACATAGAAAAATCAAA 33909 28 100.0 32 ............................ TGAAGTTCCTGCGTCTGCTCTGTCAAGTACTG 33969 28 100.0 32 ............................ ATAATGTTCGGTAAAGGCGATTAAGCAGATTT 34029 28 100.0 32 ............................ TAATACCCACGCACACCCCCATTTTCATTGCC 34089 28 100.0 32 ............................ AAATCTTGATAAATGCTCAAGCGTAATTTTTG 34149 28 100.0 32 ............................ ATCAACCACAATCATAAATTTCTTACGCTTAA 34209 28 100.0 32 ............................ ATCAACCACAATCATAAATTTCTTACGCTTAA 34269 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 33 CTTCACGACCGCATAGGTCGCTTAGAAA # Left flank : TCGCATGGCGGCTTGGGTGATGGATGTCCCTGTGCCAAGCAAGATGACTGTGGTATTGGCGATGGGGATATTATAATAGTGGTTTTCGTATTTGGTTTCGGTGAGATACAGGATGCGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATACGTTGGCGCGCTTGGAGTGCAAAATTGCCTTAAGATCCGTGGGTTTGAGCGTATCCATGACGTCAATTTCCTTAATGATGAATTTAATTTAATCACACCCATTATAGCCTGTCAAGCGATGATGCGACCAAATTATAAGCTTATATTATCCATCTGCCATATCAGTTATGCTATACTAAATTTGACATCAGATGATGATGGGTGTAAAAAACCTTTATTTTTTTAACTATTTAAAAACTTAATAAAATCAATAAGTTATAACTAGTCAACTTTTGATTGGATAAAAAGGGTCAATCCATCATAAATGGCTGTTATTTCTTAATTTTTTCGGTTATAATTACT # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCATAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3139-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLKT01000071.1 Moraxella canis strain HAMBI_2792 CBFNKHCI_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3138 28 100.0 33 ............................ ACACAGGTGGCAGCATGAACGATCGCGATTATA 3077 28 100.0 32 ............................ ATGTTTTGTCTCCTTAAGTTAATCCGTGATTG 3017 28 100.0 32 ............................ ACGCAAAGCCTTTATCTGTAAGGCTTTCAGAC 2957 28 100.0 32 ............................ ATTGCGCCCGTGCGTTACTTCTAAAGCCCGAA 2897 28 100.0 32 ............................ TTTGGCGAGCAGGGCTAAAAGACGGCAATAGT 2837 28 100.0 32 ............................ CTGAAGGCATGGTTGGTATTGTGCTGCAAACG 2777 28 100.0 32 ............................ AAGATGAGATGGCGCAGCTTGAGGATGAATAT 2717 28 100.0 32 ............................ ATTATGTTGGTGATGACGGAGCGATCATACTA 2657 28 100.0 33 ............................ ATAATGAATTTGACAGTAACGGGGATGTCATCT 2596 28 100.0 32 ............................ TTGGCGGTTTGGGTTGCCTAAGCGTTATTGCT 2536 28 100.0 32 ............................ TATTTGGGGCGGTTAAAAATCAGTACTCAAGG 2476 28 100.0 32 ............................ ATAATCGTCGGTCCATTTCTCGCTGACTGCGA 2416 28 100.0 32 ............................ AATGACCCTGATAAACCACGCAACGGCATTTA 2356 28 100.0 32 ............................ GTCTTCATCAGCAAATGCCCCTGCGTACAAAC 2296 28 100.0 32 ............................ AAGCAAGGCGGTGTGTGGGTATATGCAGAATA 2236 28 100.0 32 ............................ TTTCTTAAAGTCACCATCATTTTGATAATATT 2176 28 100.0 32 ............................ ACCGAGGGTGCGCTAAGCTTGAAAGAGCGTAA 2116 28 100.0 32 ............................ ATGATTACTTTTAACGCCTTATCTAGCGTCGG 2056 28 100.0 32 ............................ AAAGCCGTGTCATTTGTCGTAGAAAGCGAGCT 1996 28 100.0 32 ............................ AATGACCCTGATAAACCACGCAACGGCATTTA 1936 28 100.0 32 ............................ TGTGCGTTCATCATAGACCATTGTAGCGGAAC 1876 28 100.0 32 ............................ AATCAATACAAAAGCTTCTGTAATGATTGAGT 1816 28 100.0 32 ............................ CAATGCTTTGTTTAATCTAAAAAGAAAACCAG 1756 28 100.0 32 ............................ TTTGCGTTCCTATAAGGGCGTTACTCTTATAG 1696 28 100.0 32 ............................ ATGAGCTTTACGCTATCATTGACCTGCTCGCT 1636 28 100.0 32 ............................ ATTCTGCTTGTTTAATGTACCCCTTGCCAAAA 1576 28 100.0 32 ............................ TTAGCAGGGGGCTGTAATGCTGATATACGTTT 1516 28 100.0 32 ............................ GATCTGGTGACTTCAATGGTTCGGACATGGCC 1456 28 100.0 32 ............................ CTTTGCAATCCCCCCCAAAAAAAACCGCCCAA 1396 28 100.0 32 ............................ CCCCGAAACCCCCCATTCATCTGTCACTAGTT 1336 28 100.0 32 ............................ ATTGAGTGTCTCAACAATCATATACAAGGTTT 1276 28 100.0 32 ............................ TAGAATGTCACGCACAGGCTGCCAGAGATTGA 1216 28 100.0 32 ............................ AAGATGATGAGCGCAGTTTCGCAATTGTGCGT 1156 28 100.0 32 ............................ TCTTCAAGCTTTGCTTTGGCTTCTTCAATTTG 1096 28 100.0 32 ............................ AATGTATGCCGTTGAGCGTGGCAAGGGTAACT 1036 28 100.0 32 ............................ AAAGACTGGCACAAGAATTTTGAATACAAAGA 976 28 100.0 32 ............................ GTTTACAGACGCAGATAAAACCGCCCTTTTTT 916 28 100.0 32 ............................ TCCCATATTAAAACGTCGTTTTGATAAATCGA 856 28 100.0 31 ............................ AAAAAATAGCAAAGACCCCCGCCAAGCCTAT 797 28 100.0 32 ............................ ATTTTTACGAAGTCTTTGTAAACGAAGTAGGG 737 28 100.0 33 ............................ ATTCTAGGCGCTATGCCGAAGCCTTTGGAGTGC 676 28 100.0 32 ............................ AGTGGCATTTTCGCACCATGCCCTAAGAAAGA 616 28 100.0 32 ............................ AGAACGCTCAGACAATGCTACAATGATCTATC 556 28 100.0 33 ............................ TCTGACTGTCTGCGCCTTTGATATCGCTTAAAT 495 28 100.0 32 ............................ TTGAGTACCAAGCAATAAGAAATGATGATGCG 435 28 100.0 32 ............................ CATCATTGCACCAATGCCACCATCCGCCACCA 375 28 100.0 32 ............................ AATCCGCTTTCACCTATGCCAAACTTCAAATA 315 28 100.0 32 ............................ AGTCTTGGGCGGTTAATGTTTTTTTAGATAAA 255 28 100.0 32 ............................ ACGACGGTGTGCTGACGCACTAGCCAACACGG 195 28 100.0 32 ............................ CACTGCCACAATCAACCAAGGGTCAATCATCA 135 28 100.0 32 ............................ TTTTGAGTTAAGTGCGTTTAAATGCTTAAATA 75 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 52 28 100.0 32 CTTCACGACCGCATAGGTCGCTTAGAAA # Left flank : | # Right flank : ATCGATAACCCCCTGTCACCGCCCAATGGCAGGCTTCACGACCGCATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCATAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1917-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLKT01000081.1 Moraxella canis strain HAMBI_2792 CBFNKHCI_81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1916 28 100.0 32 ............................ TTCAAAAATAGCGAAAATAAGCGTTTTTAGCG 1856 28 100.0 32 ............................ TACAGGGTCAGTATAGCCCTTATCCCACCCAT 1796 28 100.0 32 ............................ ATGCTTATGATTATTATCACCAAGATTTTCTA 1736 28 100.0 32 ............................ TGGCATTAATCAAAGCTATACGATTCGATCAG 1676 28 100.0 32 ............................ CCGCCTGATAACTCAAAGCAATGGCGGTGGGT 1616 28 100.0 32 ............................ ATTATCATTCATTGGGTAACCATGACTAGAAT 1556 28 100.0 32 ............................ TTTTGATGCCATTGGTTGCCCAGCGCCTGCGC 1496 28 100.0 32 ............................ TGTCTTGCCCATTGCCACGCGCCTTTTTTCGA 1436 28 100.0 32 ............................ TAAAACGGGTATGTTTGTTGTTTTTGAGAACA 1376 28 100.0 32 ............................ TAGGCACACCATTAGAAACGGTGTACGTGTGT 1316 28 100.0 32 ............................ TTATAAAATCGCAGAAAATCACCAAAAATCAT 1256 28 100.0 32 ............................ AAATCGCCAAAGATGCCTTTGATCAATTAAAA 1196 28 100.0 32 ............................ TTATAAAATCGCAGAAAATCACCAAAAATCAT 1136 28 100.0 32 ............................ AAATCGCCAAAGATGCCTTTGATCAATTAAAA 1076 28 100.0 32 ............................ CCAAAATCGCACCCACCAAGCAGATGATAAAA 1016 28 100.0 32 ............................ ATCTGCATTTTTATACGCTGCGTCAAGCTGAA 956 28 100.0 32 ............................ GCGCATGGCTTGCCAGATAATGGGCTAGTACT 896 28 100.0 32 ............................ TGAGTAAGTCAAAAAACTACTTAACTAACGCT 836 28 100.0 32 ............................ TACGCCCTCATGGGTGCTATGGTCGGCTCCAG 776 28 100.0 32 ............................ AATATATCGCAGAGCGAATAGCGTATCGCCTA 716 28 100.0 33 ............................ CGATTTGGCAAATCGGCAAAAACGCGCGTCTTT 655 28 100.0 32 ............................ CCAGATCTAATGCGATCTTAATTTCCTTGACA 595 28 100.0 32 ............................ GCTGAAGTGAGCTTTACGATCCAGCTAAGGGG 535 28 100.0 32 ............................ CCATGCAAACGACACCGTCCATTTGCCATAGG 475 28 100.0 32 ............................ TGACAGACGAGCGGATTATAGCAAAGTGATCA 415 28 100.0 32 ............................ AGTATGTGCGTCAGTGGCTTTTTTTATCTCTT 355 28 100.0 32 ............................ ATCAACGACAACGTCCAAGGAAAGTTTAATCT 295 28 100.0 32 ............................ ACGATTCTTCTGAGATTCTTTCTGCTGCTCGA 235 28 100.0 32 ............................ GTTTACCCTTGTTGTGTTGGTGTTTAGATAAA 175 28 100.0 32 ............................ GTCTTAAAAAAAGGGGAAGTGGAATTGAGGGG 115 28 100.0 32 ............................ GAAATGATTACCGCAGGCGATACAGAGCAAGA 55 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 32 28 100.0 32 CTTCACGACCGCATAGGTCGCTTAGAAA # Left flank : | # Right flank : ATATAAAAATTTACTTATTGCTAATGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCATAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //