Array 1 67857-68798 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZKY01000040.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal615 sal615_contig_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 67857 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 67918 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 67979 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 68040 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 68101 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 68162 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 68223 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 68285 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 68346 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 68407 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 68468 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 68529 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 68590 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 68651 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 68712 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 68773 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16642-18013 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZKY01000027.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal615 sal615_contig_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16642 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 16703 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 16764 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 16825 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 16886 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 16947 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 17008 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 17069 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 17130 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 17191 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 17252 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 17313 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 17374 29 96.6 32 A............................ TTAATCCCCACGGCCAGGAGGTATTGATCAAC 17435 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 17496 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 17557 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 17618 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 17679 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 17740 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 17801 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 17862 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 17923 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 17984 29 100.0 0 ............................. | A [18011] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //